Wall clock time and date at job start Tue Mar 31 2020 13:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99793 * 2 1 4 4 C 1.50699 * 109.46936 * 179.97438 * 3 2 1 5 5 O 1.21295 * 120.00170 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00189 * 179.97438 * 4 3 2 7 7 C 1.40098 * 120.00238 * 175.37907 * 6 4 3 8 8 C 1.38869 * 119.99741 * 215.09020 * 7 6 4 9 9 C 1.38053 * 119.99309 * 180.02562 * 8 7 6 10 10 C 1.38857 * 120.00249 * 0.02562 * 9 8 7 11 11 N 1.40118 * 119.99800 * 179.97438 * 10 9 8 12 12 C 1.34771 * 119.99850 * 35.08874 * 11 10 9 13 13 O 1.21589 * 120.00698 * 355.38769 * 12 11 10 14 14 N 1.34784 * 119.99698 * 175.38789 * 12 11 10 15 15 C 1.46497 * 120.00227 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.46947 * 324.99661 * 15 14 12 17 17 C 1.52994 * 109.47413 * 84.99416 * 15 14 12 18 18 C 1.50695 * 109.47240 * 205.00145 * 15 14 12 19 19 H 1.08007 * 120.00031 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00466 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99483 * 359.97438 * 20 18 15 22 22 Si 1.86794 * 120.00602 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.47450 * 179.97438 * 22 20 18 24 24 H 1.48506 * 109.47130 * 300.00011 * 22 20 18 25 25 H 1.48504 * 109.47073 * 59.99624 * 22 20 18 26 26 C 1.38858 * 120.00439 * 0.22882 * 10 9 8 27 27 C 1.38052 * 119.99583 * 359.49511 * 26 10 9 28 28 H 1.08999 * 109.46634 * 60.00633 * 1 2 3 29 29 H 1.08998 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47198 * 300.00502 * 1 2 3 31 31 H 1.09001 * 109.47109 * 59.99632 * 3 2 1 32 32 H 1.09000 * 109.47073 * 299.99395 * 3 2 1 33 33 H 0.97000 * 120.00018 * 355.37791 * 6 4 3 34 34 H 1.08000 * 119.99907 * 359.97438 * 8 7 6 35 35 H 1.08005 * 119.99736 * 179.97438 * 9 8 7 36 36 H 0.96998 * 119.99383 * 215.09757 * 11 10 9 37 37 H 0.96997 * 119.99977 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.46864 * 60.00194 * 17 15 14 39 39 H 1.09001 * 109.47058 * 179.97438 * 17 15 14 40 40 H 1.08996 * 109.47301 * 300.00831 * 17 15 14 41 41 H 0.97002 * 120.00054 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.00158 * 179.72463 * 26 10 9 43 43 H 1.08005 * 120.00152 * 180.25093 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0342 0.0915 0.0015 6 7 4.2764 2.2968 0.0002 7 6 5.6698 2.1885 0.0986 8 6 6.3931 3.1469 0.7961 9 6 7.7662 3.0404 0.8925 10 6 8.4239 1.9753 0.2916 11 7 9.8175 1.8676 0.3890 12 6 10.4466 2.2602 1.5143 13 8 9.8163 2.7851 2.4118 14 7 11.7747 2.0711 1.6448 15 6 12.4587 2.4973 2.8682 16 1 11.9963 3.4103 3.2436 17 6 12.3463 1.3970 3.9252 18 6 13.9120 2.7577 2.5666 19 1 14.2887 2.6191 1.5639 20 6 14.7609 3.1729 3.5705 21 7 14.3021 3.3422 4.7914 22 14 16.5625 3.4950 3.1969 23 1 17.2555 3.9284 4.4366 24 1 17.1923 2.2507 2.6863 25 1 16.6720 4.5624 2.1702 26 6 7.7011 1.0198 -0.4104 27 6 6.3275 1.1232 -0.5021 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8616 3.1710 -0.0682 34 1 5.8816 3.9760 1.2625 35 1 8.3289 3.7860 1.4347 36 1 10.3293 1.5105 -0.3535 37 1 12.2776 1.6520 0.9290 38 1 12.8086 0.4840 3.5498 39 1 12.8555 1.7140 4.8353 40 1 11.2951 1.2086 4.1433 41 1 14.8993 3.6339 5.4979 42 1 8.2131 0.1939 -0.8816 43 1 5.7648 0.3779 -1.0446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775477532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:12 Heat of formation + Delta-G solvation = -97.298576 kcal Electronic energy + Delta-G solvation = -25781.057645 eV Core-core repulsion = 21825.922348 eV Total energy + Delta-G solvation = -3955.135298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80344 -41.18524 -39.52247 -38.37651 -36.99865 -36.18408 -34.91616 -34.18318 -31.92221 -31.24978 -30.28381 -28.55004 -27.32418 -26.68284 -24.51420 -23.76122 -22.76141 -21.79845 -21.37694 -19.81629 -18.95977 -18.76460 -18.32985 -17.81509 -17.28270 -17.07140 -16.86653 -16.38943 -15.98735 -15.97552 -15.79130 -15.24073 -15.17469 -14.89282 -14.42261 -14.26297 -14.06708 -14.03858 -13.82816 -13.61681 -13.14512 -12.98367 -12.87571 -12.72652 -12.36487 -12.29658 -12.25819 -12.13730 -11.90238 -11.20694 -11.10739 -10.93864 -10.74710 -10.59456 -10.46563 -9.89574 -9.79706 -8.67694 -8.16210 -6.33637 0.20421 0.44238 1.46038 1.47358 1.48773 1.56366 1.69100 1.83679 2.19965 2.43533 2.86945 3.10129 3.14248 3.45632 3.63784 3.97022 4.04728 4.20371 4.27801 4.37946 4.47819 4.52013 4.57628 4.60291 4.73287 4.83011 4.90327 4.93591 5.09036 5.11409 5.30151 5.34523 5.42821 5.47616 5.59359 5.61557 5.67763 5.86351 6.02238 6.09524 6.11344 6.27978 6.45210 6.73701 7.10945 7.24171 7.35046 7.68446 8.90076 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.041234 B = 0.001934 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.883336 B =14473.019441 C =14574.634698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.049 3.951 4 C 0.504 3.496 5 O -0.554 6.554 6 N -0.652 5.652 7 C 0.117 3.883 8 C -0.116 4.116 9 C -0.124 4.124 10 C 0.144 3.856 11 N -0.676 5.676 12 C 0.692 3.308 13 O -0.624 6.624 14 N -0.714 5.714 15 C 0.288 3.712 16 H 0.002 0.998 17 C -0.134 4.134 18 C -0.547 4.547 19 H 0.075 0.925 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.265 1.265 25 H -0.270 1.270 26 C -0.129 4.129 27 C -0.109 4.109 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.431 0.569 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.421 0.579 37 H 0.404 0.596 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.266 0.734 42 H 0.148 0.852 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.974 -1.260 -14.807 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.030 4.030 4 C 0.293 3.707 5 O -0.430 6.430 6 N -0.301 5.301 7 C 0.022 3.978 8 C -0.136 4.136 9 C -0.145 4.145 10 C 0.048 3.952 11 N -0.326 5.326 12 C 0.393 3.607 13 O -0.505 6.505 14 N -0.367 5.367 15 C 0.185 3.815 16 H 0.020 0.980 17 C -0.193 4.193 18 C -0.585 4.585 19 H 0.093 0.907 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.799 3.201 23 H -0.212 1.212 24 H -0.189 1.189 25 H -0.196 1.196 26 C -0.150 4.150 27 C -0.130 4.130 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.271 0.729 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.259 0.741 37 H 0.239 0.761 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.979 -1.702 -13.762 28.570 hybrid contribution 1.192 0.433 -0.253 1.293 sum -23.788 -1.269 -14.015 27.638 Atomic orbital electron populations 1.23032 0.78086 1.04127 1.01802 1.87968 1.22276 1.26781 1.95852 1.22363 0.87664 0.86965 1.06011 1.21244 0.90644 0.83723 0.75093 1.90732 1.75354 1.28465 1.48495 1.43189 1.03654 1.10657 1.72604 1.17698 0.83244 0.97592 0.99251 1.20924 0.92927 1.00771 0.99001 1.21165 0.94953 0.97747 1.00651 1.17775 0.82182 0.94975 1.00223 1.42488 1.05549 1.67572 1.16953 1.16253 0.82713 0.79351 0.82396 1.90839 1.66166 1.50667 1.42807 1.45451 1.05323 1.63982 1.21908 1.18260 0.90732 0.92135 0.80408 0.98032 1.21928 0.96967 0.98572 1.01877 1.21494 0.93317 1.47179 0.96516 0.90734 1.25800 1.03631 0.94568 0.94570 1.70051 1.37294 1.46289 1.01868 0.85362 0.78440 0.78899 0.77392 1.21238 1.18941 1.19552 1.20927 0.93585 0.98000 1.02503 1.21084 0.93439 0.98643 0.99821 0.91838 0.89036 0.92225 0.86895 0.86270 0.72916 0.82893 0.86177 0.74096 0.76138 0.94196 0.91315 0.97180 0.92520 0.83404 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.15 10.24 -129.94 -1.33 -8.48 16 3 C 0.05 0.51 6.42 71.24 0.46 0.97 16 4 C 0.50 9.76 7.75 87.66 0.68 10.43 16 5 O -0.55 -16.81 13.94 15.96 0.22 -16.59 16 6 N -0.65 -10.06 5.34 -303.38 -1.62 -11.68 16 7 C 0.12 2.70 6.30 38.12 0.24 2.94 16 8 C -0.12 -2.83 9.96 22.38 0.22 -2.60 16 9 C -0.12 -3.96 8.69 22.37 0.19 -3.76 16 10 C 0.14 4.43 6.30 38.11 0.24 4.67 16 11 N -0.68 -21.03 5.35 -317.05 -1.70 -22.72 16 12 C 0.69 28.81 8.37 179.05 1.50 30.31 16 13 O -0.62 -31.38 13.44 -4.00 -0.05 -31.44 16 14 N -0.71 -29.99 5.07 -461.42 -2.34 -32.33 16 15 C 0.29 15.09 2.56 44.24 0.11 15.20 16 16 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 17 C -0.13 -6.97 9.26 71.98 0.67 -6.30 16 18 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 20 C 0.01 0.78 5.30 84.65 0.45 1.22 16 21 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 22 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 C -0.13 -3.35 9.96 22.37 0.22 -3.13 16 27 C -0.11 -2.84 8.69 22.37 0.19 -2.64 16 28 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.43 2.67 8.82 -92.71 -0.82 1.86 16 34 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 35 H 0.12 4.55 6.22 -2.91 -0.02 4.53 16 36 H 0.42 9.65 8.84 -92.71 -0.82 8.83 16 37 H 0.40 13.97 8.56 -92.71 -0.79 13.17 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 43 H 0.14 3.66 6.22 -2.91 -0.02 3.64 16 Total: -1.00 -81.07 366.32 0.75 -80.32 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -1.35 Total: 31.28 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 6.65 Total: 20.15 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.41 Total: -119.08 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -1.16 Total: -56.51 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -81.07 0.75 -80.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775477532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.977 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds