Wall clock time and date at job start Tue Mar 31 2020 12:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49871 * 2 1 4 4 C 1.53191 * 109.49800 * 239.93520 * 2 1 3 5 5 N 1.46928 * 108.77237 * 185.38207 * 4 2 1 6 6 C 1.36938 * 120.62910 * 233.58028 * 5 4 2 7 7 H 1.07996 * 120.00265 * 152.60679 * 6 5 4 8 8 C 1.38815 * 120.00093 * 332.61683 * 6 5 4 9 9 N 1.31620 * 120.00190 * 159.30281 * 8 6 5 10 10 Si 1.86799 * 120.00017 * 339.30126 * 8 6 5 11 11 H 1.48504 * 109.47203 * 92.97710 * 10 8 6 12 12 H 1.48504 * 109.47098 * 212.97476 * 10 8 6 13 13 H 1.48494 * 109.47032 * 332.97631 * 10 8 6 14 14 C 1.46917 * 118.74040 * 53.61059 * 5 4 2 15 15 C 1.53197 * 108.77595 * 306.38758 * 14 5 4 16 16 C 1.53037 * 109.30811 * 54.63640 * 15 14 5 17 17 H 1.09005 * 109.45927 * 178.61297 * 16 15 14 18 18 N 1.46501 * 109.46314 * 58.65937 * 16 15 14 19 19 C 1.34774 * 119.99864 * 84.92622 * 18 16 15 20 20 O 1.21677 * 120.00530 * 0.02562 * 19 18 16 21 21 C 1.46779 * 119.99413 * 179.97438 * 19 18 16 22 22 C 1.36062 * 125.65175 * 179.72063 * 21 19 18 23 23 C 1.41726 * 106.62633 * 179.85661 * 22 21 19 24 24 C 1.47490 * 126.77712 * 180.15184 * 23 22 21 25 25 N 1.34773 * 120.00188 * 180.27439 * 24 23 22 26 26 O 1.21601 * 119.99879 * 0.27531 * 24 23 22 27 27 C 1.37808 * 106.45025 * 0.40052 * 23 22 21 28 28 O 1.33500 * 108.34519 * 359.75021 * 27 23 22 29 29 H 1.08997 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47183 * 300.00305 * 1 2 3 31 31 H 1.09008 * 109.47090 * 59.99997 * 1 2 3 32 32 H 1.09002 * 109.58386 * 305.16952 * 4 2 1 33 33 H 1.09003 * 109.58611 * 65.45252 * 4 2 1 34 34 H 0.97000 * 120.00566 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.58889 * 66.17691 * 14 5 4 36 36 H 1.09004 * 109.59033 * 186.60215 * 14 5 4 37 37 H 1.09005 * 109.49613 * 174.58683 * 15 14 5 38 38 H 1.09002 * 109.49602 * 294.65167 * 15 14 5 39 39 H 0.96994 * 119.99608 * 264.93052 * 18 16 15 40 40 H 1.08001 * 126.68817 * 359.97438 * 22 21 19 41 41 H 0.97005 * 119.99974 * 359.97438 * 25 24 23 42 42 H 0.97002 * 120.00246 * 180.02562 * 25 24 23 43 43 H 1.08002 * 125.82762 * 179.72946 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8281 -1.1701 6 6 4.2932 -0.3779 -2.1952 7 1 5.2999 -0.0422 -1.9948 8 6 3.7984 -0.3527 -3.4919 9 7 4.3557 0.4271 -4.3939 10 14 2.3417 -1.4257 -3.9568 11 1 1.0849 -0.6516 -3.7946 12 1 2.4773 -1.8589 -5.3708 13 1 2.3050 -2.6197 -3.0746 14 6 4.1059 -1.4255 0.0300 15 6 3.5714 -0.6941 1.2655 16 6 2.0414 -0.7230 1.2481 17 1 1.6587 -0.2246 2.1389 18 7 1.5796 -2.1131 1.2306 19 6 1.4521 -2.7954 2.3859 20 8 1.7202 -2.2568 3.4435 21 6 0.9888 -4.1881 2.3683 22 6 0.8243 -4.9830 3.4602 23 6 0.3623 -6.2354 2.9842 24 6 0.0374 -7.4233 3.7958 25 7 -0.3885 -8.5529 3.1967 26 8 0.1539 -7.3835 5.0056 27 6 0.2820 -6.1261 1.6128 28 8 0.6611 -4.8938 1.2666 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8901 32 1 1.6056 -1.7214 -1.2982 33 1 1.7611 -0.1589 -2.1391 34 1 4.0098 0.4450 -5.3000 35 1 3.8387 -2.4807 0.0859 36 1 5.1902 -1.3229 -0.0147 37 1 3.9345 -1.1888 2.1664 38 1 3.9165 0.3397 1.2538 39 1 1.3656 -2.5425 0.3876 40 1 1.0079 -4.7118 4.4894 41 1 -0.4818 -8.5845 2.2316 42 1 -0.6026 -9.3340 3.7305 43 1 -0.0335 -6.9047 0.9340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942717810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:38 Heat of formation + Delta-G solvation = -36.151156 kcal Electronic energy + Delta-G solvation = -27598.475717 eV Core-core repulsion = 23645.991970 eV Total energy + Delta-G solvation = -3952.483747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.14817 -40.05303 -39.47944 -37.94905 -34.54927 -34.26873 -33.30663 -32.55566 -31.99517 -30.77726 -29.76369 -26.32044 -25.44688 -24.39656 -23.77222 -22.41463 -21.26906 -20.99166 -20.26559 -19.11928 -18.98250 -17.47065 -16.90369 -16.82537 -16.75087 -16.33351 -15.74417 -15.16997 -15.01557 -14.80544 -14.50626 -14.21969 -13.93750 -13.70444 -13.55130 -13.38351 -13.33455 -13.03527 -12.78788 -12.27983 -12.00810 -11.59540 -11.41559 -11.26845 -10.75065 -10.61583 -10.58965 -10.41057 -10.34816 -10.25715 -10.17241 -10.08696 -9.75940 -9.53557 -9.20622 -8.86305 -8.66961 -7.04242 -6.00739 -3.36912 0.64624 1.26217 2.25696 2.87982 2.93814 3.12446 3.23536 3.26499 3.39924 3.42532 4.09808 4.26365 4.45512 4.59600 4.85266 4.94589 5.10509 5.19545 5.23947 5.25457 5.35367 5.40633 5.60521 5.80140 5.82059 5.84497 5.90524 5.97376 6.10141 6.20063 6.27765 6.31035 6.33179 6.35873 6.54363 6.57408 6.62111 6.65458 6.84726 6.86521 7.48677 7.81737 7.89687 8.06505 8.27515 8.87526 9.65496 10.02556 11.15271 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.003445 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.361844 B = 8126.364278 C = 8828.696118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.131 3.869 5 N -0.605 5.605 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.907 5.907 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.272 1.272 14 C 0.150 3.850 15 C -0.148 4.148 16 C 0.158 3.842 17 H 0.084 0.916 18 N -0.701 5.701 19 C 0.600 3.400 20 O -0.520 6.520 21 C -0.069 4.069 22 C -0.073 4.073 23 C -0.245 4.245 24 C 0.595 3.405 25 N -0.852 5.852 26 O -0.534 6.534 27 C 0.044 3.956 28 O -0.147 6.147 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.077 0.923 34 H 0.263 0.737 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.406 0.594 40 H 0.171 0.829 41 H 0.400 0.600 42 H 0.407 0.593 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.652 -13.967 10.537 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 H 0.110 0.890 4 C 0.005 3.995 5 N -0.328 5.328 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.197 1.197 14 C 0.024 3.976 15 C -0.188 4.188 16 C 0.055 3.945 17 H 0.102 0.898 18 N -0.352 5.352 19 C 0.385 3.615 20 O -0.398 6.398 21 C -0.121 4.121 22 C -0.094 4.094 23 C -0.250 4.250 24 C 0.380 3.620 25 N -0.416 5.416 26 O -0.411 6.411 27 C -0.030 4.030 28 O -0.040 6.040 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.242 0.758 40 H 0.189 0.811 41 H 0.228 0.772 42 H 0.239 0.761 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.236 -13.128 11.558 20.789 hybrid contribution -1.121 -1.383 -1.117 2.102 sum -12.358 -14.511 10.441 21.732 Atomic orbital electron populations 1.21801 0.95482 1.01428 1.01647 1.21976 0.94958 1.01245 0.95783 0.89006 1.21367 0.85127 0.96689 0.96273 1.44363 1.00463 1.70156 1.17791 1.18931 0.98596 1.36157 0.85097 0.89606 1.25289 0.97957 0.98651 0.95672 1.69834 1.43206 1.37751 1.04173 0.86974 0.82661 0.82375 0.76832 1.21572 1.23135 1.19675 1.20895 0.97318 0.93926 0.85461 1.22403 0.94426 1.02450 0.99498 1.21035 0.94822 0.79827 0.98863 0.89804 1.46117 1.65970 1.14619 1.08473 1.16503 0.78061 0.82097 0.84847 1.90883 1.51209 1.67241 1.30498 1.22221 1.10887 0.94722 0.84233 1.21828 0.96894 0.90305 1.00357 1.20607 1.13820 0.97086 0.93472 1.17226 0.75907 0.82012 0.86811 1.43658 1.71050 1.15047 1.11815 1.90860 1.52759 1.83578 1.13937 1.25039 0.97154 0.85751 0.95058 1.83989 1.63059 1.22073 1.34862 0.93158 0.92798 0.92370 0.96264 0.90474 0.92733 0.96134 0.91765 0.91908 0.90590 0.75798 0.81140 0.77213 0.76115 0.76518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.06 37.16 0.34 -1.64 16 2 C -0.12 -1.92 2.67 -90.50 -0.24 -2.16 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.13 2.62 3.19 -3.71 -0.01 2.60 16 5 N -0.60 -13.51 2.77 -172.32 -0.48 -13.98 16 6 C -0.26 -6.98 10.03 -15.06 -0.15 -7.13 16 7 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 8 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 9 N -0.91 -27.10 13.97 55.49 0.78 -26.33 16 10 Si 0.88 21.30 24.35 -169.99 -4.14 17.16 16 11 H -0.29 -6.66 6.62 56.52 0.37 -6.29 16 12 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.27 -6.34 6.64 56.52 0.38 -5.96 16 14 C 0.15 2.85 6.26 -3.71 -0.02 2.83 16 15 C -0.15 -2.43 5.77 -26.61 -0.15 -2.58 16 16 C 0.16 2.42 2.21 -67.89 -0.15 2.27 16 17 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 18 N -0.70 -10.15 3.59 -55.04 -0.20 -10.35 16 19 C 0.60 8.86 7.75 -12.81 -0.10 8.76 16 20 O -0.52 -8.98 16.51 5.21 0.09 -8.90 16 21 C -0.07 -0.88 7.09 -36.91 -0.26 -1.14 16 22 C -0.07 -0.89 10.41 -39.03 -0.41 -1.30 16 23 C -0.25 -2.40 6.16 -104.95 -0.65 -3.05 16 24 C 0.59 5.88 8.09 -12.49 -0.10 5.78 16 25 N -0.85 -4.10 8.86 30.45 0.27 -3.83 16 26 O -0.53 -7.68 17.77 5.28 0.09 -7.59 16 27 C 0.04 0.32 11.64 30.57 0.36 0.67 16 28 O -0.15 -1.55 10.33 6.20 0.06 -1.49 16 29 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.02 0.38 5.57 -51.93 -0.29 0.09 16 33 H 0.08 1.72 4.50 -51.93 -0.23 1.49 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.02 0.39 7.74 -51.93 -0.40 -0.02 16 36 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.41 5.77 6.47 -40.82 -0.26 5.51 16 40 H 0.17 2.17 8.06 -52.49 -0.42 1.74 16 41 H 0.40 0.57 7.78 -40.82 -0.32 0.25 16 42 H 0.41 1.51 8.93 -40.82 -0.36 1.15 16 43 H 0.22 0.38 7.46 -52.49 -0.39 -0.01 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -34.97 350.72 -5.49 -40.46 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.61 Total: 5.08 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.65 Total: 4.48 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.37 Total: -54.49 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.24 Total: -17.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.97 -5.49 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942717810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.308 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds