Wall clock time and date at job start Tue Mar 31 2020 12:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.70503 * 2 1 4 4 C 1.53200 * 109.58756 * 120.35808 * 2 1 3 5 5 H 1.08997 * 109.52336 * 54.45188 * 4 2 1 6 6 N 1.46501 * 109.49669 * 294.37305 * 4 2 1 7 7 C 1.34767 * 119.99825 * 155.16283 * 6 4 2 8 8 O 1.21617 * 120.00396 * 359.97438 * 7 6 4 9 9 C 1.47299 * 119.99921 * 180.02562 * 7 6 4 10 10 C 1.36568 * 125.80357 * 179.97438 * 9 7 6 11 11 C 1.40061 * 106.92257 * 180.28219 * 10 9 7 12 12 C 1.36572 * 106.92599 * 359.57253 * 11 10 9 13 13 C 1.47294 * 125.80681 * 180.13329 * 12 11 10 14 14 N 1.34768 * 120.00158 * 180.32058 * 13 12 11 15 15 O 1.21616 * 119.99970 * 0.32474 * 13 12 11 16 16 O 1.34545 * 108.38844 * 0.43412 * 12 11 10 17 17 C 1.53036 * 109.31307 * 174.41883 * 4 2 1 18 18 C 1.53040 * 109.53935 * 298.63816 * 17 4 2 19 19 C 1.53192 * 109.31580 * 61.36489 * 18 17 4 20 20 N 1.46923 * 108.77076 * 305.36521 * 19 18 17 21 21 C 1.36939 * 120.62891 * 233.60686 * 20 19 18 22 22 H 1.07998 * 120.00132 * 151.57734 * 21 20 19 23 23 C 1.38811 * 120.00146 * 331.57501 * 21 20 19 24 24 N 1.31621 * 120.00281 * 160.51887 * 23 21 20 25 25 Si 1.86806 * 119.99970 * 340.52074 * 23 21 20 26 26 H 1.48498 * 109.47225 * 94.85940 * 25 23 21 27 27 H 1.48497 * 109.47292 * 214.86038 * 25 23 21 28 28 H 1.48504 * 109.46846 * 334.86120 * 25 23 21 29 29 H 1.09000 * 109.46802 * 299.63995 * 1 2 3 30 30 H 1.08993 * 109.47096 * 59.64138 * 1 2 3 31 31 H 1.09002 * 109.47350 * 179.64297 * 1 2 3 32 32 H 0.97003 * 119.99614 * 335.15919 * 6 4 2 33 33 H 1.08001 * 126.54059 * 0.02562 * 10 9 7 34 34 H 1.08002 * 126.53997 * 179.73694 * 11 10 9 35 35 H 0.97006 * 119.99870 * 0.02562 * 14 13 12 36 36 H 0.97001 * 120.00112 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.45813 * 58.65759 * 17 4 2 38 38 H 1.09003 * 109.45977 * 178.61208 * 17 4 2 39 39 H 1.08999 * 109.49559 * 181.31820 * 18 17 4 40 40 H 1.09003 * 109.49805 * 301.41022 * 18 17 4 41 41 H 1.08998 * 109.58468 * 65.15501 * 19 18 17 42 42 H 1.09002 * 109.58907 * 185.58000 * 19 18 17 43 43 H 0.97001 * 119.99985 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.6030 -1.7253 1.2919 6 7 1.6706 0.0266 2.4436 7 6 1.5505 -0.6044 3.6283 8 8 1.7513 -1.8016 3.7028 9 6 1.1749 0.1556 4.8328 10 6 1.0198 -0.3610 6.0875 11 6 0.6556 0.7017 6.9239 12 6 0.6134 1.8235 6.1460 13 6 0.2760 3.1806 6.6084 14 7 0.2637 4.2066 5.7346 15 8 0.0086 3.3754 7.7787 16 8 0.9259 1.4769 4.8840 17 6 3.5675 -0.8481 1.1701 18 6 3.9568 -1.6658 -0.0636 19 6 3.4650 -0.9469 -1.3238 20 7 2.0225 -0.6996 -1.1945 21 6 1.1536 -1.1131 -2.1688 22 1 0.1333 -1.3584 -1.9137 23 6 1.5843 -1.2168 -3.4843 24 7 0.9109 -1.9552 -4.3409 25 14 3.1196 -0.3086 -4.0389 26 1 4.2906 -1.2178 -3.9534 27 1 2.9466 0.1450 -5.4423 28 1 3.3421 0.8689 -3.1619 29 1 -0.3633 0.5082 0.8932 30 1 -0.3633 0.5194 -0.8867 31 1 -0.3634 -1.0276 -0.0064 32 1 1.5101 0.9814 2.3841 33 1 1.1488 -1.3931 6.3784 34 1 0.4502 0.6455 7.9827 35 1 0.4767 4.0513 4.8011 36 1 0.0419 5.1005 6.0392 37 1 4.0061 0.1472 1.0993 38 1 3.9378 -1.3450 2.0669 39 1 5.0411 -1.7697 -0.1038 40 1 3.4982 -2.6529 -0.0054 41 1 3.9904 0.0020 -1.4317 42 1 3.6517 -1.5717 -2.1973 43 1 1.2116 -2.0274 -5.2603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993561385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:33 Heat of formation + Delta-G solvation = -33.283597 kcal Electronic energy + Delta-G solvation = -27293.812004 eV Core-core repulsion = 23341.452604 eV Total energy + Delta-G solvation = -3952.359400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.17982 -39.99174 -39.56016 -37.99483 -34.76226 -34.36154 -33.40591 -32.85477 -31.87355 -30.86509 -29.74336 -26.64957 -25.25564 -24.78109 -23.01496 -22.03714 -21.31013 -20.92754 -20.42356 -19.89777 -18.94844 -17.92694 -17.30753 -16.98258 -16.62574 -16.04348 -15.37497 -15.15849 -15.05019 -14.61348 -14.54969 -14.37325 -13.70407 -13.60614 -13.59168 -13.46127 -13.40744 -13.30605 -12.49999 -12.06668 -11.91595 -11.45300 -11.39444 -11.06510 -10.98166 -10.76183 -10.57312 -10.50685 -10.44773 -10.36344 -10.31048 -10.00424 -9.64941 -9.51128 -9.24004 -8.94545 -8.68485 -7.05711 -5.99359 -3.38597 0.27763 1.57258 1.97124 2.67421 2.85241 2.96899 3.12104 3.28373 3.44119 3.45890 4.25120 4.44526 4.47792 4.58651 4.83416 5.08617 5.11491 5.19797 5.24830 5.35971 5.43664 5.46029 5.62021 5.77236 5.81900 5.91981 6.06607 6.08758 6.13577 6.20605 6.25041 6.29610 6.36637 6.39391 6.44593 6.62563 6.70430 6.74997 6.87061 6.95021 7.37722 7.58529 7.87838 7.97200 8.28963 8.86274 9.65914 10.00725 11.15808 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.002940 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.989067 B = 9521.119163 C = 9974.404012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.034 0.966 4 C 0.127 3.873 5 H 0.096 0.904 6 N -0.703 5.703 7 C 0.597 3.403 8 O -0.510 6.510 9 C -0.027 4.027 10 C -0.140 4.140 11 C -0.125 4.125 12 C -0.060 4.060 13 C 0.611 3.389 14 N -0.840 5.840 15 O -0.519 6.519 16 O -0.153 6.153 17 C -0.119 4.119 18 C -0.132 4.132 19 C 0.123 3.877 20 N -0.596 5.596 21 C -0.263 4.263 22 H 0.093 0.907 23 C 0.027 3.973 24 N -0.907 5.907 25 Si 0.882 3.118 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.410 0.590 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.074 0.926 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 9.941 18.834 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.052 0.948 4 C 0.022 3.978 5 H 0.114 0.886 6 N -0.352 5.352 7 C 0.380 3.620 8 O -0.387 6.387 9 C -0.082 4.082 10 C -0.160 4.160 11 C -0.145 4.145 12 C -0.114 4.114 13 C 0.395 3.605 14 N -0.404 5.404 15 O -0.396 6.396 16 O -0.049 6.049 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.002 4.002 20 N -0.320 5.320 21 C -0.391 4.391 22 H 0.110 0.890 23 C -0.173 4.173 24 N -0.549 5.549 25 Si 0.712 3.288 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.195 1.195 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.188 0.812 34 H 0.186 0.814 35 H 0.239 0.761 36 H 0.243 0.757 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.522 9.178 19.169 21.307 hybrid contribution 0.882 1.125 -0.702 1.593 sum 2.404 10.303 18.466 21.282 Atomic orbital electron populations 1.21843 0.94728 1.02467 1.00538 1.20561 0.94018 0.93357 0.85638 0.94849 1.21932 0.95317 0.97293 0.83261 0.88637 1.46046 1.68613 1.12631 1.07916 1.16666 0.78093 0.86101 0.81092 1.90901 1.50659 1.12853 1.84256 1.22722 1.07298 0.80752 0.97408 1.22007 1.01694 1.01544 0.90784 1.22000 1.00624 0.90234 1.01669 1.22241 1.10285 0.96145 0.82679 1.16613 0.76693 0.81871 0.85300 1.43698 1.72460 1.11161 1.13064 1.90929 1.49179 1.83040 1.16452 1.84025 1.66713 1.24704 1.29472 1.21789 0.95186 1.00288 0.98539 1.22005 0.99707 1.00074 0.95421 1.21419 0.84995 0.97235 0.96594 1.44339 1.02198 1.65824 1.19688 1.18911 0.95511 1.38917 0.85786 0.88956 1.25275 0.97608 0.98600 0.95773 1.69819 1.41214 1.38960 1.04947 0.86961 0.83460 0.81253 0.77093 1.21646 1.23218 1.19472 0.94098 0.91316 0.92058 0.76350 0.81219 0.81365 0.76103 0.75679 0.92412 0.92358 0.92333 0.91347 0.95477 0.90776 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.83 37.16 0.29 -2.05 16 2 C 0.17 3.04 3.03 -67.60 -0.21 2.83 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.01 1.99 -67.81 -0.14 1.87 16 5 H 0.10 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.70 -8.90 4.57 -54.81 -0.25 -9.15 16 7 C 0.60 8.08 7.77 -12.58 -0.10 7.98 16 8 O -0.51 -8.57 16.53 5.26 0.09 -8.48 16 9 C -0.03 -0.31 7.14 -36.50 -0.26 -0.57 16 10 C -0.14 -1.42 10.60 -39.50 -0.42 -1.84 16 11 C -0.12 -1.17 10.60 -39.50 -0.42 -1.59 16 12 C -0.06 -0.57 7.14 -36.50 -0.26 -0.83 16 13 C 0.61 5.61 8.08 -12.58 -0.10 5.51 16 14 N -0.84 -4.50 8.87 30.40 0.27 -4.23 16 15 O -0.52 -6.38 17.70 5.26 0.09 -6.29 16 16 O -0.15 -1.47 10.14 4.37 0.04 -1.43 16 17 C -0.12 -1.84 5.46 -26.69 -0.15 -1.98 16 18 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 19 C 0.12 2.53 4.19 -3.71 -0.02 2.52 16 20 N -0.60 -13.17 2.76 -164.78 -0.45 -13.62 16 21 C -0.26 -6.90 9.07 -15.06 -0.14 -7.03 16 22 H 0.09 2.56 6.36 -52.49 -0.33 2.23 16 23 C 0.03 0.74 5.24 -17.43 -0.09 0.65 16 24 N -0.91 -26.97 13.97 55.49 0.78 -26.19 16 25 Si 0.88 21.51 24.35 -169.99 -4.14 17.38 16 26 H -0.29 -6.86 6.72 56.52 0.38 -6.48 16 27 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.27 -6.38 6.44 56.52 0.36 -6.01 16 29 H 0.04 0.55 7.78 -51.93 -0.40 0.15 16 30 H 0.07 1.26 7.65 -51.93 -0.40 0.86 16 31 H 0.06 1.14 7.41 -51.93 -0.38 0.76 16 32 H 0.40 4.09 8.36 -40.82 -0.34 3.75 16 33 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.41 1.48 8.59 -40.82 -0.35 1.13 16 36 H 0.41 1.50 8.93 -40.82 -0.36 1.14 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.55 6.95 -51.93 -0.36 0.19 16 42 H 0.07 1.69 4.61 -51.93 -0.24 1.45 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -32.82 352.73 -6.14 -38.97 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.72 Total: 4.71 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.16 Total: 3.03 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.34 Total: -53.19 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.22 Total: -16.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.82 -6.14 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993561385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.683 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds