Wall clock time and date at job start Tue Mar 31 2020 12:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47670 * 2 1 4 4 C 1.50704 * 109.47000 * 240.00439 * 2 1 3 5 5 O 1.21297 * 119.99540 * 240.00024 * 4 2 1 6 6 N 1.34773 * 120.00137 * 59.72697 * 4 2 1 7 7 C 1.40090 * 120.00151 * 175.59625 * 6 4 2 8 8 C 1.38707 * 120.07529 * 34.72046 * 7 6 4 9 9 C 1.38195 * 120.01697 * 179.72175 * 8 7 6 10 10 C 1.38546 * 120.17484 * 0.55596 * 9 8 7 11 11 F 1.35103 * 119.92031 * 179.74140 * 10 9 8 12 12 C 1.38345 * 120.15781 * 359.72638 * 10 9 8 13 13 C 1.38742 * 119.97193 * 359.97438 * 12 10 9 14 14 O 1.35779 * 120.08381 * 179.97438 * 13 12 10 15 15 C 1.34808 * 116.99988 * 5.29742 * 14 13 12 16 16 H 1.07998 * 119.99859 * 354.97241 * 15 14 13 17 17 C 1.38637 * 119.99813 * 174.96944 * 15 14 13 18 18 N 1.31578 * 119.99645 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00091 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47211 * 90.00296 * 19 17 15 21 21 H 1.48498 * 109.47327 * 209.99976 * 19 17 15 22 22 H 1.48501 * 109.47513 * 330.00307 * 19 17 15 23 23 C 1.52998 * 109.47457 * 120.00437 * 2 1 3 24 24 C 1.54272 * 110.03221 * 297.16786 * 23 2 1 25 25 C 1.54888 * 104.19539 * 217.10326 * 24 23 2 26 26 C 1.54889 * 102.74914 * 37.94223 * 25 24 23 27 27 C 1.53880 * 110.03638 * 179.97438 * 23 2 1 28 28 H 1.09005 * 109.46675 * 299.99602 * 1 2 3 29 29 H 1.09000 * 109.47283 * 59.99656 * 1 2 3 30 30 H 1.09000 * 109.47120 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99866 * 355.58595 * 6 4 2 32 32 H 1.08001 * 119.98969 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.90635 * 180.27748 * 9 8 7 34 34 H 1.07994 * 120.01232 * 180.02562 * 12 10 9 35 35 H 0.97001 * 119.99297 * 180.02562 * 18 17 15 36 36 H 1.08999 * 110.01634 * 58.60682 * 23 2 1 37 37 H 1.08998 * 110.48169 * 335.78165 * 24 23 2 38 38 H 1.08994 * 110.48979 * 98.42251 * 24 23 2 39 39 H 1.08997 * 110.75718 * 279.62389 * 25 24 23 40 40 H 1.09003 * 110.91603 * 156.32548 * 25 24 23 41 41 H 1.09000 * 110.48648 * 203.38126 * 26 25 24 42 42 H 1.08997 * 110.60229 * 80.79075 * 26 25 24 43 43 H 1.08997 * 110.02969 * 238.56818 * 27 23 2 44 44 H 1.08996 * 110.02452 * 359.95377 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6966 -1.1193 6 7 1.7022 -0.2530 -2.4546 7 6 2.2431 -0.8566 -3.5972 8 6 2.4830 -2.2227 -3.6143 9 6 3.0113 -2.8177 -4.7442 10 6 3.3134 -2.0515 -5.8582 11 9 3.8346 -2.6378 -6.9582 12 6 3.0825 -0.6875 -5.8471 13 6 2.5465 -0.0845 -4.7183 14 8 2.3194 1.2541 -4.7047 15 6 2.5328 1.9228 -5.8556 16 1 2.9462 1.4082 -6.7104 17 6 2.2215 3.2710 -5.9419 18 7 2.4293 3.9235 -7.0654 19 14 1.5057 4.1607 -4.4637 20 1 2.6081 4.7225 -3.6425 21 1 0.6238 5.2617 -4.9279 22 1 0.7161 3.2056 -3.6455 23 6 2.0400 -0.7213 1.2491 24 6 1.5923 0.0359 2.5165 25 6 2.7936 -0.1004 3.4847 26 6 4.0123 0.0241 2.5369 27 6 3.5788 -0.7294 1.2619 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.0899 0.4939 -2.5444 32 1 2.2532 -2.8220 -2.7457 33 1 3.1933 -3.8822 -4.7570 34 1 3.3184 -0.0926 -6.7169 35 1 2.2118 4.8669 -7.1257 36 1 1.6615 -1.7432 1.2706 37 1 1.4039 1.0848 2.2875 38 1 0.7033 -0.4278 2.9439 39 1 2.7846 -1.0730 3.9768 40 1 2.7931 0.7034 4.2209 41 1 4.8894 -0.4484 2.9793 42 1 4.2170 1.0705 2.3109 43 1 3.9465 -1.7551 1.2906 44 1 3.9620 -0.2202 0.3777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760786156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:29 Heat of formation + Delta-G solvation = -102.479634 kcal Electronic energy + Delta-G solvation = -27407.342401 eV Core-core repulsion = 23432.062474 eV Total energy + Delta-G solvation = -3975.279927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.31227 -40.56971 -39.22579 -37.87376 -36.44152 -34.30429 -33.32700 -32.53700 -29.64454 -28.83802 -28.64463 -27.53534 -25.49048 -24.29897 -22.41716 -21.61944 -20.70819 -20.30377 -19.39969 -18.34269 -18.00583 -17.07904 -16.76776 -15.85450 -15.57185 -15.34473 -15.16310 -15.01819 -14.60120 -14.35806 -14.15361 -13.84888 -13.52751 -13.41545 -13.32869 -13.25635 -12.86339 -12.47420 -12.37198 -12.29504 -11.90170 -11.63956 -11.48550 -11.17686 -11.13366 -11.08630 -10.95105 -10.81402 -10.78123 -10.68995 -10.49189 -10.36233 -9.77250 -9.74563 -9.32790 -9.03581 -8.01139 -7.29296 -6.57555 -4.25116 1.68699 1.98716 2.84190 3.08295 3.11558 3.19161 3.35838 4.05677 4.20682 4.41634 4.49331 4.50703 4.57416 4.85791 4.91155 4.95505 4.97822 5.02767 5.29378 5.39875 5.48132 5.49308 5.53032 5.56133 5.62063 5.65708 5.68131 5.71852 5.84085 5.88523 5.90691 5.99414 6.06532 6.08937 6.21292 6.36391 6.38903 6.41318 6.69806 6.79310 6.82699 6.96151 7.42261 7.59519 7.75754 7.84159 8.41485 8.75278 9.30253 10.49568 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.004502 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.218828 B = 6218.543067 C = 8209.335428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.099 0.901 4 C 0.513 3.487 5 O -0.528 6.528 6 N -0.654 5.654 7 C 0.058 3.942 8 C -0.050 4.050 9 C -0.223 4.223 10 C 0.130 3.870 11 F -0.149 7.149 12 C -0.247 4.247 13 C 0.165 3.835 14 O -0.207 6.207 15 C -0.392 4.392 16 H 0.109 0.891 17 C 0.066 3.934 18 N -0.871 5.871 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.261 1.261 23 C -0.069 4.069 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.109 4.109 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.410 0.590 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.282 0.718 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -6.467 16.710 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 H 0.117 0.883 4 C 0.301 3.699 5 O -0.404 6.404 6 N -0.299 5.299 7 C -0.036 4.036 8 C -0.070 4.070 9 C -0.243 4.243 10 C 0.110 3.890 11 F -0.127 7.127 12 C -0.267 4.267 13 C 0.111 3.889 14 O -0.112 6.112 15 C -0.467 4.467 16 H 0.126 0.874 17 C -0.138 4.138 18 N -0.508 5.508 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.185 1.185 23 C -0.088 4.088 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.167 4.167 27 C -0.147 4.147 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.117 -6.766 16.826 18.401 hybrid contribution -0.339 0.896 -0.118 0.965 sum -3.456 -5.870 16.708 18.043 Atomic orbital electron populations 1.21828 0.92964 1.02822 1.02849 1.21499 0.97450 1.00937 0.92777 0.88325 1.20696 0.80035 0.84905 0.84271 1.90654 1.37665 1.25662 1.86445 1.43228 1.46686 1.35919 1.04030 1.16908 1.08735 0.91129 0.86825 1.20648 0.97141 0.91760 0.97489 1.20556 1.10515 0.99851 0.93369 1.17474 0.97438 0.90907 0.83154 1.91429 1.84445 1.84520 1.52339 1.20985 1.10722 0.93474 1.01536 1.18557 0.94078 0.83855 0.92438 1.83521 1.76581 1.14279 1.36801 1.20778 1.43721 0.93189 0.89053 0.87368 1.24476 0.96160 0.95418 0.97761 1.69649 1.45485 1.10644 1.24985 0.86180 0.79533 0.79285 0.81816 1.19751 1.20593 1.18484 1.21567 0.96013 0.99241 0.91945 1.22460 0.97852 1.00426 0.94980 1.22476 0.94974 1.01379 0.97353 1.22442 0.97653 1.00506 0.96091 1.22120 0.94424 1.00915 0.97221 0.91205 0.91989 0.91941 0.75403 0.83949 0.85750 0.83349 0.90781 0.90410 0.91395 0.91686 0.91666 0.91872 0.92012 0.91887 0.91444 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.89 37.16 0.33 -1.04 16 2 C -0.11 -1.20 2.03 -91.77 -0.19 -1.39 16 3 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 4 C 0.51 7.79 6.39 -10.98 -0.07 7.72 16 5 O -0.53 -9.17 12.08 5.54 0.07 -9.10 16 6 N -0.65 -10.87 5.11 -9.72 -0.05 -10.92 16 7 C 0.06 1.12 6.33 -83.45 -0.53 0.59 16 8 C -0.05 -0.91 8.70 -39.42 -0.34 -1.25 16 9 C -0.22 -3.97 10.02 -39.48 -0.40 -4.36 16 10 C 0.13 2.55 7.29 -39.43 -0.29 2.26 16 11 F -0.15 -2.84 17.26 2.25 0.04 -2.80 16 12 C -0.25 -5.32 9.14 -39.36 -0.36 -5.68 16 13 C 0.17 3.62 6.67 -38.94 -0.26 3.36 16 14 O -0.21 -4.98 8.15 0.02 0.00 -4.98 16 15 C -0.39 -10.39 9.95 30.88 0.31 -10.08 16 16 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 17 C 0.07 1.75 5.49 -17.51 -0.10 1.66 16 18 N -0.87 -24.02 13.96 55.48 0.77 -23.25 16 19 Si 0.91 19.92 28.62 -169.99 -4.86 15.06 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.07 -0.74 2.12 -89.50 -0.19 -0.93 16 24 C -0.12 -1.02 5.32 -25.07 -0.13 -1.15 16 25 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 26 C -0.13 -1.26 6.83 -25.04 -0.17 -1.43 16 27 C -0.11 -1.30 5.08 -25.58 -0.13 -1.43 16 28 H 0.07 0.53 7.27 -51.93 -0.38 0.15 16 29 H 0.06 0.58 7.46 -51.93 -0.39 0.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.41 6.35 7.86 -40.82 -0.32 6.03 16 32 H 0.14 2.46 6.19 -52.49 -0.32 2.14 16 33 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.15 3.36 5.63 -52.49 -0.30 3.06 16 35 H 0.28 7.16 8.31 -40.82 -0.34 6.83 16 36 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.07 0.56 7.75 -51.93 -0.40 0.15 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.89 6.90 -51.93 -0.36 0.53 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -28.16 357.75 -7.44 -35.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.11 Total: 9.36 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.68 Total: -14.36 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.73 Total: -34.16 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.07 Total: -14.09 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.86 Total: 15.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.16 -7.44 -35.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760786156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.881 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds