Wall clock time and date at job start Tue Mar 31 2020 13:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34723 * 117.00249 * 2 1 4 4 O 1.21490 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.47584 * 120.00154 * 179.97438 * 3 2 1 6 6 C 1.41687 * 126.50569 * 179.97438 * 5 3 2 7 7 C 1.34688 * 105.33576 * 180.02562 * 6 5 3 8 8 N 1.35517 * 107.72491 * 359.95201 * 7 6 5 9 9 N 1.28428 * 109.72883 * 0.06652 * 8 7 6 10 10 C 1.46998 * 123.90292 * 180.11009 * 8 7 6 11 11 C 1.53140 * 108.88778 * 17.63709 * 10 8 7 12 12 C 1.53154 * 109.60636 * 308.89151 * 11 10 8 13 13 C 1.50794 * 127.52655 * 179.97438 * 7 6 5 14 14 H 1.08998 * 109.75338 * 75.83779 * 13 7 6 15 15 N 1.46504 * 109.72220 * 315.20667 * 13 7 6 16 16 C 1.34775 * 119.99921 * 86.25465 * 15 13 7 17 17 O 1.21286 * 119.99955 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00025 * 180.02562 * 16 15 13 19 19 H 1.08995 * 109.46817 * 299.99938 * 18 16 15 20 20 C 1.53000 * 109.47123 * 59.99647 * 18 16 15 21 21 C 1.50695 * 109.47091 * 179.97438 * 18 16 15 22 22 H 1.08001 * 120.00002 * 0.02562 * 21 18 16 23 23 C 1.37873 * 120.00129 * 179.97438 * 21 18 16 24 24 N 1.31520 * 119.99953 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00355 * 179.97438 * 23 21 18 26 26 H 1.48508 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47024 * 120.00115 * 25 23 21 28 28 H 1.48503 * 109.47121 * 240.00347 * 25 23 21 29 29 H 1.08990 * 109.47020 * 300.00321 * 1 2 3 30 30 H 1.09000 * 109.46663 * 60.00102 * 1 2 3 31 31 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 32 32 H 1.08000 * 127.32746 * 359.97438 * 6 5 3 33 33 H 1.09003 * 109.56604 * 137.46214 * 10 8 7 34 34 H 1.08990 * 109.57055 * 257.81837 * 10 8 7 35 35 H 1.09002 * 109.45076 * 188.85525 * 11 10 8 36 36 H 1.08994 * 109.44939 * 68.92978 * 11 10 8 37 37 H 1.09006 * 109.53987 * 309.72843 * 12 11 10 38 38 H 1.08997 * 109.54489 * 189.47148 * 12 11 10 39 39 H 0.97000 * 119.99881 * 266.25801 * 15 13 7 40 40 H 1.09000 * 109.46921 * 179.97438 * 20 18 16 41 41 H 1.09001 * 109.47287 * 300.00472 * 20 18 16 42 42 H 1.09002 * 109.46828 * 60.00080 * 20 18 16 43 43 H 0.96997 * 119.99920 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5375 1.2776 0.0006 6 6 4.3197 2.4590 0.0001 7 6 5.5994 2.0390 0.0004 8 7 5.5889 0.6838 0.0020 9 7 4.3766 0.2597 0.0014 10 6 6.8025 -0.1456 0.0051 11 6 7.9901 0.7153 0.4451 12 6 8.0324 1.9982 -0.3904 13 6 6.8451 2.8888 -0.0005 14 1 7.0080 3.3046 0.9939 15 7 6.7018 3.9751 -0.9730 16 6 6.1040 5.1279 -0.6124 17 8 5.6842 5.2658 0.5171 18 6 5.9561 6.2451 -1.6129 19 1 6.9420 6.5564 -1.9581 20 6 5.1294 5.7568 -2.8042 21 6 5.2590 7.4124 -0.9631 22 1 4.9540 7.3516 0.0712 23 6 5.0116 8.5585 -1.6885 24 7 5.3836 8.6328 -2.9478 25 14 4.1469 10.0053 -0.8832 26 1 3.8341 9.6711 0.5296 27 1 5.0321 11.1968 -0.9252 28 1 2.8874 10.2981 -1.6135 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9651 3.4791 -0.0011 33 1 6.6757 -0.9755 0.7003 34 1 6.9834 -0.5317 -0.9980 35 1 8.9156 0.1578 0.3010 36 1 7.8817 0.9719 1.4988 37 1 7.9674 1.7462 -1.4489 38 1 8.9648 2.5286 -0.1972 39 1 7.0372 3.8645 -1.8764 40 1 5.0221 6.5650 -3.5276 41 1 5.6332 4.9122 -3.2743 42 1 4.1436 5.4454 -2.4589 43 1 5.2098 9.4392 -3.4580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889862368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:56 Heat of formation + Delta-G solvation = -45.126869 kcal Electronic energy + Delta-G solvation = -27611.795649 eV Core-core repulsion = 23658.922686 eV Total energy + Delta-G solvation = -3952.872963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.85906 -40.07869 -39.00085 -36.90306 -36.32214 -34.30037 -33.71383 -31.67395 -30.73262 -30.10152 -28.43321 -27.74122 -25.11313 -24.75410 -23.56372 -22.39863 -22.06306 -20.67427 -19.63675 -19.26703 -17.29857 -17.19130 -16.79991 -16.41658 -16.27970 -16.05885 -15.87716 -15.22628 -14.73664 -14.43892 -14.10893 -13.98483 -13.69528 -13.51575 -13.23191 -13.05861 -12.94157 -12.46433 -12.23096 -12.17612 -11.79503 -11.55366 -11.37350 -11.34599 -10.98775 -10.84640 -10.79783 -10.68455 -10.65647 -10.63278 -10.22424 -9.93217 -9.15688 -8.98146 -8.93820 -8.67587 -8.60144 -8.30707 -6.00573 -4.03352 1.37538 2.11809 2.19337 2.78839 3.25860 3.35776 3.43438 3.51710 3.63501 3.72398 4.03576 4.36759 4.43014 4.51038 4.52783 4.67301 4.83977 5.04799 5.06678 5.08860 5.13083 5.29418 5.31230 5.33536 5.43462 5.51731 5.56713 5.76400 5.80468 6.04730 6.23910 6.32787 6.52676 6.63861 6.70643 6.85501 6.91829 6.98537 7.48970 7.68898 7.78270 7.98894 8.00915 8.13919 8.41443 9.06098 9.17810 9.62452 11.07088 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.004223 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.036774 B = 6629.534304 C = 8587.239263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.556 3.444 4 O -0.492 6.492 5 C -0.015 4.015 6 C -0.137 4.137 7 C 0.001 3.999 8 N -0.276 5.276 9 N -0.236 5.236 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.134 4.134 13 C 0.216 3.784 14 H 0.109 0.891 15 N -0.736 5.736 16 C 0.522 3.478 17 O -0.536 6.536 18 C 0.031 3.969 19 H 0.053 0.947 20 C -0.132 4.132 21 C -0.499 4.499 22 H 0.076 0.924 23 C 0.058 3.942 24 N -0.897 5.897 25 Si 0.898 3.102 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.284 1.284 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.399 0.601 40 H 0.093 0.907 41 H 0.010 0.990 42 H 0.032 0.968 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -20.978 2.909 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.264 6.264 3 C 0.397 3.603 4 O -0.376 6.376 5 C -0.172 4.172 6 C -0.164 4.164 7 C -0.122 4.122 8 N -0.068 5.068 9 N -0.073 5.073 10 C 0.002 3.998 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.108 3.892 14 H 0.126 0.874 15 N -0.390 5.390 16 C 0.312 3.688 17 O -0.410 6.410 18 C 0.010 3.990 19 H 0.070 0.930 20 C -0.190 4.190 21 C -0.538 4.538 22 H 0.094 0.906 23 C -0.142 4.142 24 N -0.537 5.537 25 Si 0.726 3.274 26 H -0.195 1.195 27 H -0.211 1.211 28 H -0.210 1.210 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.187 0.813 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.112 0.888 41 H 0.029 0.971 42 H 0.052 0.948 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.798 -21.647 3.600 22.270 hybrid contribution -0.631 1.487 -0.185 1.625 sum 3.167 -20.160 3.415 20.691 Atomic orbital electron populations 1.23288 0.76189 1.03569 1.02766 1.86620 1.23208 1.32285 1.84335 1.19591 0.86334 0.81552 0.72778 1.90908 1.65341 1.35959 1.45384 1.20675 0.90612 0.91291 1.14626 1.21485 0.90260 0.99566 1.05126 1.21929 0.98169 0.84007 1.08119 1.45840 1.04805 1.05216 1.50940 1.73474 0.89638 1.26579 1.17649 1.22182 0.79849 0.93517 1.04301 1.21904 0.97296 0.96292 1.01611 1.21998 0.98918 0.95438 1.00830 1.19305 0.87662 0.86019 0.96238 0.87375 1.46351 1.63590 1.14522 1.14566 1.22099 0.74207 0.82398 0.90122 1.90562 1.47356 1.81087 1.22044 1.18878 0.98479 0.90334 0.91311 0.92969 1.21747 0.98188 0.99431 0.99678 1.21185 1.37080 0.96942 0.98559 0.90637 1.24937 0.95769 0.98625 0.94867 1.69879 1.47813 1.28056 1.07907 0.86418 0.79161 0.81937 0.79882 1.19509 1.21120 1.21048 0.91788 0.91729 0.88087 0.81347 0.88015 0.88730 0.88160 0.89965 0.90465 0.89168 0.76651 0.88844 0.97051 0.94843 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.35 -5.08 10.58 -40.55 -0.43 -5.51 16 3 C 0.56 9.65 7.97 34.54 0.28 9.93 16 4 O -0.49 -9.73 16.72 -19.26 -0.32 -10.05 16 5 C -0.02 -0.26 7.17 -82.70 -0.59 -0.86 16 6 C -0.14 -2.53 10.10 -39.52 -0.40 -2.93 16 7 C 0.00 0.02 6.26 -82.18 -0.51 -0.49 16 8 N -0.28 -3.59 3.74 -56.72 -0.21 -3.80 16 9 N -0.24 -3.65 12.04 33.45 0.40 -3.25 16 10 C 0.12 0.91 7.17 -3.70 -0.03 0.88 16 11 C -0.13 -0.78 5.91 -26.58 -0.16 -0.94 16 12 C -0.13 -1.09 5.48 -26.41 -0.14 -1.24 16 13 C 0.22 2.89 2.83 -68.80 -0.19 2.69 16 14 H 0.11 1.60 7.57 -51.93 -0.39 1.21 16 15 N -0.74 -11.75 4.89 -54.65 -0.27 -12.02 16 16 C 0.52 11.27 6.42 -10.99 -0.07 11.20 16 17 O -0.54 -13.27 14.31 5.55 0.08 -13.20 16 18 C 0.03 0.75 2.64 -92.93 -0.25 0.51 16 19 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 21 C -0.50 -14.07 8.37 -34.44 -0.29 -14.36 16 22 H 0.08 2.26 6.75 -52.49 -0.35 1.90 16 23 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 24 N -0.90 -25.17 11.32 55.43 0.63 -24.55 16 25 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.17 3.62 7.02 -52.49 -0.37 3.26 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 37 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.40 5.47 8.01 -40.82 -0.33 5.14 16 40 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 41 H 0.01 0.21 7.56 -51.93 -0.39 -0.19 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -35.19 360.28 -6.70 -41.89 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.93 Total: 3.38 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.06 Total: 4.65 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.55 Total: -43.61 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.67 Total: -28.75 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.19 -6.70 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889862368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.240 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds