Wall clock time and date at job start Tue Mar 31 2020 12:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35527 * 116.99910 * 2 1 4 4 C 1.38816 * 120.89651 * 0.22160 * 3 2 1 5 5 C 1.38712 * 119.20424 * 180.25502 * 4 3 2 6 6 O 1.35522 * 119.47562 * 179.78749 * 5 4 3 7 7 N 1.32591 * 121.04578 * 359.76770 * 5 4 3 8 8 C 1.31605 * 121.98419 * 359.97438 * 7 5 4 9 9 C 1.39549 * 120.66532 * 359.97438 * 8 7 5 10 10 C 1.47342 * 120.55428 * 180.02562 * 9 8 7 11 11 O 1.21617 * 120.00376 * 177.71715 * 10 9 8 12 12 N 1.34781 * 119.99947 * 357.70968 * 10 9 8 13 13 C 1.47422 * 125.64662 * 174.87041 * 12 10 9 14 14 C 1.54914 * 104.83165 * 204.16901 * 13 12 10 15 15 C 1.55150 * 101.58131 * 322.99504 * 14 13 12 16 16 H 1.09005 * 110.72001 * 276.96103 * 15 14 13 17 17 N 1.46498 * 110.72084 * 153.86805 * 15 14 13 18 18 C 1.36934 * 120.00642 * 86.45104 * 17 15 14 19 19 H 1.08007 * 119.99361 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00559 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47283 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47156 * 59.99616 * 22 20 18 25 25 H 1.48502 * 109.47125 * 299.99458 * 22 20 18 26 26 C 1.47024 * 125.64858 * 354.92247 * 12 10 9 27 27 H 1.09003 * 109.88411 * 59.48564 * 26 12 10 28 28 C 1.52993 * 109.88038 * 298.31567 * 26 12 10 29 29 H 1.09011 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47504 * 299.99769 * 1 2 3 31 31 H 1.09002 * 109.47250 * 60.00390 * 1 2 3 32 32 H 1.08011 * 120.40050 * 0.02562 * 4 3 2 33 33 H 0.96693 * 113.99872 * 269.98046 * 6 5 4 34 34 H 1.07995 * 119.66634 * 180.02562 * 8 7 5 35 35 H 1.09004 * 110.36454 * 85.33176 * 13 12 10 36 36 H 1.08996 * 110.46634 * 323.05690 * 13 12 10 37 37 H 1.09002 * 111.00431 * 204.91884 * 14 13 12 38 38 H 1.09000 * 111.00023 * 81.07064 * 14 13 12 39 39 H 0.97002 * 119.99827 * 266.45745 * 17 15 14 40 40 H 0.96996 * 119.99967 * 0.02562 * 21 20 18 41 41 H 1.08992 * 109.47396 * 283.07604 * 28 26 12 42 42 H 1.09004 * 109.47300 * 43.08017 * 28 26 12 43 43 H 1.09007 * 109.47148 * 163.07360 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3065 2.3834 0.0046 5 6 1.9724 3.6003 -0.0009 6 8 1.2575 4.7516 -0.0009 7 7 3.2972 3.6547 -0.0059 8 6 4.0395 2.5681 -0.0054 9 6 3.4499 1.3033 0.0011 10 6 4.2834 0.0883 0.0023 11 8 3.7598 -1.0084 0.0499 12 7 5.6262 0.1922 -0.0496 13 6 6.5792 -0.9280 0.0520 14 6 7.8952 -0.2847 0.5559 15 6 7.8822 1.0759 -0.1896 16 1 8.2725 0.9650 -1.2013 17 7 8.6481 2.0807 0.5520 18 6 10.0000 2.1881 0.3631 19 1 10.5017 1.5322 -0.3331 20 6 10.7258 3.1398 1.0662 21 7 10.1143 3.9394 1.9142 22 14 12.5700 3.2867 0.8078 23 1 13.1057 4.3709 1.6696 24 1 12.8466 3.6045 -0.6161 25 1 13.2236 2.0018 1.1643 26 6 6.3832 1.4416 -0.2157 27 1 6.1542 2.1253 0.6018 28 6 6.0290 2.0903 -1.5552 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2268 2.3513 0.0087 33 1 1.0469 5.0838 -0.8842 34 1 5.1159 2.6560 -0.0091 35 1 6.7310 -1.3867 -0.9251 36 1 6.2213 -1.6692 0.7666 37 1 8.7589 -0.8820 0.2639 38 1 7.8702 -0.1387 1.6358 39 1 8.1974 2.6699 1.1770 40 1 9.1566 3.8634 2.0481 41 1 6.5391 1.5623 -2.3608 42 1 4.9514 2.0372 -1.7111 43 1 6.3440 3.1338 -1.5482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987012288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:38 Heat of formation + Delta-G solvation = -10.740677 kcal Electronic energy + Delta-G solvation = -27896.745855 eV Core-core repulsion = 23945.363989 eV Total energy + Delta-G solvation = -3951.381866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49812 -39.88366 -39.00690 -37.52393 -37.05927 -34.46467 -32.61650 -31.86251 -31.50812 -30.03899 -28.94628 -27.78013 -25.36374 -24.47416 -23.31760 -23.17449 -22.33308 -20.62838 -19.72812 -19.30263 -18.01268 -17.59179 -17.25978 -16.93943 -16.28622 -15.91083 -15.55506 -15.48883 -15.10978 -14.67631 -14.33968 -14.20799 -13.73740 -13.67670 -13.27576 -13.14919 -12.77599 -12.68132 -12.37506 -12.16564 -11.99096 -11.84941 -11.66044 -11.64563 -11.31345 -11.00271 -10.68982 -10.66691 -10.40648 -10.04820 -10.00208 -9.50776 -9.34751 -9.25186 -9.08937 -8.98768 -8.49864 -7.15957 -6.17368 -3.20433 0.36644 0.99231 2.73260 2.77057 2.98017 3.31948 3.49300 3.51936 3.60908 3.69784 4.26809 4.31604 4.51643 4.58673 4.71192 4.77828 4.80012 4.84311 4.98888 5.08333 5.11926 5.17842 5.30249 5.35346 5.38916 5.48178 5.57092 5.66706 5.70651 5.81625 6.00115 6.05033 6.09321 6.15137 6.29813 6.40018 6.52464 6.77747 6.83052 7.14822 7.59497 7.65852 7.72803 8.25353 8.67014 9.09778 9.96486 10.08881 11.30213 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.003529 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.487139 B = 7931.710716 C = 9176.945161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.272 6.272 3 C 0.236 3.764 4 C -0.297 4.297 5 C 0.367 3.633 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.162 3.838 9 C -0.237 4.237 10 C 0.583 3.417 11 O -0.527 6.527 12 N -0.605 5.605 13 C 0.110 3.890 14 C -0.155 4.155 15 C 0.186 3.814 16 H 0.071 0.929 17 N -0.726 5.726 18 C -0.337 4.337 19 H 0.067 0.933 20 C -0.039 4.039 21 N -0.939 5.939 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.295 1.295 26 C 0.099 3.901 27 H 0.090 0.910 28 C -0.175 4.175 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.150 0.850 33 H 0.405 0.595 34 H 0.215 0.785 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.368 0.632 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 -4.901 -7.271 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.180 6.180 3 C 0.180 3.820 4 C -0.319 4.319 5 C 0.190 3.810 6 O -0.288 6.288 7 N -0.249 5.249 8 C 0.005 3.995 9 C -0.244 4.244 10 C 0.372 3.628 11 O -0.405 6.405 12 N -0.339 5.339 13 C -0.012 4.012 14 C -0.197 4.197 15 C 0.074 3.926 16 H 0.089 0.911 17 N -0.368 5.368 18 C -0.467 4.467 19 H 0.085 0.915 20 C -0.238 4.238 21 N -0.583 5.583 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.005 4.005 27 H 0.107 0.893 28 C -0.233 4.233 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.264 0.736 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.202 0.798 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.410 -4.225 -6.333 19.002 hybrid contribution -2.408 -1.165 -0.717 2.769 sum -19.818 -5.390 -7.051 21.714 Atomic orbital electron populations 1.23262 0.78102 1.04770 1.01580 1.86384 1.21299 1.24683 1.85602 1.19121 0.90747 0.84820 0.87282 1.22036 1.02029 0.91668 1.16199 1.19169 0.86954 0.84908 0.89964 1.84700 1.71269 1.38752 1.34093 1.67451 1.06070 1.33198 1.18172 1.25090 1.03062 0.84929 0.86406 1.20462 0.91174 0.96144 1.16598 1.17226 0.80424 0.88042 0.77091 1.90807 1.71901 1.27465 1.50298 1.48374 1.04331 1.09497 1.71739 1.22270 0.88763 0.89175 1.01029 1.23583 0.95022 0.99252 1.01814 1.21200 0.86528 0.88822 0.96027 0.91108 1.42347 1.05797 1.39367 1.49323 1.19976 0.83916 1.18634 1.24206 0.91483 1.25784 1.06361 0.94911 0.96714 1.70897 1.10758 1.39741 1.36909 0.83248 0.74294 0.75896 0.75547 1.21036 1.22176 1.22206 1.22377 0.94586 0.86015 0.97483 0.89319 1.22649 1.01363 1.02359 0.96900 0.87489 0.92175 0.92269 0.83262 0.73593 0.76998 0.91611 0.90843 0.90199 0.90675 0.79766 0.93274 0.91193 0.92195 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.27 -3.60 8.72 -39.55 -0.34 -3.94 16 3 C 0.24 3.19 6.74 -38.36 -0.26 2.93 16 4 C -0.30 -3.29 9.02 -39.19 -0.35 -3.64 16 5 C 0.37 4.52 7.73 -17.05 -0.13 4.39 16 6 O -0.48 -4.79 13.54 -18.26 -0.25 -5.04 16 7 N -0.53 -7.64 10.36 -13.04 -0.14 -7.78 16 8 C 0.16 2.35 7.76 -17.16 -0.13 2.21 16 9 C -0.24 -3.58 5.37 -104.70 -0.56 -4.15 16 10 C 0.58 9.83 7.53 -12.55 -0.09 9.73 16 11 O -0.53 -10.17 15.58 -16.02 -0.25 -10.42 16 12 N -0.61 -9.51 3.06 -167.46 -0.51 -10.02 16 13 C 0.11 1.64 6.89 -2.53 -0.02 1.63 16 14 C -0.16 -2.56 6.77 -24.58 -0.17 -2.73 16 15 C 0.19 3.33 3.11 -66.10 -0.21 3.13 16 16 H 0.07 1.28 7.55 -51.93 -0.39 0.89 16 17 N -0.73 -16.53 5.25 -51.66 -0.27 -16.80 16 18 C -0.34 -8.79 9.98 -15.06 -0.15 -8.94 16 19 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 20 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 21 N -0.94 -27.81 13.70 55.49 0.76 -27.05 16 22 Si 1.08 24.85 29.92 -169.99 -5.09 19.76 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.10 1.54 2.45 -66.96 -0.16 1.37 16 27 H 0.09 1.42 5.60 -51.93 -0.29 1.13 16 28 C -0.17 -2.38 7.82 37.15 0.29 -2.09 16 29 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 31 H 0.06 0.34 7.72 -51.93 -0.40 -0.06 16 32 H 0.15 1.19 6.45 -52.48 -0.34 0.85 16 33 H 0.41 1.83 9.06 45.56 0.41 2.25 16 34 H 0.21 3.08 2.02 -56.75 -0.11 2.97 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.37 8.71 6.34 -40.82 -0.26 8.45 16 40 H 0.26 7.44 6.77 -40.82 -0.28 7.16 16 41 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 42 H 0.06 0.79 4.95 -51.93 -0.26 0.53 16 43 H 0.08 1.12 8.11 -51.92 -0.42 0.70 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -34.58 346.39 -6.37 -40.95 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.45 Total: 11.33 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.05 Total: 3.79 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.16 Total: -61.65 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.84 Total: -19.40 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.58 -6.37 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987012288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.207 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds