Wall clock time and date at job start Tue Mar 31 2020 12:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.52243 * 301.35797 * 16 2 1 18 18 N 1.46502 * 109.49596 * 61.43772 * 16 2 1 19 19 C 1.34770 * 119.99898 * 204.83689 * 18 16 2 20 20 O 1.21609 * 120.00118 * 0.02562 * 19 18 16 21 21 C 1.47296 * 119.99871 * 180.02562 * 19 18 16 22 22 C 1.36567 * 125.80426 * 180.02562 * 21 19 18 23 23 C 1.40061 * 106.92782 * 179.97438 * 22 21 19 24 24 C 1.36570 * 106.92338 * 0.02562 * 23 22 21 25 25 C 1.47297 * 125.80628 * 179.97438 * 24 23 22 26 26 N 1.34774 * 119.99884 * 179.97438 * 25 24 23 27 27 O 1.21612 * 119.99784 * 359.97438 * 25 24 23 28 28 O 1.34550 * 108.39005 * 359.76676 * 24 23 22 29 29 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 30 30 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 31 31 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 33 33 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 34 34 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 35 35 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 38 38 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 39 39 H 0.97007 * 119.99972 * 24.83391 * 18 16 2 40 40 H 1.08002 * 126.53815 * 359.95997 * 22 21 19 41 41 H 1.08001 * 126.53945 * 179.97438 * 23 22 21 42 42 H 0.96999 * 120.00440 * 0.02562 * 26 25 24 43 43 H 0.97001 * 119.99296 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6570 -0.2212 2.1402 18 7 1.5801 -2.1117 1.2343 19 6 1.4546 -2.7931 2.3903 20 8 1.7225 -2.2533 3.4465 21 6 0.9929 -4.1918 2.3742 22 6 0.8233 -4.9897 3.4695 23 6 0.3743 -6.2319 3.0035 24 6 0.2895 -6.1393 1.6435 25 6 -0.1413 -7.2130 0.7319 26 7 -0.1820 -6.9927 -0.5971 27 8 -0.4602 -8.2983 1.1784 28 8 0.6619 -4.8990 1.2785 29 1 -0.3634 0.5144 0.8896 30 1 -0.3632 0.5133 -0.8904 31 1 -0.3634 -1.0277 0.0005 32 1 1.6593 -0.2219 -2.1447 33 1 1.6981 -1.7560 -1.2419 34 1 3.9144 0.3410 -1.3671 35 1 3.9439 -1.2830 -2.0984 36 1 6.6845 -1.5121 2.6270 37 1 3.9415 -1.2845 2.0986 38 1 3.9142 0.3409 1.3675 39 1 1.3660 -2.5422 0.3918 40 1 1.0017 -4.7154 4.4987 41 1 0.1405 -7.0980 3.6048 42 1 0.0727 -6.1272 -0.9533 43 1 -0.4653 -7.7000 -1.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967287007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:57 Heat of formation + Delta-G solvation = -64.190957 kcal Electronic energy + Delta-G solvation = -28281.063990 eV Core-core repulsion = 24327.364346 eV Total energy + Delta-G solvation = -3953.699644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.95348 -41.10667 -40.35174 -39.10388 -35.98268 -35.04357 -34.57201 -34.04044 -32.84488 -31.73067 -30.48434 -28.91756 -26.26446 -25.57389 -23.94443 -23.14879 -22.74544 -22.27949 -21.40967 -20.33381 -19.89394 -18.90337 -18.61633 -17.97596 -17.76918 -16.94387 -16.73431 -16.12910 -15.92906 -15.68495 -15.52507 -15.40167 -15.01637 -14.80780 -14.57370 -14.40990 -14.27776 -14.21711 -14.04445 -13.57772 -13.14635 -13.01203 -12.74189 -12.61405 -12.49330 -12.26247 -11.97141 -11.83931 -11.55823 -11.44874 -11.27708 -11.21774 -11.06494 -10.91594 -10.54560 -10.20673 -9.85274 -8.63692 -7.87104 -5.30996 -0.52042 0.77591 1.16322 1.38698 1.42563 1.48732 1.94210 1.97176 2.16183 2.42801 2.47642 3.29111 3.52890 3.69205 3.69342 3.83896 3.91215 3.99593 4.13396 4.34026 4.39983 4.51582 4.68036 4.69778 4.72181 4.81555 4.88952 4.97617 5.06666 5.09179 5.19389 5.24925 5.26591 5.37324 5.47309 5.50671 5.58396 5.65955 5.69796 5.72751 6.16790 6.39446 6.47725 7.01714 7.06188 7.14934 7.88257 8.38459 9.17939 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005326 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.368364 B = 5255.751694 C = 6369.024307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.247 4.247 8 H 0.069 0.931 9 C -0.048 4.048 10 N -0.932 5.932 11 Si 0.948 3.052 12 H -0.282 1.282 13 H -0.302 1.302 14 H -0.271 1.271 15 C 0.169 3.831 16 C 0.134 3.866 17 H 0.074 0.926 18 N -0.672 5.672 19 C 0.592 3.408 20 O -0.556 6.556 21 C -0.042 4.042 22 C -0.141 4.141 23 C -0.127 4.127 24 C -0.062 4.062 25 C 0.614 3.386 26 N -0.816 5.816 27 O -0.552 6.552 28 O -0.145 6.145 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.056 0.944 36 H 0.245 0.755 37 H 0.050 0.950 38 H 0.003 0.997 39 H 0.410 0.590 40 H 0.175 0.825 41 H 0.187 0.813 42 H 0.420 0.580 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 -4.287 -7.150 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.324 5.324 7 C -0.378 4.378 8 H 0.087 0.913 9 C -0.244 4.244 10 N -0.578 5.578 11 Si 0.777 3.223 12 H -0.209 1.209 13 H -0.229 1.229 14 H -0.196 1.196 15 C 0.042 3.958 16 C 0.028 3.972 17 H 0.092 0.908 18 N -0.321 5.321 19 C 0.377 3.623 20 O -0.437 6.437 21 C -0.096 4.096 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.116 4.116 25 C 0.397 3.603 26 N -0.380 5.380 27 O -0.432 6.432 28 O -0.040 6.040 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.247 0.753 40 H 0.193 0.807 41 H 0.204 0.796 42 H 0.251 0.749 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -16.417 -4.370 -6.249 18.101 hybrid contribution 1.252 -0.651 0.131 1.417 sum -15.165 -5.021 -6.118 17.106 Atomic orbital electron populations 1.21778 0.93005 1.02116 1.02471 1.21343 0.96885 0.99307 0.93098 0.90079 1.22023 0.95518 1.00447 0.97542 1.21158 0.93761 0.95973 0.88114 1.44172 1.48032 1.39457 1.00695 1.19387 1.09060 1.03403 1.05948 0.91325 1.25655 0.98752 0.99519 1.00458 1.70149 1.38399 1.30627 1.18646 0.85568 0.79069 0.81375 0.76295 1.20851 1.22876 1.19589 1.20905 0.89765 0.95440 0.89723 1.21670 0.95539 0.80614 0.99387 0.90820 1.45664 1.64416 1.13955 1.08045 1.16867 0.77830 0.82738 0.84819 1.90836 1.52697 1.68103 1.32052 1.22408 1.07691 0.93811 0.85731 1.22189 1.00859 0.92550 1.00547 1.22201 1.00257 0.99198 0.93058 1.22542 1.08765 0.84670 0.95600 1.16520 0.76826 0.84089 0.82818 1.43531 1.68350 1.20409 1.05754 1.90902 1.50861 1.24135 1.77283 1.83997 1.64457 1.21497 1.34097 0.92950 0.90451 0.92641 0.88880 0.91976 0.96795 0.92507 0.94552 0.93179 0.97904 0.75261 0.80745 0.79599 0.74868 0.74279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.05 71.98 0.65 -2.05 16 2 C -0.09 -2.31 2.48 -10.66 -0.03 -2.34 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -3.00 5.23 30.77 0.16 -2.83 16 5 C 0.13 4.87 6.50 86.36 0.56 5.43 16 6 N -0.60 -27.94 2.91 -699.11 -2.04 -29.98 16 7 C -0.25 -13.05 9.58 84.04 0.81 -12.24 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 9 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 10 N -0.93 -56.30 11.20 21.65 0.24 -56.06 16 11 Si 0.95 45.84 29.59 68.60 2.03 47.87 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 15 C 0.17 7.97 4.90 86.36 0.42 8.39 16 16 C 0.13 4.74 2.24 45.07 0.10 4.84 16 17 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 18 N -0.67 -22.39 4.25 -445.58 -1.89 -24.29 16 19 C 0.59 21.91 7.77 86.63 0.67 22.59 16 20 O -0.56 -24.55 16.53 -4.06 -0.07 -24.61 16 21 C -0.04 -1.32 7.14 24.26 0.17 -1.15 16 22 C -0.14 -3.97 10.60 22.32 0.24 -3.73 16 23 C -0.13 -3.13 10.60 22.32 0.24 -2.89 16 24 C -0.06 -1.53 7.14 24.26 0.17 -1.36 16 25 C 0.61 13.71 8.08 86.63 0.70 14.41 16 26 N -0.82 -11.08 8.87 -175.98 -1.56 -12.64 16 27 O -0.55 -15.57 17.70 -4.07 -0.07 -15.64 16 28 O -0.14 -3.82 10.14 -7.32 -0.07 -3.89 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.06 7.54 -2.39 -0.02 1.04 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.53 6.41 -2.39 -0.02 1.52 16 34 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 36 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.41 11.83 6.40 -92.70 -0.59 11.24 16 40 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 42 H 0.42 4.31 8.59 -92.71 -0.80 3.52 16 43 H 0.42 3.88 8.93 -92.71 -0.83 3.05 16 Total: -1.00 -73.59 359.33 0.72 -72.88 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -1.14 Total: 21.58 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 5.29 Total: 24.78 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -5.25 Total: -122.97 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.21 Total: -44.14 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.59 0.72 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967287007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.687 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds