Wall clock time and date at job start Tue Mar 31 2020 12:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.70288 * 2 1 4 4 C 1.53195 * 109.58793 * 239.63790 * 2 1 3 5 5 C 1.53036 * 109.31424 * 185.58109 * 4 2 1 6 6 H 1.09003 * 109.45664 * 301.34856 * 5 4 2 7 7 N 1.46494 * 109.46109 * 181.37341 * 5 4 2 8 8 C 1.34775 * 120.00199 * 154.96801 * 7 5 4 9 9 O 1.21603 * 120.00110 * 0.02562 * 8 7 5 10 10 C 1.47490 * 120.00112 * 180.02562 * 8 7 5 11 11 C 1.37808 * 126.77444 * 0.02819 * 10 8 7 12 12 O 1.33498 * 108.34075 * 179.97438 * 11 10 8 13 13 C 1.34881 * 109.89063 * 0.02562 * 12 11 10 14 14 C 1.46779 * 125.65447 * 180.02562 * 13 12 11 15 15 N 1.34772 * 119.99623 * 359.97213 * 14 13 12 16 16 O 1.21678 * 119.99835 * 179.97438 * 14 13 12 17 17 C 1.36057 * 108.69097 * 359.75952 * 13 12 11 18 18 C 1.53039 * 109.52728 * 61.35709 * 5 4 2 19 19 C 1.53162 * 109.33103 * 298.63139 * 18 5 4 20 20 N 1.46925 * 108.76665 * 54.64024 * 19 18 5 21 21 C 1.36942 * 120.62706 * 126.41627 * 20 19 18 22 22 H 1.07992 * 119.99803 * 209.03103 * 21 20 19 23 23 C 1.38815 * 119.99905 * 29.03460 * 21 20 19 24 24 N 1.31617 * 120.00057 * 15.04960 * 23 21 20 25 25 Si 1.86804 * 119.99704 * 195.05293 * 23 21 20 26 26 H 1.48494 * 109.46850 * 89.99868 * 25 23 21 27 27 H 1.48497 * 109.46780 * 209.99982 * 25 23 21 28 28 H 1.48501 * 109.46938 * 329.99897 * 25 23 21 29 29 H 1.09000 * 109.47553 * 180.35866 * 1 2 3 30 30 H 1.09002 * 109.47031 * 300.36265 * 1 2 3 31 31 H 1.09000 * 109.46729 * 60.35770 * 1 2 3 32 32 H 1.09000 * 109.49579 * 65.62962 * 4 2 1 33 33 H 1.08997 * 109.49847 * 305.53589 * 4 2 1 34 34 H 0.97006 * 120.00157 * 334.97604 * 7 5 4 35 35 H 1.07995 * 125.82701 * 359.97438 * 11 10 8 36 36 H 0.97003 * 120.00760 * 359.97438 * 15 14 13 37 37 H 0.97001 * 119.99833 * 180.02562 * 15 14 13 38 38 H 1.08002 * 126.68650 * 180.26460 * 17 13 12 39 39 H 1.09002 * 109.49621 * 58.59817 * 18 5 4 40 40 H 1.09005 * 109.49850 * 178.69046 * 18 5 4 41 41 H 1.08998 * 109.58462 * 294.85840 * 19 18 5 42 42 H 1.09000 * 109.70574 * 174.49841 * 19 18 5 43 43 H 0.97000 * 119.99729 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8482 -1.1700 6 1 4.0061 0.1472 -1.0992 7 7 4.0652 -1.5163 -2.3750 8 6 5.3292 -1.3025 -2.7908 9 8 6.0568 -0.5552 -2.1655 10 6 5.8301 -1.9747 -4.0043 11 6 5.1310 -2.8431 -4.8145 12 8 5.9354 -3.2316 -5.8066 13 6 7.1432 -2.6460 -5.6742 14 6 8.2870 -2.8306 -6.5754 15 7 8.1783 -3.6448 -7.6439 16 8 9.3331 -2.2486 -6.3577 17 6 7.1237 -1.8512 -4.5701 18 6 3.9566 -1.6657 0.0638 19 6 3.4650 -0.9470 1.3239 20 7 2.0225 -0.6995 1.1945 21 6 1.1536 -1.1126 2.1691 22 1 0.1360 -1.3673 1.9125 23 6 1.5809 -1.2038 3.4867 24 7 2.7037 -0.6247 3.8559 25 14 0.5624 -2.1485 4.7356 26 1 0.9976 -3.5681 4.7569 27 1 0.7527 -1.5520 6.0821 28 1 -0.8726 -2.0761 4.3603 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5195 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 1.7661 -0.1670 -2.1368 33 1 1.6030 -1.7254 -1.2912 34 1 3.4849 -2.1126 -2.8737 35 1 4.1073 -3.1558 -4.6713 36 1 7.3445 -4.1091 -7.8172 37 1 8.9343 -3.7671 -8.2392 38 1 7.9361 -1.2453 -4.1967 39 1 3.4980 -2.6528 0.0056 40 1 5.0409 -1.7696 0.1043 41 1 3.9903 0.0019 1.4317 42 1 3.6519 -1.5697 2.1987 43 1 3.0024 -0.6887 4.7766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947563624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:48 Heat of formation + Delta-G solvation = -41.490566 kcal Electronic energy + Delta-G solvation = -26699.656430 eV Core-core repulsion = 22746.941149 eV Total energy + Delta-G solvation = -3952.715281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.18405 -39.71096 -39.49432 -37.63953 -34.65054 -34.33504 -33.45214 -32.44199 -31.48246 -30.38943 -29.31496 -26.42543 -25.10793 -24.14545 -23.74784 -21.96514 -21.30581 -20.72651 -19.98665 -19.46243 -18.78800 -17.51886 -16.89803 -16.77886 -16.45495 -16.06335 -15.77093 -15.08376 -14.88665 -14.67488 -14.54609 -13.96540 -13.78407 -13.58625 -13.49905 -13.36959 -12.97316 -12.80065 -12.69371 -11.62520 -11.25252 -11.13137 -10.94571 -10.93105 -10.91351 -10.68657 -10.38975 -10.31084 -10.27167 -10.18990 -10.06574 -9.97754 -9.75649 -9.41384 -9.18990 -8.76301 -8.43206 -6.65754 -5.77300 -3.21798 0.55299 1.33439 2.13353 2.69537 2.93908 3.28353 3.33273 3.37599 3.43800 3.45395 4.16270 4.26745 4.48265 4.61736 5.10482 5.13364 5.26903 5.33242 5.38106 5.42695 5.55576 5.73712 5.80985 5.97049 6.09376 6.12739 6.20611 6.28437 6.29012 6.37659 6.39803 6.47799 6.61497 6.78164 6.79008 6.85235 7.00793 7.07533 7.37792 7.60273 7.64344 7.70739 7.81848 8.29424 8.46500 9.21929 9.85441 10.42159 11.31186 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.002401 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.333007 B =11657.092699 C =11954.019277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.084 0.916 7 N -0.719 5.719 8 C 0.580 3.420 9 O -0.528 6.528 10 C -0.230 4.230 11 C 0.045 3.955 12 O -0.155 6.155 13 C -0.096 4.096 14 C 0.613 3.387 15 N -0.844 5.844 16 O -0.518 6.518 17 C -0.059 4.059 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.391 0.609 35 H 0.222 0.778 36 H 0.407 0.593 37 H 0.410 0.590 38 H 0.172 0.828 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -7.450 -23.006 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.102 0.898 7 N -0.368 5.368 8 C 0.366 3.634 9 O -0.405 6.405 10 C -0.234 4.234 11 C -0.028 4.028 12 O -0.049 6.049 13 C -0.147 4.147 14 C 0.397 3.603 15 N -0.408 5.408 16 O -0.395 6.395 17 C -0.080 4.080 18 C -0.187 4.187 19 C 0.047 3.953 20 N -0.311 5.311 21 C -0.381 4.381 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.238 0.762 36 H 0.236 0.764 37 H 0.242 0.758 38 H 0.189 0.811 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.257 -6.624 -22.317 23.666 hybrid contribution -0.899 -1.069 0.266 1.422 sum 3.358 -7.693 -22.052 23.595 Atomic orbital electron populations 1.21790 0.95730 1.01424 1.00323 1.20359 0.93078 0.93618 0.86625 0.95499 1.22386 0.93530 1.01659 0.99784 1.21100 0.94310 0.96859 0.82915 0.89822 1.46176 1.12604 1.48654 1.29396 1.17213 0.82140 0.81190 0.82849 1.90832 1.56204 1.37020 1.56464 1.20917 0.96122 1.05625 1.00775 1.25118 0.96223 0.95399 0.86077 1.83880 1.20678 1.56468 1.43872 1.21780 0.85921 1.04833 1.02207 1.16475 0.84845 0.79061 0.79902 1.43667 1.19501 1.48871 1.28731 1.90963 1.27393 1.48177 1.72974 1.21951 0.97180 0.96654 0.92172 1.22573 0.99848 0.99553 0.96743 1.20764 0.83177 0.97401 0.93914 1.44181 1.03014 1.64875 1.19046 1.19174 0.94828 1.37847 0.86231 0.91185 1.25110 0.97840 0.99721 0.97011 1.70014 1.23332 1.44368 1.16932 0.86310 0.79794 0.79763 0.80995 1.21538 1.21810 1.20475 0.92761 0.91859 0.94310 0.92637 0.91778 0.77527 0.76205 0.76396 0.75845 0.81079 0.92646 0.92802 0.96139 0.89072 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.94 37.16 0.30 -2.09 16 2 C 0.17 3.36 3.50 -67.60 -0.24 3.12 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.10 4.84 -26.61 -0.13 -2.22 16 5 C 0.15 2.52 2.42 -67.89 -0.16 2.35 16 6 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 7 N -0.72 -9.33 5.07 -54.83 -0.28 -9.61 16 8 C 0.58 8.53 7.78 -12.49 -0.10 8.43 16 9 O -0.53 -10.21 16.60 5.27 0.09 -10.12 16 10 C -0.23 -2.61 6.16 -104.95 -0.65 -3.25 16 11 C 0.04 0.32 11.64 30.58 0.36 0.68 16 12 O -0.15 -1.18 10.33 6.19 0.06 -1.12 16 13 C -0.10 -0.95 7.09 -36.91 -0.26 -1.21 16 14 C 0.61 5.91 8.06 -12.81 -0.10 5.81 16 15 N -0.84 -4.25 8.87 30.28 0.27 -3.98 16 16 O -0.52 -6.99 17.68 5.21 0.09 -6.90 16 17 C -0.06 -0.70 10.41 -39.03 -0.41 -1.10 16 18 C -0.15 -2.85 5.65 -26.63 -0.15 -3.00 16 19 C 0.17 4.14 5.29 -3.73 -0.02 4.12 16 20 N -0.59 -14.06 2.99 -164.79 -0.49 -14.55 16 21 C -0.25 -6.56 8.61 -15.06 -0.13 -6.69 16 22 H 0.07 1.77 6.20 -52.49 -0.33 1.45 16 23 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 24 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 25 Si 0.90 21.33 29.58 -169.99 -5.03 16.31 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.05 0.96 7.40 -51.93 -0.38 0.57 16 30 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.39 3.56 7.55 -40.82 -0.31 3.25 16 35 H 0.22 0.62 7.46 -52.49 -0.39 0.23 16 36 H 0.41 1.09 8.57 -40.82 -0.35 0.74 16 37 H 0.41 1.40 8.93 -40.82 -0.36 1.03 16 38 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -34.85 358.69 -6.79 -41.64 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.75 Total: 3.39 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.78 Total: 4.90 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.12 Total: -53.51 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.24 Total: -18.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.85 -6.79 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947563624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.145 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds