Wall clock time and date at job start Tue Mar 31 2020 12:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47101 * 2 1 4 4 C 1.52999 * 109.47355 * 119.99621 * 2 1 3 5 5 C 1.53000 * 109.47355 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46802 * 300.00255 * 5 4 2 7 7 H 1.08995 * 109.47081 * 299.99408 * 6 5 4 8 8 C 1.50699 * 109.46717 * 179.97438 * 6 5 4 9 9 O 1.21300 * 120.00248 * 240.00227 * 8 6 5 10 10 N 1.34783 * 119.99925 * 60.00329 * 8 6 5 11 11 C 1.40094 * 119.99754 * 185.44612 * 10 8 6 12 12 C 1.38714 * 120.07630 * 24.77062 * 11 10 8 13 13 C 1.38183 * 120.01720 * 179.97438 * 12 11 10 14 14 C 1.38557 * 120.17768 * 359.97438 * 13 12 11 15 15 F 1.35104 * 119.92283 * 180.02562 * 14 13 12 16 16 C 1.38341 * 120.15548 * 359.97438 * 14 13 12 17 17 C 1.38747 * 119.97282 * 359.79105 * 16 14 13 18 18 O 1.35776 * 120.08289 * 180.25077 * 17 16 14 19 19 C 1.34801 * 117.00242 * 5.20538 * 18 17 16 20 20 H 1.08003 * 120.00412 * 354.98701 * 19 18 17 21 21 C 1.38638 * 120.00034 * 174.97717 * 19 18 17 22 22 N 1.31573 * 120.00063 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00073 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47523 * 89.99278 * 23 21 19 25 25 H 1.48499 * 109.47396 * 209.99761 * 23 21 19 26 26 H 1.48508 * 109.46884 * 329.99707 * 23 21 19 27 27 C 1.52998 * 109.47260 * 60.00431 * 6 5 4 28 28 C 1.52999 * 109.47360 * 240.00200 * 2 1 3 29 29 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47060 * 300.00090 * 1 2 3 31 31 H 1.08998 * 109.47270 * 60.00275 * 1 2 3 32 32 H 1.09001 * 109.46842 * 300.00480 * 4 2 1 33 33 H 1.09003 * 109.46706 * 60.00137 * 4 2 1 34 34 H 1.08998 * 109.47270 * 180.02562 * 5 4 2 35 35 H 1.09003 * 109.46637 * 60.00123 * 5 4 2 36 36 H 0.96991 * 119.99813 * 5.71842 * 10 8 6 37 37 H 1.07994 * 119.99057 * 359.95183 * 12 11 10 38 38 H 1.07999 * 119.90973 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.01158 * 179.97438 * 16 14 13 40 40 H 0.96999 * 119.99835 * 180.02562 * 22 21 19 41 41 H 1.09003 * 109.47756 * 59.99166 * 27 6 5 42 42 H 1.09001 * 109.47160 * 179.97438 * 27 6 5 43 43 H 1.08998 * 109.47317 * 59.99553 * 28 2 1 44 44 H 1.09003 * 109.46850 * 299.99954 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5701 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 1 3.7158 -2.4709 0.0000 8 6 5.5865 -1.4434 -0.0009 9 8 6.1926 -0.9184 -0.9111 10 7 6.2608 -2.0267 1.0098 11 6 7.6570 -1.9283 1.0691 12 6 8.3060 -0.8689 0.4523 13 6 9.6832 -0.7727 0.5121 14 6 10.4198 -1.7324 1.1876 15 9 11.7660 -1.6330 1.2432 16 6 9.7799 -2.7914 1.8062 17 6 8.3970 -2.8916 1.7544 18 8 7.7663 -3.9273 2.3651 19 6 8.5301 -4.7643 3.0952 20 1 9.6033 -4.6433 3.1084 21 6 7.9382 -5.7806 3.8293 22 7 8.6837 -6.5972 4.5423 23 14 6.0822 -5.9904 3.8062 24 1 5.7011 -6.9050 2.7002 25 1 5.6327 -6.5641 5.1001 26 1 5.4372 -4.6687 3.6001 27 6 3.5695 -0.7221 -1.2496 28 6 2.0401 -0.7212 -1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6766 -0.2073 2.1392 33 1 1.6767 -1.7488 1.2493 34 1 3.9334 -1.2359 2.1387 35 1 3.9337 0.3059 1.2487 36 1 5.7797 -2.5180 1.6939 37 1 7.7349 -0.1192 -0.0750 38 1 10.1867 0.0531 0.0316 39 1 10.3563 -3.5383 2.3318 40 1 8.2696 -7.3085 5.0557 41 1 3.9332 0.3055 -1.2498 42 1 3.9328 -1.2360 -2.1395 43 1 1.6767 -0.2074 -2.1392 44 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844427640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:57 Heat of formation + Delta-G solvation = -108.522518 kcal Electronic energy + Delta-G solvation = -27187.431735 eV Core-core repulsion = 23211.889769 eV Total energy + Delta-G solvation = -3975.541966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.29655 -40.61464 -39.25529 -38.06099 -36.45351 -34.30101 -32.93170 -32.53537 -30.94315 -29.64527 -28.74840 -26.85504 -25.45687 -23.17924 -22.81872 -22.04006 -21.41487 -20.16879 -19.69348 -18.36839 -18.05429 -17.08811 -16.76334 -15.69744 -15.46392 -15.27664 -15.03850 -14.66813 -14.48305 -14.44877 -14.15810 -14.13097 -13.78674 -13.63750 -13.36124 -13.22340 -12.75704 -12.54942 -12.41497 -12.37375 -12.27694 -11.93486 -11.67770 -11.53426 -11.29206 -11.13703 -11.01019 -10.87683 -10.76959 -10.52794 -10.49620 -10.21287 -9.88805 -9.75414 -9.33672 -9.03506 -7.99708 -7.23476 -6.57139 -4.24611 1.67314 1.98672 2.81688 3.08181 3.11449 3.18684 3.32055 4.05638 4.23126 4.41867 4.43434 4.49312 4.52769 4.86493 4.88081 4.91522 4.96680 5.00316 5.18704 5.25882 5.31326 5.34346 5.42146 5.48567 5.56454 5.64162 5.66391 5.68988 5.85061 5.87077 5.91274 5.96830 6.01656 6.03722 6.09619 6.16198 6.28921 6.38818 6.67699 6.79025 6.84277 6.94418 7.42736 7.59617 7.74520 7.84462 8.36333 8.75605 9.30165 10.50037 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010665 B = 0.004267 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.759417 B = 6560.518462 C = 8847.889989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.105 4.105 7 H 0.098 0.902 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.651 5.651 11 C 0.064 3.936 12 C -0.062 4.062 13 C -0.219 4.219 14 C 0.126 3.874 15 F -0.149 7.149 16 C -0.244 4.244 17 C 0.161 3.839 18 O -0.210 6.210 19 C -0.391 4.391 20 H 0.109 0.891 21 C 0.066 3.934 22 N -0.871 5.871 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.261 1.261 27 C -0.097 4.097 28 C -0.114 4.114 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.282 0.718 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 11.292 -6.767 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.127 4.127 7 H 0.116 0.884 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.295 5.295 11 C -0.031 4.031 12 C -0.082 4.082 13 C -0.239 4.239 14 C 0.106 3.894 15 F -0.128 7.128 16 C -0.264 4.264 17 C 0.107 3.893 18 O -0.115 6.115 19 C -0.467 4.467 20 H 0.126 0.874 21 C -0.138 4.138 22 N -0.508 5.508 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.185 1.185 27 C -0.135 4.135 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.248 0.752 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.739 11.388 -7.227 19.253 hybrid contribution -0.423 -0.702 0.569 0.997 sum -14.161 10.686 -6.658 18.949 Atomic orbital electron populations 1.21832 0.95348 1.01775 1.01519 1.21179 0.95295 0.99822 0.95035 0.91127 1.21591 0.94635 1.01051 0.97714 1.21558 0.96157 1.01160 0.96210 1.21354 0.90968 1.02318 0.98013 0.88426 1.20735 0.90039 0.78230 0.81007 1.90627 1.69903 1.45053 1.35218 1.43279 1.05338 1.53584 1.27281 1.16976 0.82202 0.96517 1.07393 1.20775 0.93347 0.96033 0.98079 1.20566 0.93961 1.01685 1.07661 1.17474 0.76301 0.96327 0.99294 1.91428 1.30289 1.96116 1.94927 1.20974 0.94376 1.01897 1.09185 1.18457 0.89931 0.86914 0.94007 1.83493 1.37157 1.33067 1.57747 1.20765 0.92497 1.08553 1.24847 0.87358 1.24473 1.00280 0.94643 0.94432 1.69643 1.36419 1.16928 1.27822 0.86186 0.83398 0.79369 0.77881 1.19744 1.20581 1.18510 1.21321 0.94664 1.01286 0.96257 1.21615 0.95249 1.00773 0.97534 0.92709 0.92790 0.92794 0.91576 0.91636 0.91137 0.91176 0.75163 0.83380 0.85731 0.83326 0.90782 0.91124 0.91111 0.91716 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.98 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.11 -1.11 5.11 -26.73 -0.14 -1.24 16 6 C -0.11 -1.19 2.53 -91.77 -0.23 -1.42 16 7 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 8 C 0.51 7.81 6.96 -10.98 -0.08 7.73 16 9 O -0.53 -9.44 13.14 5.54 0.07 -9.36 16 10 N -0.65 -10.89 5.14 -9.71 -0.05 -10.94 16 11 C 0.06 1.24 6.45 -83.45 -0.54 0.70 16 12 C -0.06 -1.14 8.72 -39.43 -0.34 -1.48 16 13 C -0.22 -3.93 10.02 -39.48 -0.40 -4.32 16 14 C 0.13 2.48 7.29 -39.43 -0.29 2.20 16 15 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 16 C -0.24 -5.27 9.14 -39.36 -0.36 -5.63 16 17 C 0.16 3.54 6.66 -38.94 -0.26 3.28 16 18 O -0.21 -5.03 7.99 0.05 0.00 -5.03 16 19 C -0.39 -10.36 9.94 30.88 0.31 -10.06 16 20 H 0.11 2.99 5.44 -52.48 -0.29 2.70 16 21 C 0.07 1.74 5.49 -17.51 -0.10 1.65 16 22 N -0.87 -24.03 13.96 55.48 0.77 -23.26 16 23 Si 0.91 19.87 28.62 -169.99 -4.86 15.01 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.10 -1.01 4.49 -26.76 -0.12 -1.13 16 28 C -0.11 -0.94 5.20 -26.76 -0.14 -1.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.41 6.49 7.94 -40.82 -0.32 6.17 16 37 H 0.15 2.62 5.78 -52.49 -0.30 2.31 16 38 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.15 3.37 5.63 -52.49 -0.30 3.07 16 40 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -28.30 359.04 -7.57 -35.88 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.23 Total: 8.63 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.72 Total: -13.51 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.72 Total: -34.20 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.86 Total: 15.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.30 -7.57 -35.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844427640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.645 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds