Wall clock time and date at job start Tue Mar 31 2020 12:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.87605 * 2 1 4 4 C 1.54325 * 109.88304 * 238.98623 * 2 1 3 5 5 C 1.55154 * 102.94303 * 218.39038 * 4 2 1 6 6 H 1.09008 * 111.00345 * 277.42446 * 5 4 2 7 7 N 1.46496 * 111.00463 * 153.57766 * 5 4 2 8 8 C 1.36940 * 120.00174 * 161.35219 * 7 5 4 9 9 H 1.08003 * 119.99978 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00135 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00230 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99894 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47283 * 89.99857 * 12 10 8 14 14 H 1.48507 * 109.46875 * 209.99650 * 12 10 8 15 15 H 1.48498 * 109.47042 * 329.99196 * 12 10 8 16 16 C 1.54908 * 101.58289 * 35.49976 * 5 4 2 17 17 N 1.47290 * 109.87458 * 121.13978 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.35971 * 17 2 1 19 19 O 1.21494 * 119.99990 * 0.02562 * 18 17 2 20 20 C 1.48336 * 119.99670 * 180.02562 * 18 17 2 21 21 N 1.31593 * 127.15852 * 359.68442 * 20 18 17 22 22 O 1.21568 * 111.54650 * 179.85434 * 21 20 18 23 23 C 1.32806 * 111.51562 * 0.37851 * 22 21 20 24 24 C 1.35705 * 106.70782 * 359.81829 * 23 22 21 25 25 C 1.50032 * 123.86912 * 179.80883 * 24 23 22 26 26 O 1.43634 * 107.81821 * 345.24408 * 25 24 23 27 27 C 1.42988 * 114.37319 * 50.04673 * 26 25 24 28 28 C 1.50675 * 130.82725 * 179.82300 * 23 22 21 29 29 H 1.08998 * 109.47192 * 181.01574 * 1 2 3 30 30 H 1.09005 * 109.47110 * 301.01774 * 1 2 3 31 31 H 1.09003 * 109.47228 * 61.01109 * 1 2 3 32 32 H 1.09002 * 110.72180 * 100.02274 * 4 2 1 33 33 H 1.08994 * 110.87038 * 336.82305 * 4 2 1 34 34 H 0.97000 * 120.00071 * 341.34892 * 7 5 4 35 35 H 0.96995 * 120.00143 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36632 * 81.83114 * 16 5 4 37 37 H 1.08995 * 110.36781 * 204.04351 * 16 5 4 38 38 H 1.08995 * 109.79441 * 104.86011 * 25 24 23 39 39 H 1.09003 * 109.79117 * 225.70496 * 25 24 23 40 40 H 1.08997 * 109.40496 * 169.44672 * 27 26 25 41 41 H 1.09008 * 109.33268 * 49.66031 * 27 26 25 42 42 H 1.08999 * 109.81867 * 283.64383 * 28 23 22 43 43 H 1.08999 * 109.82426 * 44.56996 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5133 -0.6946 6 1 4.1654 -0.8679 -0.6617 7 7 3.5531 -2.7174 -1.4856 8 6 4.7818 -3.3191 -1.4252 9 1 5.5551 -2.9057 -0.7947 10 6 5.0335 -4.4597 -2.1750 11 7 4.0913 -4.9633 -2.9438 12 14 6.7098 -5.2801 -2.0932 13 1 6.7123 -6.2941 -1.0082 14 1 7.0006 -5.9424 -3.3902 15 1 7.7490 -4.2562 -1.8163 16 6 2.8145 -1.8804 0.7341 17 7 2.0307 -0.7163 1.1856 18 6 1.8103 -0.3675 2.4686 19 8 1.1455 0.6166 2.7250 20 6 2.3794 -1.1852 3.5677 21 7 3.1098 -2.2737 3.4524 22 8 3.4287 -2.7146 4.5395 23 6 2.9402 -1.9740 5.5278 24 6 2.2453 -0.9617 4.9500 25 6 1.5269 0.1061 5.7212 26 8 1.4190 -0.3334 7.0843 27 6 2.6484 -0.7854 7.6577 28 6 3.0618 -2.1218 7.0223 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8808 31 1 -0.3634 0.4981 -0.8989 32 1 2.3529 -0.0431 -2.0202 33 1 1.3065 -1.4435 -1.6231 34 1 2.8587 -3.0885 -2.0520 35 1 4.2673 -5.7601 -3.4680 36 1 2.1886 -2.7725 0.7089 37 1 3.6716 -2.0377 1.3888 38 1 2.0919 1.0370 5.6767 39 1 0.5317 0.2571 5.3029 40 1 2.5194 -0.9197 8.7316 41 1 3.4256 -0.0428 7.4765 42 1 2.4014 -2.9163 7.3700 43 1 4.0929 -2.3543 7.2882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989820056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:14 Heat of formation + Delta-G solvation = -12.197709 kcal Electronic energy + Delta-G solvation = -27663.621698 eV Core-core repulsion = 23712.176650 eV Total energy + Delta-G solvation = -3951.445047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.34894 -41.34323 -39.92693 -38.91763 -36.07967 -35.36879 -34.30763 -33.36754 -32.84303 -31.54921 -30.16670 -27.77925 -26.88518 -26.19675 -25.52000 -24.97727 -22.84179 -21.89278 -21.86141 -20.17938 -19.26316 -19.12399 -18.63711 -18.08266 -17.53507 -17.18027 -16.79616 -16.49805 -16.22180 -15.92445 -15.61821 -15.41906 -14.95856 -14.73461 -14.65165 -14.44614 -14.31150 -13.90081 -13.78611 -13.53368 -13.15558 -12.92314 -12.88617 -12.83730 -12.70450 -12.30110 -12.15007 -12.12489 -12.06006 -11.78719 -11.59817 -11.55666 -11.41173 -11.01264 -10.93620 -10.31403 -9.88663 -9.11496 -7.98596 -5.29222 -0.09829 0.40584 1.46526 1.48210 1.52019 1.56613 1.80676 1.87371 2.51934 2.58321 2.77183 3.24635 3.32106 3.48764 3.56262 3.70097 3.74221 3.88605 3.93363 4.08993 4.11012 4.18914 4.21961 4.33898 4.38339 4.42590 4.43702 4.65134 4.65883 4.74095 4.78646 4.80245 4.88760 4.98147 4.98922 5.04278 5.15332 5.26543 5.31425 5.49018 5.99178 6.18611 6.22663 6.65944 6.91934 7.30109 7.99221 8.24817 9.24099 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003756 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.091342 B = 7453.723601 C = 9250.264801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.090 0.910 4 C -0.122 4.122 5 C 0.166 3.834 6 H 0.063 0.937 7 N -0.720 5.720 8 C -0.247 4.247 9 H 0.074 0.926 10 C -0.066 4.066 11 N -0.965 5.965 12 Si 0.970 3.030 13 H -0.288 1.288 14 H -0.294 1.294 15 H -0.269 1.269 16 C 0.091 3.909 17 N -0.594 5.594 18 C 0.606 3.394 19 O -0.544 6.544 20 C -0.025 4.025 21 N -0.350 5.350 22 O 0.133 5.867 23 C -0.019 4.019 24 C -0.219 4.219 25 C 0.150 3.850 26 O -0.387 6.387 27 C 0.054 3.946 28 C -0.066 4.066 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.378 0.622 35 H 0.253 0.747 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.147 0.853 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 10.477 20.779 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.161 4.161 5 C 0.055 3.945 6 H 0.081 0.919 7 N -0.360 5.360 8 C -0.378 4.378 9 H 0.092 0.908 10 C -0.259 4.259 11 N -0.615 5.615 12 Si 0.799 3.201 13 H -0.216 1.216 14 H -0.220 1.220 15 H -0.194 1.194 16 C -0.035 4.035 17 N -0.327 5.327 18 C 0.393 3.607 19 O -0.421 6.421 20 C -0.181 4.181 21 N -0.053 5.053 22 O 0.061 5.939 23 C -0.085 4.085 24 C -0.224 4.224 25 C 0.073 3.927 26 O -0.306 6.306 27 C -0.023 4.023 28 C -0.104 4.104 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.211 0.789 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.165 0.835 41 H 0.087 0.913 42 H 0.140 0.860 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.048 10.334 19.978 22.853 hybrid contribution 0.510 -0.687 -0.418 0.952 sum -3.538 9.647 19.560 22.094 Atomic orbital electron populations 1.22074 0.93447 1.02033 1.03526 1.21816 0.95518 0.96279 0.82840 0.89201 1.22938 0.97151 0.99595 0.96380 1.21441 0.96154 0.88291 0.88590 0.91914 1.42389 1.13122 1.29042 1.51416 1.19564 0.90956 1.06290 1.21028 0.90779 1.25514 1.01320 0.99387 0.99707 1.69798 1.34322 1.24611 1.32723 0.85203 0.79958 0.78481 0.76496 1.21550 1.21999 1.19406 1.23249 0.94419 0.86872 0.98923 1.48576 1.50838 1.28590 1.04672 1.16627 0.80125 0.83394 0.80580 1.90714 1.40968 1.27217 1.83236 1.22889 1.03253 0.96489 0.95481 1.74956 1.15030 1.11925 1.03390 1.84676 1.55074 1.44072 1.10113 1.24910 0.96483 0.91323 0.95758 1.21598 1.06248 1.03312 0.91277 1.20843 1.00613 0.91754 0.79509 1.88113 1.33557 1.83873 1.25040 1.23105 0.86359 0.92894 0.99908 1.21407 1.07156 1.02051 0.79793 0.93366 0.92401 0.88798 0.87933 0.90346 0.78860 0.93850 0.93271 0.91137 0.89764 0.87441 0.83510 0.91278 0.86025 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.10 71.98 0.66 -3.33 16 2 C 0.14 4.01 3.47 45.29 0.16 4.16 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.12 -3.76 6.10 31.78 0.19 -3.56 16 5 C 0.17 6.50 3.68 46.38 0.17 6.67 16 6 H 0.06 2.49 8.13 -2.38 -0.02 2.47 16 7 N -0.72 -35.41 5.28 -316.38 -1.67 -37.08 16 8 C -0.25 -13.47 9.98 84.03 0.84 -12.63 16 9 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 10 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 11 N -0.96 -57.91 13.06 21.65 0.28 -57.63 16 12 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 16 C 0.09 3.53 5.87 86.85 0.51 4.04 16 17 N -0.59 -20.31 3.07 -790.25 -2.43 -22.74 16 18 C 0.61 21.06 7.68 86.93 0.67 21.72 16 19 O -0.54 -19.34 15.36 -3.70 -0.06 -19.40 16 20 C -0.02 -0.80 6.99 42.46 0.30 -0.51 16 21 N -0.35 -11.91 9.37 -48.98 -0.46 -12.37 16 22 O 0.13 3.74 11.17 81.78 0.91 4.65 16 23 C -0.02 -0.42 7.50 25.09 0.19 -0.23 16 24 C -0.22 -5.70 6.15 -20.07 -0.12 -5.82 16 25 C 0.15 3.25 6.67 71.03 0.47 3.72 16 26 O -0.39 -7.00 10.76 -148.98 -1.60 -8.60 16 27 C 0.05 0.52 6.77 72.20 0.49 1.00 16 28 C -0.07 -0.68 6.56 30.06 0.20 -0.48 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.63 6.92 -2.38 -0.02 1.61 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.08 2.47 7.71 -2.39 -0.02 2.45 16 34 H 0.38 19.78 7.71 -92.71 -0.71 19.07 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.89 6.24 -2.39 -0.01 2.88 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.11 2.55 8.00 -2.39 -0.02 2.53 16 40 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.58 8.10 -2.38 -0.02 0.57 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -70.27 353.19 2.52 -67.75 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.33 Total: 26.29 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.18 Total: 11.48 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -4.27 Total: -129.82 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.75 Total: -23.35 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.27 2.52 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989820056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.553 kcal (2) G-P(sol) polarization free energy of solvation -70.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds