Wall clock time and date at job start Tue Mar 31 2020 12:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.58356 * 2 1 4 4 C 1.53186 * 109.58922 * 120.42485 * 2 1 3 5 5 H 1.08996 * 109.50465 * 294.37931 * 4 2 1 6 6 N 1.46504 * 109.49575 * 54.44261 * 4 2 1 7 7 C 1.34780 * 119.99887 * 204.99493 * 6 4 2 8 8 O 1.21614 * 120.00156 * 0.02562 * 7 6 4 9 9 C 1.47294 * 119.99743 * 179.97438 * 7 6 4 10 10 C 1.36572 * 125.80338 * 179.72023 * 9 7 6 11 11 C 1.40060 * 106.92408 * 179.85471 * 10 9 7 12 12 C 1.36574 * 106.92735 * 0.40731 * 11 10 9 13 13 C 1.47291 * 125.80760 * 179.77102 * 12 11 10 14 14 N 1.34770 * 120.00189 * 180.02562 * 13 12 11 15 15 O 1.21612 * 119.99660 * 359.97438 * 13 12 11 16 16 O 1.34546 * 125.80666 * 0.03222 * 9 7 6 17 17 C 1.53043 * 109.31506 * 174.42170 * 4 2 1 18 18 C 1.53040 * 109.53944 * 298.64197 * 17 4 2 19 19 C 1.52761 * 109.38535 * 61.23247 * 18 17 4 20 20 N 1.46920 * 109.00989 * 305.59454 * 19 18 17 21 21 C 1.36939 * 120.62777 * 233.58371 * 20 19 18 22 22 H 1.08001 * 119.99861 * 150.68269 * 21 20 19 23 23 C 1.38810 * 120.00245 * 330.67448 * 21 20 19 24 24 N 1.31624 * 120.00066 * 336.10807 * 23 21 20 25 25 Si 1.86799 * 120.00287 * 156.10046 * 23 21 20 26 26 H 1.48500 * 109.47160 * 180.02562 * 25 23 21 27 27 H 1.48495 * 109.47008 * 60.00302 * 25 23 21 28 28 H 1.48501 * 109.47032 * 300.00442 * 25 23 21 29 29 H 1.09003 * 109.47134 * 180.28488 * 1 2 3 30 30 H 1.09005 * 109.46927 * 300.28092 * 1 2 3 31 31 H 1.08997 * 109.47569 * 60.28102 * 1 2 3 32 32 H 0.97000 * 119.99885 * 24.99679 * 6 4 2 33 33 H 1.07991 * 126.53581 * 359.97050 * 10 9 7 34 34 H 1.07998 * 126.53756 * 180.16145 * 11 10 9 35 35 H 0.97003 * 119.99695 * 359.97438 * 14 13 12 36 36 H 0.97000 * 120.00107 * 180.02562 * 14 13 12 37 37 H 1.09003 * 109.45518 * 58.66063 * 17 4 2 38 38 H 1.09000 * 109.46476 * 178.61443 * 17 4 2 39 39 H 1.08997 * 109.50082 * 181.31425 * 18 17 4 40 40 H 1.09000 * 109.49366 * 301.40801 * 18 17 4 41 41 H 1.08995 * 109.51506 * 185.70680 * 19 18 17 42 42 H 1.09006 * 109.42680 * 65.42574 * 19 18 17 43 43 H 0.97002 * 119.99598 * 354.29859 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7308 1.2445 5 1 1.7661 -0.1695 2.1366 6 7 1.4509 -2.0693 1.3049 7 6 1.3280 -2.6990 2.4902 8 8 1.7088 -2.1560 3.5096 9 6 0.7316 -4.0444 2.5510 10 6 0.5554 -4.7899 3.6816 11 6 -0.0445 -5.9926 3.2876 12 6 -0.2005 -5.9338 1.9321 13 6 -0.7879 -6.9865 1.0858 14 7 -0.8847 -6.8046 -0.2461 15 8 -1.1847 -8.0202 1.5888 16 8 0.2732 -4.7504 1.5013 17 6 3.5676 -0.8494 1.1690 18 6 3.9570 -1.6654 -0.0657 19 6 3.4644 -0.9501 -1.3223 20 7 2.0226 -0.6979 -1.1954 21 6 1.1536 -1.1107 -2.1699 22 1 0.1362 -1.3662 -1.9133 23 6 1.5805 -1.2007 -3.4877 24 7 2.6036 -0.4817 -3.8986 25 14 0.7031 -2.3422 -4.6779 26 1 1.3479 -2.2559 -6.0128 27 1 -0.7222 -1.9406 -4.7892 28 1 0.7865 -3.7379 -4.1776 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8924 32 1 1.1469 -2.5022 0.4918 33 1 0.8252 -4.5054 4.6878 34 1 -0.3261 -6.8121 3.9322 35 1 -0.5679 -5.9802 -0.6473 36 1 -1.2719 -7.4977 -0.8034 37 1 4.0061 0.1461 1.0995 38 1 3.9379 -1.3473 2.0651 39 1 5.0413 -1.7693 -0.1060 40 1 3.4984 -2.6527 -0.0086 41 1 3.6503 -1.5768 -2.1945 42 1 3.9928 -0.0029 -1.4310 43 1 3.0070 0.1712 -3.3054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993561381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:29 Heat of formation + Delta-G solvation = -41.580948 kcal Electronic energy + Delta-G solvation = -28202.165393 eV Core-core repulsion = 24249.446193 eV Total energy + Delta-G solvation = -3952.719200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.98296 -39.91208 -39.37446 -37.85059 -34.43331 -34.12103 -33.24094 -32.66087 -31.95745 -30.45544 -29.20409 -26.53360 -25.15445 -24.73543 -22.63290 -21.80029 -21.27508 -21.00313 -20.33457 -18.94339 -18.84395 -17.83426 -17.14845 -17.08626 -16.77627 -15.66124 -15.06839 -14.94189 -14.73824 -14.56517 -14.42073 -14.03637 -13.68128 -13.43526 -13.39545 -13.30031 -13.24282 -13.18507 -12.76326 -11.93771 -11.60377 -11.35349 -11.12719 -10.94053 -10.82640 -10.74291 -10.34150 -10.32667 -10.25276 -10.17144 -10.10562 -10.06880 -9.89336 -9.25572 -9.06995 -8.74789 -8.48075 -7.00220 -6.15327 -3.37014 0.47725 1.74581 2.19595 2.87636 3.09646 3.14871 3.37880 3.39246 3.39730 3.59544 4.45937 4.50061 4.62168 4.81278 5.03255 5.19132 5.28720 5.34022 5.38391 5.44349 5.50608 5.59639 5.71985 5.90881 5.98325 6.03337 6.06349 6.22832 6.28914 6.29787 6.37674 6.43392 6.48900 6.53238 6.68146 6.75715 6.86658 6.98680 7.00276 7.10818 7.67132 7.81173 7.89213 8.18665 8.46966 8.98817 9.73020 10.16969 11.11667 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.005168 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.678180 B = 5416.194959 C = 7308.751783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 H 0.041 0.959 4 C 0.132 3.868 5 H 0.082 0.918 6 N -0.683 5.683 7 C 0.592 3.408 8 O -0.526 6.526 9 C -0.026 4.026 10 C -0.144 4.144 11 C -0.128 4.128 12 C -0.057 4.057 13 C 0.611 3.389 14 N -0.838 5.838 15 O -0.523 6.523 16 O -0.148 6.148 17 C -0.122 4.122 18 C -0.136 4.136 19 C 0.150 3.850 20 N -0.593 5.593 21 C -0.354 4.354 22 H 0.062 0.938 23 C -0.020 4.020 24 N -0.913 5.913 25 Si 1.062 2.938 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.413 0.587 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 -6.994 9.728 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.059 0.941 4 C 0.026 3.974 5 H 0.100 0.900 6 N -0.334 5.334 7 C 0.376 3.624 8 O -0.405 6.405 9 C -0.080 4.080 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.112 4.112 13 C 0.395 3.605 14 N -0.402 5.402 15 O -0.401 6.401 16 O -0.043 6.043 17 C -0.161 4.161 18 C -0.175 4.175 19 C 0.025 3.975 20 N -0.318 5.318 21 C -0.482 4.482 22 H 0.080 0.920 23 C -0.223 4.223 24 N -0.553 5.553 25 Si 0.892 3.108 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.252 0.748 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.243 0.757 36 H 0.243 0.757 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.518 -7.660 8.972 12.311 hybrid contribution -0.119 0.521 0.887 1.036 sum -3.637 -7.139 9.859 12.704 Atomic orbital electron populations 1.21772 0.95288 1.01537 1.00583 1.20715 0.93700 0.93738 0.86504 0.94148 1.21675 0.93065 0.82327 1.00358 0.90002 1.45984 1.59985 1.18688 1.08696 1.16727 0.78994 0.81878 0.84776 1.90840 1.50619 1.64640 1.34403 1.22719 1.04483 0.94953 0.85877 1.21944 1.01455 0.93213 0.99818 1.21954 1.00290 0.99248 0.93388 1.22282 1.07171 0.87052 0.94653 1.16613 0.77646 0.84191 0.82034 1.43737 1.64847 1.24093 1.07473 1.90908 1.49208 1.26289 1.73692 1.84097 1.59805 1.24789 1.35597 1.21789 0.95167 1.00731 0.98380 1.21960 0.99266 0.99604 0.96680 1.20890 0.84182 0.96883 0.95576 1.44233 1.02698 1.65307 1.19578 1.19913 0.95917 1.44141 0.88260 0.92049 1.25821 1.00000 1.00781 0.95716 1.70774 1.25461 1.20988 1.38029 0.83561 0.75063 0.75770 0.76409 1.21176 1.22032 1.22098 0.92776 0.94120 0.91623 0.74752 0.81413 0.81475 0.75731 0.75700 0.91527 0.92652 0.93001 0.92560 0.90284 0.96475 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.73 37.16 0.29 -2.03 16 2 C 0.16 2.95 3.20 -67.61 -0.22 2.74 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.13 2.17 2.33 -67.81 -0.16 2.01 16 5 H 0.08 1.33 7.57 -51.93 -0.39 0.94 16 6 N -0.68 -10.88 3.45 -54.81 -0.19 -11.07 16 7 C 0.59 9.33 7.78 -12.58 -0.10 9.23 16 8 O -0.53 -9.33 16.52 5.27 0.09 -9.25 16 9 C -0.03 -0.36 7.14 -36.50 -0.26 -0.62 16 10 C -0.14 -1.75 10.60 -39.50 -0.42 -2.17 16 11 C -0.13 -1.48 10.60 -39.50 -0.42 -1.90 16 12 C -0.06 -0.72 7.14 -36.50 -0.26 -0.98 16 13 C 0.61 7.40 8.08 -12.58 -0.10 7.30 16 14 N -0.84 -7.59 8.87 30.40 0.27 -7.32 16 15 O -0.52 -7.67 17.70 5.27 0.09 -7.58 16 16 O -0.15 -1.96 10.14 4.37 0.04 -1.91 16 17 C -0.12 -1.98 5.58 -26.69 -0.15 -2.13 16 18 C -0.14 -2.38 5.91 -26.83 -0.16 -2.54 16 19 C 0.15 3.17 4.66 -3.94 -0.02 3.15 16 20 N -0.59 -12.76 2.50 -165.04 -0.41 -13.17 16 21 C -0.35 -8.48 8.50 -15.06 -0.13 -8.61 16 22 H 0.06 1.45 6.27 -52.49 -0.33 1.12 16 23 C -0.02 -0.52 4.70 -17.43 -0.08 -0.60 16 24 N -0.91 -25.34 12.45 55.49 0.69 -24.65 16 25 Si 1.06 22.96 29.98 -169.99 -5.10 17.86 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.05 0.93 6.39 -51.93 -0.33 0.60 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 32 H 0.41 6.90 7.53 -40.82 -0.31 6.59 16 33 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.41 3.47 8.59 -40.82 -0.35 3.12 16 36 H 0.41 2.90 8.93 -40.82 -0.36 2.54 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 41 H 0.08 1.90 6.39 -51.93 -0.33 1.56 16 42 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 43 H 0.27 7.58 6.68 -40.82 -0.27 7.31 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -29.50 355.05 -6.97 -36.47 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.63 Total: 12.40 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.18 Total: 2.86 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.36 Total: -56.21 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.22 Total: -18.74 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.10 Total: 17.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.50 -6.97 -36.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993561381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.107 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds