Wall clock time and date at job start Tue Mar 31 2020 13:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46908 * 2 1 4 4 O 1.45197 * 109.46850 * 119.99977 * 2 1 3 5 5 C 1.34233 * 117.00056 * 269.99524 * 4 2 1 6 6 O 1.20827 * 119.99788 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00110 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47316 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47687 * 180.02562 * 8 7 5 10 10 C 1.38593 * 120.80449 * 269.73263 * 9 8 7 11 11 N 1.32329 * 119.10498 * 179.71455 * 10 9 8 12 12 C 1.31796 * 120.81940 * 0.56474 * 11 10 9 13 13 N 1.31792 * 121.75103 * 359.70602 * 12 11 10 14 14 C 1.32336 * 120.82321 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47065 * 240.00047 * 2 1 3 16 16 O 1.21280 * 119.99672 * 256.02777 * 15 2 1 17 17 N 1.34771 * 120.00044 * 76.02935 * 15 2 1 18 18 C 1.46501 * 120.00309 * 5.35720 * 17 15 2 19 19 C 1.46499 * 119.99881 * 185.36324 * 17 15 2 20 20 C 1.50709 * 109.47256 * 89.99825 * 19 17 15 21 21 H 1.08004 * 119.99578 * 359.97438 * 20 19 17 22 22 C 1.37870 * 120.00073 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00418 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99855 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47057 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46825 * 120.00186 * 24 22 20 27 27 H 1.48497 * 109.46892 * 239.99757 * 24 22 20 28 28 H 1.09001 * 109.47039 * 186.13729 * 1 2 3 29 29 H 1.09001 * 109.47292 * 306.13879 * 1 2 3 30 30 H 1.08997 * 109.47129 * 66.13941 * 1 2 3 31 31 H 1.08993 * 109.47409 * 300.00684 * 7 5 4 32 32 H 1.09008 * 109.47057 * 60.01087 * 7 5 4 33 33 H 1.08999 * 109.47735 * 300.01207 * 8 7 5 34 34 H 1.09012 * 109.46733 * 60.00412 * 8 7 5 35 35 H 1.08000 * 120.44457 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.12476 * 179.73086 * 12 11 10 37 37 H 1.07995 * 120.44817 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.46599 * 84.82390 * 18 17 15 39 39 H 1.08998 * 109.47250 * 204.82633 * 18 17 15 40 40 H 1.09003 * 109.46958 * 324.83236 * 18 17 15 41 41 H 1.08998 * 109.47235 * 209.99356 * 19 17 15 42 42 H 1.08996 * 109.47364 * 329.99776 * 19 17 15 43 43 H 0.96992 * 120.00590 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2518 2.2505 7 6 2.7181 -0.5772 3.5495 8 6 2.8624 0.4889 4.6374 9 6 3.3640 -0.1521 5.9057 10 6 2.4778 -0.6478 6.8490 11 7 2.9552 -1.2092 7.9481 12 6 4.2542 -1.2897 8.1558 13 7 5.1261 -0.8245 7.2838 14 6 4.7227 -0.2556 6.1591 15 6 2.0323 -0.7104 -1.2305 16 8 2.4735 -1.8367 -1.1427 17 7 1.9913 -0.0942 -2.4284 18 6 1.5689 1.3058 -2.5179 19 6 2.3689 -0.8243 -3.6410 20 6 1.1506 -1.4919 -4.2253 21 1 0.1911 -1.3835 -3.7414 22 6 1.2611 -2.2419 -5.3769 23 7 2.4296 -2.3743 -5.9659 24 14 -0.2489 -3.0700 -6.1007 25 1 -1.4320 -2.7678 -5.2557 26 1 -0.4807 -2.5612 -7.4764 27 1 -0.0341 -4.5386 -6.1458 28 1 -0.3633 -1.0218 0.1099 29 1 -0.3634 0.6061 0.8299 30 1 -0.3633 0.4157 -0.9398 31 1 2.0087 -1.3368 3.8774 32 1 3.6871 -1.0408 3.3641 33 1 3.5716 1.2490 4.3097 34 1 1.8932 0.9522 4.8228 35 1 1.4121 -0.5806 6.6872 36 1 4.6137 -1.7496 9.0644 37 1 5.4424 0.1239 5.4490 38 1 2.4228 1.9557 -2.3268 39 1 1.1774 1.5041 -3.5156 40 1 0.7925 1.4991 -1.7777 41 1 2.7861 -0.1285 -4.3690 42 1 3.1136 -1.5804 -3.3928 43 1 2.5074 -2.9022 -6.7759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796168618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:26 Heat of formation + Delta-G solvation = -74.317423 kcal Electronic energy + Delta-G solvation = -26085.275648 eV Core-core repulsion = 22131.136888 eV Total energy + Delta-G solvation = -3954.138760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48613 -40.76442 -39.02700 -36.70892 -35.22928 -34.92958 -34.12099 -32.88403 -31.82259 -30.75194 -27.83650 -26.41936 -26.06082 -25.03481 -24.43598 -23.12215 -22.17703 -20.63101 -18.87408 -18.13752 -18.06417 -17.98544 -16.79773 -16.59355 -16.38433 -16.03217 -15.31831 -15.05526 -14.83469 -14.54885 -14.34149 -14.13869 -14.07960 -13.96702 -13.48247 -13.20966 -12.91351 -12.64499 -12.37670 -12.20468 -12.12125 -11.79165 -11.68660 -11.47636 -11.30275 -11.27709 -11.25139 -10.94344 -10.78298 -10.69001 -10.60081 -10.21786 -9.86360 -9.68330 -9.64222 -8.96514 -8.49591 -7.76816 -6.10246 -4.15731 0.40260 0.63401 2.04022 2.39242 3.18484 3.26077 3.33365 3.34139 3.37847 3.71489 3.78949 3.82186 4.13394 4.23521 4.30247 4.39049 4.44294 4.70667 4.77313 4.83027 4.96058 5.03098 5.05838 5.13537 5.23675 5.24443 5.48217 5.55968 5.56284 5.62976 5.68039 5.81895 5.93992 6.03594 6.19383 6.36252 6.50304 6.94197 7.35490 7.42150 7.60843 7.63087 7.85691 8.15094 8.24448 8.79145 8.94239 9.49629 10.97882 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.002123 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.950936 B =13182.835417 C =13394.141155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.326 6.326 5 C 0.461 3.539 6 O -0.512 6.512 7 C -0.110 4.110 8 C -0.060 4.060 9 C -0.188 4.188 10 C 0.153 3.847 11 N -0.519 5.519 12 C 0.288 3.712 13 N -0.518 5.518 14 C 0.154 3.846 15 C 0.509 3.491 16 O -0.521 6.521 17 N -0.596 5.596 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.169 0.831 36 H 0.196 0.804 37 H 0.170 0.830 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 8.363 23.070 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.121 0.879 4 O -0.241 6.241 5 C 0.305 3.695 6 O -0.401 6.401 7 C -0.148 4.148 8 C -0.099 4.099 9 C -0.192 4.192 10 C -0.013 4.013 11 N -0.232 5.232 12 C 0.001 3.999 13 N -0.231 5.231 14 C -0.012 4.012 15 C 0.293 3.707 16 O -0.396 6.396 17 N -0.330 5.330 18 C -0.070 4.070 19 C 0.126 3.874 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.186 0.814 36 H 0.213 0.787 37 H 0.187 0.813 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.603 7.582 23.738 24.927 hybrid contribution -1.176 0.064 -1.376 1.811 sum -0.574 7.646 22.362 23.640 Atomic orbital electron populations 1.22159 0.92071 1.04139 1.03820 1.22684 0.96078 0.97337 0.82689 0.87931 1.86636 1.76240 1.41521 1.19661 1.23648 0.74284 0.85907 0.85706 1.90654 1.48404 1.16576 1.84420 1.21365 1.04704 0.99543 0.89174 1.20281 1.03865 0.96577 0.89162 1.21634 0.96104 1.02352 0.99099 1.23240 1.00991 0.89248 0.87812 1.68461 1.17119 1.15874 1.21737 1.25027 0.84783 0.92462 0.97668 1.68467 1.40495 1.10664 1.03496 1.23265 0.93888 0.90853 0.93214 1.19769 0.80234 0.86849 0.83815 1.90698 1.45181 1.18412 1.85338 1.48084 1.65242 1.11925 1.07726 1.21835 0.98988 0.82642 1.03571 1.19379 0.96726 0.92088 0.79169 1.21456 0.94796 1.31405 1.09152 0.92301 1.24948 0.96289 0.96139 0.96750 1.69938 1.23160 1.40391 1.19690 0.86424 0.82749 0.79392 0.78746 1.19780 1.20926 1.20816 0.90633 0.91266 0.89454 0.87274 0.87185 0.89053 0.89078 0.81361 0.78736 0.81303 0.93414 0.90046 0.92256 0.94603 0.93565 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.19 37.16 0.34 -1.89 16 2 C 0.07 1.12 2.14 -27.88 -0.06 1.06 16 3 H 0.10 1.48 6.31 -51.93 -0.33 1.16 16 4 O -0.33 -5.03 9.47 -45.76 -0.43 -5.46 16 5 C 0.46 5.54 7.93 36.00 0.29 5.82 16 6 O -0.51 -6.85 15.20 -18.75 -0.29 -7.13 16 7 C -0.11 -0.84 5.79 -27.89 -0.16 -1.00 16 8 C -0.06 -0.37 4.68 -27.89 -0.13 -0.50 16 9 C -0.19 -1.22 5.17 -104.36 -0.54 -1.76 16 10 C 0.15 1.06 11.01 -17.21 -0.19 0.87 16 11 N -0.52 -4.44 10.44 -14.58 -0.15 -4.59 16 12 C 0.29 2.28 12.29 -92.15 -1.13 1.14 16 13 N -0.52 -4.52 10.44 -14.58 -0.15 -4.67 16 14 C 0.15 1.10 11.01 -17.20 -0.19 0.91 16 15 C 0.51 10.67 6.95 -10.99 -0.08 10.59 16 16 O -0.52 -13.26 16.13 -13.54 -0.22 -13.47 16 17 N -0.60 -12.43 2.86 -182.95 -0.52 -12.95 16 18 C 0.07 1.13 9.79 59.85 0.59 1.71 16 19 C 0.24 6.30 5.18 -5.19 -0.03 6.27 16 20 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 21 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 24 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.14 6.33 -51.93 -0.33 0.81 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 34 H 0.09 0.54 8.06 -51.92 -0.42 0.12 16 35 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.20 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 40 H 0.06 0.75 4.92 -51.93 -0.26 0.50 16 41 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.05 1.35 7.35 -51.93 -0.38 0.96 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -35.97 372.79 -8.04 -44.01 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.89 Total: -2.24 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.71 Total: 9.87 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.09 Total: -47.63 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.94 Total: -26.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.97 -8.04 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796168618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.306 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds