Wall clock time and date at job start Tue Mar 31 2020 12:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.70206 * 2 1 4 4 C 1.52760 * 109.50722 * 239.88614 * 2 1 3 5 5 H 1.08997 * 109.56572 * 65.66680 * 4 2 1 6 6 N 1.46502 * 109.35795 * 305.61279 * 4 2 1 7 7 C 1.34780 * 119.99824 * 155.16043 * 6 4 2 8 8 O 1.21613 * 119.99942 * 0.02562 * 7 6 4 9 9 C 1.47292 * 120.00055 * 180.02562 * 7 6 4 10 10 C 1.36573 * 125.80578 * 179.71702 * 9 7 6 11 11 C 1.40053 * 106.92651 * 179.88243 * 10 9 7 12 12 C 1.36569 * 106.92797 * 0.37646 * 11 10 9 13 13 C 1.47289 * 125.80800 * 179.74287 * 12 11 10 14 14 N 1.34777 * 119.99832 * 180.02562 * 13 12 11 15 15 O 1.21608 * 120.00214 * 0.02562 * 13 12 11 16 16 O 1.34549 * 125.80529 * 0.02796 * 9 7 6 17 17 C 1.53038 * 109.38194 * 185.70825 * 4 2 1 18 18 C 1.53037 * 109.54247 * 61.23488 * 17 4 2 19 19 C 1.53191 * 109.31352 * 298.63661 * 18 17 4 20 20 N 1.46923 * 108.77211 * 54.63529 * 19 18 17 21 21 C 1.36939 * 120.63411 * 126.37033 * 20 19 18 22 22 H 1.08004 * 120.00453 * 209.59918 * 21 20 19 23 23 C 1.38813 * 119.99837 * 29.59597 * 21 20 19 24 24 N 1.31622 * 120.00096 * 15.60739 * 23 21 20 25 25 Si 1.86805 * 120.00259 * 195.60590 * 23 21 20 26 26 H 1.48492 * 109.47142 * 265.65579 * 25 23 21 27 27 H 1.48508 * 109.46723 * 25.64996 * 25 23 21 28 28 H 1.48499 * 109.47280 * 145.64962 * 25 23 21 29 29 H 1.08997 * 109.46936 * 299.63843 * 1 2 3 30 30 H 1.08998 * 109.47184 * 59.64525 * 1 2 3 31 31 H 1.09004 * 109.46789 * 179.64508 * 1 2 3 32 32 H 0.96994 * 120.00193 * 335.16041 * 6 4 2 33 33 H 1.08005 * 126.53516 * 0.02584 * 10 9 7 34 34 H 1.08003 * 126.54183 * 180.11089 * 11 10 9 35 35 H 0.96998 * 120.00334 * 359.97438 * 14 13 12 36 36 H 0.97005 * 119.99948 * 180.02562 * 14 13 12 37 37 H 1.09006 * 109.45611 * 301.21591 * 17 4 2 38 38 H 1.09003 * 109.44908 * 181.25568 * 17 4 2 39 39 H 1.09000 * 109.49964 * 178.68284 * 18 17 4 40 40 H 1.09001 * 109.52366 * 58.60562 * 18 17 4 41 41 H 1.08994 * 109.58975 * 294.84514 * 19 18 17 42 42 H 1.09005 * 109.70204 * 174.48334 * 19 18 17 43 43 H 0.97002 * 120.00215 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1565 -2.1349 6 7 1.4437 -2.0590 -1.3102 7 6 1.3200 -2.6850 -2.4974 8 8 1.7040 -2.1405 -3.5148 9 6 0.7198 -4.0285 -2.5626 10 6 0.5324 -4.7658 -3.6968 11 6 -0.0617 -5.9721 -3.3055 12 6 -0.2195 -5.9164 -1.9501 13 6 -0.8116 -6.9694 -1.1074 14 7 -0.9107 -6.7902 0.2247 15 8 -1.2109 -8.0005 -1.6136 16 8 0.2574 -4.7357 -1.5154 17 6 3.5638 -0.8462 -1.1727 18 6 3.9523 -1.6686 0.0580 19 6 3.4645 -0.9519 1.3210 20 7 2.0227 -0.6996 1.1944 21 6 1.1537 -1.1135 2.1685 22 1 0.1375 -1.3731 1.9109 23 6 1.5790 -1.1997 3.4870 24 7 2.6933 -0.6060 3.8592 25 14 0.5701 -2.1581 4.7333 26 1 -0.3455 -1.2317 5.4464 27 1 -0.2253 -3.1976 4.0318 28 1 1.4790 -2.8069 5.7122 29 1 -0.3633 0.5082 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.1378 -2.4933 -0.4987 33 1 0.7948 -4.4750 -4.7033 34 1 -0.3453 -6.7889 -3.9527 35 1 -0.5919 -5.9679 0.6285 36 1 -1.3003 -7.4838 0.7797 37 1 4.0057 0.1476 -1.0996 38 1 3.9311 -1.3417 -2.0714 39 1 5.0364 -1.7761 0.0964 40 1 3.4910 -2.6543 -0.0021 41 1 3.9929 -0.0050 1.4310 42 1 3.6507 -1.5778 2.1938 43 1 2.9903 -0.6659 4.7807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993561378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:26 Heat of formation + Delta-G solvation = -58.900003 kcal Electronic energy + Delta-G solvation = -28156.189118 eV Core-core repulsion = 24202.718907 eV Total energy + Delta-G solvation = -3953.470211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.93927 -41.14481 -40.35060 -39.15318 -35.72490 -35.02002 -34.27256 -33.96961 -33.41374 -31.75444 -30.68945 -27.94519 -26.85641 -25.90510 -23.91967 -23.11583 -22.45424 -22.18503 -21.37599 -20.32363 -19.86026 -18.84181 -18.26376 -17.97297 -17.75989 -17.14325 -16.57504 -16.21488 -16.02393 -15.69928 -15.55332 -15.45990 -15.07693 -14.66786 -14.58570 -14.33179 -14.24558 -14.20108 -14.15298 -13.54297 -12.94998 -12.88074 -12.72738 -12.40317 -12.32906 -12.18932 -11.92482 -11.82370 -11.66722 -11.41679 -11.33457 -11.24490 -11.02157 -10.92396 -10.47759 -10.17956 -9.83200 -8.58929 -7.79431 -5.25671 -0.51223 0.79257 1.21222 1.51006 1.53744 1.61257 1.95040 2.02673 2.06985 2.42738 2.56200 3.37501 3.51946 3.60521 3.72829 3.85548 4.02295 4.05566 4.21602 4.36842 4.39835 4.42816 4.57365 4.67366 4.72670 4.77974 4.96118 5.00339 5.03160 5.10515 5.12602 5.22289 5.34790 5.38189 5.47088 5.53272 5.59806 5.70006 5.76804 5.82058 6.15402 6.46242 6.47882 6.98727 6.99830 7.22075 7.92008 8.45179 9.27361 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.005124 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.141934 B = 5463.641513 C = 7349.922508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.141 3.859 5 H 0.091 0.909 6 N -0.683 5.683 7 C 0.597 3.403 8 O -0.548 6.548 9 C -0.048 4.048 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.063 4.063 13 C 0.611 3.389 14 N -0.822 5.822 15 O -0.553 6.553 16 O -0.151 6.151 17 C -0.116 4.116 18 C -0.127 4.127 19 C 0.179 3.821 20 N -0.596 5.596 21 C -0.246 4.246 22 H 0.081 0.919 23 C -0.049 4.049 24 N -0.936 5.936 25 Si 0.956 3.044 26 H -0.296 1.296 27 H -0.257 1.257 28 H -0.303 1.303 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.412 0.588 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.418 0.582 36 H 0.421 0.579 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.050 0.950 41 H -0.005 1.005 42 H 0.054 0.946 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -7.746 -10.827 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.049 3.951 3 H 0.054 0.946 4 C 0.035 3.965 5 H 0.109 0.891 6 N -0.332 5.332 7 C 0.383 3.617 8 O -0.428 6.428 9 C -0.102 4.102 10 C -0.150 4.150 11 C -0.145 4.145 12 C -0.117 4.117 13 C 0.395 3.605 14 N -0.385 5.385 15 O -0.433 6.433 16 O -0.047 6.047 17 C -0.155 4.155 18 C -0.167 4.167 19 C 0.053 3.947 20 N -0.320 5.320 21 C -0.376 4.376 22 H 0.098 0.902 23 C -0.244 4.244 24 N -0.582 5.582 25 Si 0.785 3.215 26 H -0.223 1.223 27 H -0.181 1.181 28 H -0.230 1.230 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.249 0.751 33 H 0.202 0.798 34 H 0.204 0.796 35 H 0.249 0.751 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.510 -7.801 -11.477 14.591 hybrid contribution -0.182 -0.231 1.908 1.930 sum -4.692 -8.032 -9.569 13.345 Atomic orbital electron populations 1.21725 0.94211 1.01679 1.01082 1.20776 0.94559 0.93668 0.86091 0.94645 1.21447 0.93060 0.82619 0.99390 0.89086 1.45942 1.59885 1.18659 1.08689 1.16800 0.78462 0.82244 0.84184 1.90825 1.51603 1.65287 1.35122 1.22493 1.06188 0.94856 0.86665 1.22201 0.99958 0.92844 1.00003 1.22226 0.99582 0.99390 0.93296 1.22478 1.07030 0.86903 0.95268 1.16618 0.77482 0.83676 0.82693 1.43652 1.63534 1.24645 1.06685 1.90896 1.50717 1.27495 1.74155 1.84070 1.59878 1.25150 1.35614 1.21744 0.95146 1.00885 0.97723 1.21960 0.99823 0.98937 0.95936 1.20572 0.83362 0.95818 0.94922 1.44333 1.02981 1.65375 1.19345 1.19471 0.95362 1.36338 0.86411 0.90156 1.25768 0.98852 1.00968 0.98816 1.70181 1.25690 1.45870 1.16456 0.85440 0.77858 0.78962 0.79251 1.22337 1.18133 1.22995 0.93322 0.91537 0.92643 0.75090 0.79848 0.79590 0.75095 0.74488 0.90954 0.92144 0.91960 0.93100 0.98647 0.92751 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 7.72 71.98 0.56 -3.60 16 2 C 0.16 5.55 3.18 44.83 0.14 5.69 16 3 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.14 4.39 2.32 44.92 0.10 4.49 16 5 H 0.09 2.73 7.58 -2.39 -0.02 2.71 16 6 N -0.68 -20.37 3.44 -446.25 -1.54 -21.91 16 7 C 0.60 17.60 7.77 86.62 0.67 18.27 16 8 O -0.55 -18.29 16.53 -4.07 -0.07 -18.35 16 9 C -0.05 -1.23 7.14 24.26 0.17 -1.06 16 10 C -0.13 -2.82 10.60 22.32 0.24 -2.58 16 11 C -0.12 -2.56 10.60 22.32 0.24 -2.32 16 12 C -0.06 -1.43 7.14 24.26 0.17 -1.26 16 13 C 0.61 13.71 8.08 86.62 0.70 14.41 16 14 N -0.82 -13.30 8.87 -175.99 -1.56 -14.86 16 15 O -0.55 -15.38 17.70 -4.06 -0.07 -15.45 16 16 O -0.15 -3.71 10.14 -7.37 -0.07 -3.78 16 17 C -0.12 -3.64 5.58 30.62 0.17 -3.47 16 18 C -0.13 -4.44 5.93 30.67 0.18 -4.26 16 19 C 0.18 7.84 5.29 86.36 0.46 8.30 16 20 N -0.60 -25.72 2.65 -676.03 -1.79 -27.51 16 21 C -0.25 -11.57 8.58 84.03 0.72 -10.85 16 22 H 0.08 3.57 6.22 -2.91 -0.02 3.55 16 23 C -0.05 -2.46 4.94 84.86 0.42 -2.05 16 24 N -0.94 -51.77 11.22 21.65 0.24 -51.52 16 25 Si 0.96 40.80 29.58 68.60 2.03 42.83 16 26 H -0.30 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 28 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 29 H 0.05 1.72 7.62 -2.39 -0.02 1.70 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.74 6.36 -2.38 -0.02 1.73 16 32 H 0.41 12.84 7.50 -92.71 -0.70 12.14 16 33 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.42 6.15 8.59 -92.71 -0.80 5.35 16 36 H 0.42 5.15 8.93 -92.70 -0.83 4.32 16 37 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.79 7.53 -2.39 -0.02 1.77 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.05 2.74 6.12 -2.38 -0.01 2.73 16 43 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -62.06 356.04 0.88 -61.18 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -1.23 Total: 29.65 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 4.94 Total: 19.72 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.65 Total: -115.81 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.21 Total: -37.59 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -62.06 0.88 -61.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993561378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.284 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds