Wall clock time and date at job start Tue Mar 31 2020 13:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 5 5 C 1.34224 * 117.00063 * 269.99753 * 4 2 1 6 6 O 1.20827 * 119.99784 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00259 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47249 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46906 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46855 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46681 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00320 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99302 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00539 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99500 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46850 * 90.00064 * 15 13 11 17 17 H 1.48496 * 109.47114 * 209.99669 * 15 13 11 18 18 H 1.48494 * 109.47141 * 330.00219 * 15 13 11 19 19 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 20 20 O 1.21266 * 120.00280 * 245.00180 * 19 2 1 21 21 N 1.34771 * 120.00236 * 65.00118 * 19 2 1 22 22 C 1.38932 * 120.00365 * 179.97438 * 21 19 2 23 23 N 1.32405 * 119.20320 * 359.73153 * 22 21 19 24 24 C 1.32283 * 120.74789 * 179.75852 * 23 22 21 25 25 C 1.38605 * 119.18793 * 0.50571 * 24 23 22 26 26 C 1.38614 * 118.53595 * 359.74631 * 25 24 23 27 27 N 1.32277 * 119.18585 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46984 * 300.00023 * 7 5 4 32 32 H 1.08999 * 109.47120 * 59.99618 * 7 5 4 33 33 H 1.08995 * 109.46893 * 300.00002 * 8 7 5 34 34 H 1.08996 * 109.46864 * 59.99969 * 8 7 5 35 35 H 1.08995 * 109.47624 * 299.99895 * 9 8 7 36 36 H 1.09004 * 109.46941 * 60.00174 * 9 8 7 37 37 H 1.08995 * 109.47201 * 300.00499 * 10 9 8 38 38 H 1.08996 * 109.46607 * 60.00496 * 10 9 8 39 39 H 0.97003 * 120.00220 * 179.97438 * 14 13 11 40 40 H 0.97004 * 120.00103 * 0.02562 * 21 19 2 41 41 H 1.08001 * 120.40149 * 180.25287 * 24 23 22 42 42 H 1.08002 * 120.73757 * 179.77072 * 25 24 23 43 43 H 1.07998 * 120.41240 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9974 1.2517 2.2505 7 6 2.7183 -0.5772 3.5495 8 6 2.8624 0.4889 4.6374 9 6 3.3706 -0.1623 5.9254 10 6 3.5154 0.9040 7.0131 11 6 4.0165 0.2627 8.2815 12 1 4.2125 -0.7990 8.3089 13 6 4.2247 1.0315 9.4069 14 7 3.9864 2.3244 9.3734 15 14 4.8465 0.2368 10.9790 16 1 6.3312 0.2601 10.9915 17 1 4.3298 0.9877 12.1512 18 1 4.3730 -1.1692 11.0437 19 6 2.0323 -0.7104 -1.2304 20 8 2.6528 -1.7466 -1.1215 21 7 1.7919 -0.1943 -2.4520 22 6 2.2554 -0.8490 -3.5863 23 7 2.9363 -1.9762 -3.4488 24 6 3.3878 -2.6272 -4.5081 25 6 3.1493 -2.1099 -5.7717 26 6 2.4376 -0.9252 -5.8787 27 7 2.0106 -0.3276 -4.7786 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.0087 -1.3369 3.8775 32 1 3.6871 -1.0410 3.3640 33 1 3.5717 1.2488 4.3097 34 1 1.8934 0.9522 4.8228 35 1 2.6610 -0.9220 6.2530 36 1 4.3396 -0.6259 5.7403 37 1 4.2252 1.6634 6.6853 38 1 2.5466 1.3679 7.1983 39 1 4.1326 2.8652 10.1653 40 1 1.2958 0.6347 -2.5392 41 1 3.9391 -3.5483 -4.3896 42 1 3.5096 -2.6187 -6.6536 43 1 2.2341 -0.4954 -6.8484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:56 Heat of formation + Delta-G solvation = -70.193694 kcal Electronic energy + Delta-G solvation = -25347.444439 eV Core-core repulsion = 21393.484497 eV Total energy + Delta-G solvation = -3953.959942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82107 -40.87174 -39.65877 -36.83945 -35.55609 -34.99034 -34.17843 -32.91148 -32.52976 -31.03525 -29.82901 -26.21550 -25.70314 -25.15196 -24.05297 -22.70680 -21.18717 -20.51809 -20.03261 -19.23996 -18.18981 -17.66094 -17.03134 -16.59855 -16.36686 -16.15731 -16.10734 -15.90474 -15.04435 -15.00212 -14.60017 -14.42152 -14.21036 -13.93861 -13.67480 -13.22707 -12.80497 -12.66625 -12.35852 -12.05333 -11.76045 -11.66444 -11.62336 -11.49409 -11.33294 -11.09393 -11.00319 -10.61074 -10.58943 -10.46373 -10.44967 -10.25188 -9.64531 -9.48030 -9.28548 -9.26270 -9.01759 -8.31012 -5.95902 -3.98366 0.40410 0.63596 1.64525 2.05170 2.19741 2.65876 3.34613 3.39750 3.40687 3.44094 3.57601 3.78636 4.15351 4.26997 4.35902 4.48954 4.51046 4.64211 4.65818 4.67772 5.09022 5.19513 5.24341 5.27355 5.27982 5.39750 5.45241 5.60164 5.71564 5.95042 6.05623 6.16058 6.24612 6.39591 6.47011 6.55108 6.76819 6.94553 7.16640 7.48147 7.69570 7.72794 7.73018 7.87406 8.04817 8.46799 9.09150 9.65499 11.15359 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.001680 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.580248 B =16664.952902 C =17086.571895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 H 0.116 0.884 4 O -0.332 6.332 5 C 0.463 3.537 6 O -0.502 6.502 7 C -0.110 4.110 8 C -0.108 4.108 9 C -0.111 4.111 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.512 3.488 20 O -0.438 6.438 21 N -0.638 5.638 22 C 0.539 3.461 23 N -0.505 5.505 24 C 0.179 3.821 25 C -0.263 4.263 26 C 0.179 3.821 27 N -0.549 5.549 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.425 0.575 41 H 0.173 0.827 42 H 0.150 0.850 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -7.317 -33.984 35.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 H 0.134 0.866 4 O -0.248 6.248 5 C 0.306 3.694 6 O -0.389 6.389 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.296 3.704 20 O -0.302 6.302 21 N -0.291 5.291 22 C 0.183 3.817 23 N -0.225 5.225 24 C 0.011 3.989 25 C -0.287 4.287 26 C 0.012 3.988 27 N -0.270 5.270 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.263 0.737 41 H 0.190 0.810 42 H 0.168 0.832 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.476 -7.077 -32.829 34.202 hybrid contribution 0.368 -0.165 -0.118 0.420 sum -6.108 -7.242 -32.947 34.282 Atomic orbital electron populations 1.22191 0.91344 1.04355 1.04531 1.22246 0.96196 0.97593 0.82451 0.86645 1.86689 1.77252 1.41668 1.19222 1.24421 0.73752 0.86172 0.85035 1.90667 1.47730 1.16655 1.83845 1.21647 1.03607 1.01030 0.88479 1.21592 1.02720 0.96481 0.93767 1.21657 0.99496 0.99817 0.93849 1.19099 0.97190 0.93487 0.91946 1.21282 1.43981 0.94584 0.96100 0.92664 1.25036 0.95708 0.94845 0.98940 1.69969 1.49142 1.05007 1.29348 0.86601 0.79017 0.79377 0.83042 1.20707 1.21266 1.19894 1.20487 0.80623 0.86105 0.83216 1.90876 1.33902 1.20506 1.84896 1.43091 1.55675 1.27358 1.02942 1.19391 0.89430 0.87281 0.85564 1.68512 1.12264 1.07533 1.34172 1.23290 0.91180 0.97363 0.87025 1.22819 1.05262 1.00126 1.00510 1.23009 0.88977 0.90522 0.96258 1.67795 1.25560 1.35656 0.97987 0.90137 0.89827 0.90573 0.87582 0.87563 0.91502 0.91473 0.93128 0.93139 0.96543 0.96523 0.93047 0.73679 0.80977 0.83201 0.80912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.50 37.16 0.35 -0.90 16 2 C 0.07 0.76 2.97 -27.88 -0.08 0.67 16 3 H 0.12 1.09 7.16 -51.93 -0.37 0.72 16 4 O -0.33 -4.35 9.42 -45.87 -0.43 -4.78 16 5 C 0.46 6.51 7.93 36.01 0.29 6.80 16 6 O -0.50 -8.09 15.20 -18.75 -0.29 -8.38 16 7 C -0.11 -1.49 5.81 -27.88 -0.16 -1.65 16 8 C -0.11 -1.85 4.51 -26.73 -0.12 -1.97 16 9 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.51 5.75 7.14 -10.99 -0.08 5.67 16 20 O -0.44 -6.65 14.71 -14.04 -0.21 -6.86 16 21 N -0.64 -5.65 5.36 -13.07 -0.07 -5.72 16 22 C 0.54 5.55 8.38 -322.25 -2.70 2.85 16 23 N -0.50 -5.72 7.87 -13.83 -0.11 -5.83 16 24 C 0.18 1.31 11.30 -17.22 -0.19 1.11 16 25 C -0.26 -1.26 10.16 -39.31 -0.40 -1.66 16 26 C 0.18 0.99 11.30 -17.22 -0.19 0.79 16 27 N -0.55 -4.66 10.46 -13.83 -0.14 -4.81 16 28 H 0.08 0.37 7.93 -51.93 -0.41 -0.04 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.42 2.35 8.60 -40.82 -0.35 2.00 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 43 H 0.17 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -37.71 376.11 -10.01 -47.72 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.17 Total: -3.28 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -3.98 Total: -4.01 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.41 Total: -42.97 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.92 Total: -20.02 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.71 -10.01 -47.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.470 kcal (2) G-P(sol) polarization free energy of solvation -37.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds