Wall clock time and date at job start Tue Mar 31 2020 12:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.86980 * 2 1 4 4 C 1.54326 * 109.88351 * 121.02164 * 2 1 3 5 5 H 1.09002 * 110.71330 * 215.91822 * 4 2 1 6 6 N 1.46498 * 110.71885 * 339.01736 * 4 2 1 7 7 C 1.36933 * 119.99467 * 202.56174 * 6 4 2 8 8 H 1.07995 * 120.00547 * 359.97438 * 7 6 4 9 9 C 1.38821 * 119.99726 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00079 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99747 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46870 * 179.97438 * 11 9 7 13 13 H 1.48495 * 109.47325 * 300.00154 * 11 9 7 14 14 H 1.48501 * 109.47219 * 60.00346 * 11 9 7 15 15 C 1.55158 * 103.10192 * 97.46762 * 4 2 1 16 16 C 1.55130 * 101.48362 * 35.27923 * 15 4 2 17 17 N 1.47027 * 110.00839 * 238.90940 * 2 1 3 18 18 C 1.34774 * 125.64923 * 59.41218 * 17 2 1 19 19 O 1.21610 * 119.99883 * 354.48504 * 18 17 2 20 20 C 1.47376 * 120.00006 * 174.48230 * 18 17 2 21 21 C 1.47027 * 127.19018 * 353.38694 * 20 18 17 22 22 C 1.34176 * 105.95154 * 179.88739 * 21 20 18 23 23 O 1.34217 * 109.12656 * 0.37813 * 22 21 20 24 24 C 1.33649 * 110.90803 * 359.74587 * 23 22 21 25 25 C 1.50700 * 125.80282 * 179.97438 * 24 23 22 26 26 C 1.50702 * 109.47175 * 269.99944 * 25 24 23 27 27 N 1.34771 * 119.99801 * 179.97438 * 26 25 24 28 28 O 1.21275 * 119.99707 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.46936 * 298.97627 * 1 2 3 30 30 H 1.08995 * 109.47395 * 58.97426 * 1 2 3 31 31 H 1.09000 * 109.46971 * 178.97932 * 1 2 3 32 32 H 0.96998 * 120.00222 * 22.55695 * 6 4 2 33 33 H 0.97002 * 120.00308 * 179.97438 * 10 9 7 34 34 H 1.08993 * 111.00541 * 153.48357 * 15 4 2 35 35 H 1.08999 * 111.00213 * 277.34549 * 15 4 2 36 36 H 1.09001 * 110.41981 * 204.29256 * 16 15 4 37 37 H 1.09005 * 110.20446 * 82.04306 * 16 15 4 38 38 H 1.07993 * 127.02238 * 0.02562 * 21 20 18 39 39 H 1.08002 * 125.43726 * 180.12817 * 22 21 20 40 40 H 1.08999 * 109.47253 * 30.00546 * 25 24 23 41 41 H 1.09008 * 109.47290 * 150.00030 * 25 24 23 42 42 H 0.97008 * 120.00478 * 0.02562 * 27 26 25 43 43 H 0.96997 * 120.00062 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9625 -0.2775 1.6220 6 7 1.0281 -0.8029 2.2871 7 6 1.3901 -0.9878 3.5947 8 1 2.4324 -1.0936 3.8568 9 6 0.4171 -1.0394 4.5836 10 7 -0.8531 -0.9100 4.2644 11 14 0.9109 -1.2924 6.3673 12 1 -0.3050 -1.3094 7.2198 13 1 1.6296 -2.5847 6.5034 14 1 1.8005 -0.1836 6.7968 15 6 2.3592 -2.1680 0.6977 16 6 2.8618 -1.8471 -0.7345 17 7 2.0331 -0.7134 -1.1831 18 6 1.7782 -0.3857 -2.4653 19 8 0.9977 0.5115 -2.7199 20 6 2.4454 -1.1145 -3.5587 21 6 3.5072 -2.1240 -3.4358 22 6 3.7979 -2.5077 -4.6883 23 8 3.0250 -1.8257 -5.5478 24 6 2.2109 -0.9893 -4.8968 25 6 1.2052 -0.0645 -5.5327 26 6 1.8563 1.2636 -5.8214 27 7 1.1431 2.2533 -6.3944 28 8 3.0222 1.4414 -5.5391 29 1 -0.3633 0.4979 0.8990 30 1 -0.3634 0.5296 -0.8806 31 1 -0.3633 -1.0275 -0.0183 32 1 0.0919 -0.7082 2.0518 33 1 -1.5330 -0.9463 4.9553 34 1 3.1358 -2.6552 1.2873 35 1 1.4553 -2.7763 0.6660 36 1 2.7165 -2.7059 -1.3898 37 1 3.9135 -1.5617 -0.7093 38 1 3.9591 -2.4846 -2.5237 39 1 4.5387 -3.2447 -4.9614 40 1 0.8460 -0.5031 -6.4637 41 1 0.3659 0.0825 -4.8528 42 1 0.2106 2.1110 -6.6206 43 1 1.5623 3.1080 -6.5806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986757704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:22 Heat of formation + Delta-G solvation = -56.593416 kcal Electronic energy + Delta-G solvation = -27550.142973 eV Core-core repulsion = 23596.772784 eV Total energy + Delta-G solvation = -3953.370190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59438 -41.14574 -40.40803 -38.79131 -35.98322 -34.76206 -34.29902 -33.34023 -32.80668 -32.07092 -30.63883 -28.47571 -26.85141 -25.69447 -24.80230 -23.08044 -22.63940 -21.92442 -20.48188 -19.90051 -19.44570 -18.67818 -18.24855 -17.99826 -17.13459 -17.08828 -16.76831 -16.67976 -16.29286 -16.12218 -15.68249 -15.32037 -15.02201 -14.74022 -14.56967 -14.44191 -14.06372 -13.85917 -13.79621 -13.55407 -13.14612 -12.96402 -12.89338 -12.82062 -12.72169 -12.39566 -12.11395 -12.06132 -11.59139 -11.54317 -11.25935 -10.94509 -10.91405 -10.74348 -10.69665 -9.80523 -9.48230 -9.00748 -7.92703 -5.21889 0.26461 1.15986 1.50012 1.52732 1.57460 1.58541 1.72942 2.00295 2.24836 2.58695 2.69942 3.36239 3.45634 3.50896 3.74478 3.85095 3.90460 3.96766 4.02313 4.17049 4.20016 4.34111 4.36885 4.38772 4.54866 4.63221 4.66165 4.68029 4.78784 4.87663 4.98556 5.05033 5.19760 5.25474 5.31930 5.40122 5.49950 5.55179 5.85340 6.02999 6.28609 6.39588 6.54226 7.10549 7.29235 7.36055 8.08981 8.33585 9.30778 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002966 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.216370 B = 9437.448407 C =10222.586129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 H 0.061 0.939 4 C 0.166 3.834 5 H 0.067 0.933 6 N -0.731 5.731 7 C -0.241 4.241 8 H 0.081 0.919 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.974 3.026 12 H -0.299 1.299 13 H -0.276 1.276 14 H -0.279 1.279 15 C -0.143 4.143 16 C 0.099 3.901 17 N -0.602 5.602 18 C 0.595 3.405 19 O -0.575 6.575 20 C -0.246 4.246 21 C -0.211 4.211 22 C -0.020 4.020 23 O -0.175 6.175 24 C 0.076 3.924 25 C -0.068 4.068 26 C 0.525 3.475 27 N -0.832 5.832 28 O -0.590 6.590 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.381 0.619 33 H 0.251 0.749 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.184 0.816 39 H 0.254 0.746 40 H 0.155 0.845 41 H 0.137 0.863 42 H 0.421 0.579 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -3.051 -24.316 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.031 3.969 3 H 0.079 0.921 4 C 0.056 3.944 5 H 0.085 0.915 6 N -0.374 5.374 7 C -0.373 4.373 8 H 0.099 0.901 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.803 3.197 12 H -0.226 1.226 13 H -0.202 1.202 14 H -0.206 1.206 15 C -0.184 4.184 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.387 3.613 19 O -0.457 6.457 20 C -0.250 4.250 21 C -0.229 4.229 22 C -0.085 4.085 23 O -0.071 6.071 24 C 0.023 3.977 25 C -0.107 4.107 26 C 0.310 3.690 27 N -0.396 5.396 28 O -0.471 6.471 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.217 0.783 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.201 0.799 39 H 0.270 0.730 40 H 0.172 0.828 41 H 0.155 0.845 42 H 0.252 0.748 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.413 -2.674 -24.413 25.653 hybrid contribution -0.686 0.430 1.357 1.581 sum 6.727 -2.243 -23.056 24.121 Atomic orbital electron populations 1.21817 0.95304 1.01413 1.01481 1.21610 0.94693 0.95462 0.85133 0.92067 1.21374 0.92048 0.94271 0.86750 0.91522 1.42821 1.05244 1.86633 1.02654 1.19627 0.93067 1.39966 0.84625 0.90123 1.25550 0.95312 1.03702 1.02085 1.69814 0.99998 1.58950 1.33331 0.85210 0.76291 0.78254 0.79969 1.22586 1.20159 1.20555 1.23419 1.01540 0.98632 0.94800 1.22864 0.95091 0.88836 0.95479 1.48287 1.50170 1.30897 1.04049 1.17229 0.80580 0.82254 0.81202 1.90662 1.37896 1.33376 1.83745 1.21126 1.05091 1.05818 0.92997 1.23554 0.99434 0.99368 1.00563 1.24773 0.97433 0.99306 0.87022 1.83729 1.41336 1.43405 1.38599 1.21982 0.93404 0.92806 0.89554 1.20387 0.95592 0.89353 1.05417 1.20464 0.86027 0.86758 0.75778 1.43558 1.16561 1.15893 1.63609 1.90752 1.19171 1.83283 1.53863 0.92445 0.92004 0.93409 0.78298 0.94064 0.89001 0.92427 0.88060 0.89201 0.79876 0.73011 0.82779 0.84486 0.74764 0.75931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 7.93 71.98 0.57 -5.08 16 2 C 0.14 5.05 3.51 45.34 0.16 5.21 16 3 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.17 6.44 3.46 46.18 0.16 6.60 16 5 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 6 N -0.73 -36.08 4.98 -317.32 -1.58 -37.65 16 7 C -0.24 -12.99 9.97 84.04 0.84 -12.16 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 11 Si 0.97 45.42 29.55 68.60 2.03 47.44 16 12 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 C -0.14 -4.53 6.79 32.06 0.22 -4.32 16 16 C 0.10 2.53 5.14 86.93 0.45 2.97 16 17 N -0.60 -19.54 3.09 -791.49 -2.44 -21.98 16 18 C 0.60 20.15 7.65 86.65 0.66 20.82 16 19 O -0.57 -21.85 13.66 -4.06 -0.06 -21.90 16 20 C -0.25 -6.87 6.20 -18.99 -0.12 -6.99 16 21 C -0.21 -4.30 9.28 23.65 0.22 -4.08 16 22 C -0.02 -0.33 12.03 66.89 0.80 0.48 16 23 O -0.18 -3.73 10.52 4.48 0.05 -3.68 16 24 C 0.08 1.89 5.87 25.26 0.15 2.04 16 25 C -0.07 -1.31 5.64 29.10 0.16 -1.14 16 26 C 0.52 12.07 8.09 87.66 0.71 12.78 16 27 N -0.83 -11.09 8.87 -173.54 -1.54 -12.63 16 28 O -0.59 -19.83 16.87 -3.01 -0.05 -19.89 16 29 H 0.06 2.52 6.72 -2.39 -0.02 2.50 16 30 H 0.06 2.43 6.61 -2.39 -0.02 2.42 16 31 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 32 H 0.38 20.24 4.99 -92.71 -0.46 19.78 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 2.13 5.90 -2.39 -0.01 2.12 16 37 H 0.09 1.91 7.79 -2.38 -0.02 1.89 16 38 H 0.18 2.90 5.23 -2.91 -0.02 2.89 16 39 H 0.25 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.14 2.77 6.64 -2.38 -0.02 2.76 16 42 H 0.42 2.46 8.83 -92.70 -0.82 1.65 16 43 H 0.41 4.89 8.93 -92.71 -0.83 4.06 16 Total: -1.00 -81.10 353.55 1.12 -79.97 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -1.02 Total: 35.55 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.45 Total: 13.41 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.28 Total: -130.91 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.06 Total: -45.47 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.10 1.12 -79.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986757704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -81.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds