Wall clock time and date at job start Tue Mar 31 2020 12:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46498 * 109.38487 * 305.62932 * 4 2 1 7 7 C 1.34778 * 120.00257 * 155.14378 * 6 4 2 8 8 O 1.21679 * 119.99874 * 0.02562 * 7 6 4 9 9 C 1.46773 * 119.99988 * 180.02562 * 7 6 4 10 10 C 1.36065 * 125.64975 * 180.02562 * 9 7 6 11 11 C 1.41733 * 106.62044 * 179.97438 * 10 9 7 12 12 C 1.47488 * 126.77078 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99929 * 180.02562 * 12 11 10 14 14 O 1.21600 * 120.00057 * 359.97438 * 12 11 10 15 15 C 1.37805 * 106.45329 * 0.02562 * 11 10 9 16 16 O 1.33495 * 108.34384 * 359.76978 * 15 11 10 17 17 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 18 18 C 1.53043 * 109.54140 * 61.23858 * 17 4 2 19 19 C 1.53193 * 109.30963 * 298.63474 * 18 17 4 20 20 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 21 21 C 1.36942 * 120.62997 * 353.41990 * 20 2 1 22 22 H 1.07996 * 119.99319 * 29.57864 * 21 20 2 23 23 C 1.38810 * 120.00133 * 209.57896 * 21 20 2 24 24 N 1.31624 * 120.00100 * 15.53431 * 23 21 20 25 25 Si 1.86793 * 119.99873 * 195.53048 * 23 21 20 26 26 H 1.48502 * 109.47168 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47257 * 299.99868 * 25 23 21 28 28 H 1.48501 * 109.47449 * 60.00426 * 25 23 21 29 29 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 30 30 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 31 31 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 32 32 H 0.97004 * 119.99820 * 335.14409 * 6 4 2 33 33 H 1.07996 * 126.69026 * 359.95994 * 10 9 7 34 34 H 0.96999 * 120.00431 * 359.97438 * 13 12 11 35 35 H 0.97003 * 120.00102 * 180.02562 * 13 12 11 36 36 H 1.08004 * 125.82842 * 179.97438 * 15 11 10 37 37 H 1.09001 * 109.46284 * 301.21051 * 17 4 2 38 38 H 1.09005 * 109.44845 * 181.25310 * 17 4 2 39 39 H 1.08996 * 109.49796 * 178.68040 * 18 17 4 40 40 H 1.09000 * 109.52406 * 58.60257 * 18 17 4 41 41 H 1.08998 * 109.58588 * 294.84653 * 19 18 17 42 42 H 1.08997 * 109.70252 * 174.49039 * 19 18 17 43 43 H 0.96997 * 120.00116 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3111 7 6 1.3202 -2.6843 -2.4986 8 8 1.7045 -2.1390 -3.5162 9 6 0.7222 -4.0230 -2.5642 10 6 0.5426 -4.7567 -3.6960 11 6 -0.0628 -5.9748 -3.2976 12 6 -0.4515 -7.0955 -4.1741 13 7 -1.0221 -8.1968 -3.6467 14 8 -0.2581 -7.0255 -5.3725 15 6 -0.2165 -5.9053 -1.9299 16 8 0.2639 -4.7319 -1.5123 17 6 3.5638 -0.8460 -1.1726 18 6 3.9524 -1.6685 0.0581 19 6 3.4644 -0.9518 1.3211 20 7 2.0225 -0.6995 1.1944 21 6 1.1536 -1.1135 2.1685 22 1 0.1387 -1.3770 1.9102 23 6 1.5774 -1.1945 3.4879 24 7 2.6899 -0.5973 3.8596 25 14 0.5688 -2.1509 4.7358 26 1 1.2312 -2.0842 6.0632 27 1 -0.7903 -1.5600 4.8311 28 1 0.4633 -3.5682 4.3053 29 1 -0.3633 0.5083 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3634 -1.0276 -0.0064 32 1 1.1378 -2.4937 -0.4998 33 1 0.8091 -4.4673 -4.7017 34 1 -1.1767 -8.2525 -2.6908 35 1 -1.2774 -8.9341 -4.2231 36 1 -0.6485 -6.6710 -1.3026 37 1 4.0058 0.1477 -1.0996 38 1 3.9312 -1.3415 -2.0713 39 1 5.0363 -1.7760 0.0965 40 1 3.4910 -2.6543 -0.0021 41 1 3.9928 -0.0049 1.4310 42 1 3.6506 -1.5776 2.1938 43 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993790416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:45 Heat of formation + Delta-G solvation = -40.488208 kcal Electronic energy + Delta-G solvation = -27772.041011 eV Core-core repulsion = 23819.369195 eV Total energy + Delta-G solvation = -3952.671816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.98270 -39.74099 -39.36284 -37.64944 -34.23100 -34.06426 -33.12670 -32.50037 -31.80935 -30.36107 -29.18581 -26.36630 -25.08605 -24.26750 -23.70565 -21.84803 -21.09968 -20.80804 -20.02188 -18.89935 -18.80254 -17.31203 -16.67503 -16.59497 -16.43544 -16.19332 -15.45159 -14.96404 -14.86894 -14.60688 -14.41920 -13.96556 -13.79504 -13.48494 -13.26132 -13.13348 -13.06070 -12.85442 -12.61917 -11.90974 -11.33495 -11.30235 -11.01955 -10.76857 -10.69248 -10.58620 -10.50723 -10.26269 -10.18998 -10.08217 -10.07990 -10.02835 -9.72526 -9.37368 -9.03098 -8.62868 -8.51649 -6.73027 -5.86523 -3.32211 0.81090 1.40638 2.43714 3.01420 3.08176 3.30466 3.31125 3.36755 3.37928 3.49030 4.24212 4.39977 4.43071 4.78389 5.22893 5.25517 5.28050 5.36395 5.49153 5.50292 5.57717 5.68354 5.90378 5.96639 6.05758 6.16734 6.24160 6.35931 6.39965 6.46898 6.48805 6.58697 6.62451 6.72301 6.87526 6.90082 6.94758 7.00359 7.32651 7.61009 7.72582 7.81840 7.91515 8.33520 8.37356 9.12682 9.75481 10.32758 11.21652 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003831 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.831962 B = 7307.224518 C = 8551.202092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.132 3.868 5 H 0.081 0.919 6 N -0.685 5.685 7 C 0.594 3.406 8 O -0.530 6.530 9 C -0.064 4.064 10 C -0.078 4.078 11 C -0.247 4.247 12 C 0.595 3.405 13 N -0.852 5.852 14 O -0.536 6.536 15 C 0.043 3.957 16 O -0.143 6.143 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.171 3.829 20 N -0.586 5.586 21 C -0.258 4.258 22 H 0.070 0.930 23 C 0.008 3.992 24 N -0.899 5.899 25 Si 0.900 3.100 26 H -0.291 1.291 27 H -0.283 1.283 28 H -0.284 1.284 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.169 0.831 34 H 0.400 0.600 35 H 0.407 0.593 36 H 0.217 0.783 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.086 0.914 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -11.009 -8.833 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.060 0.940 4 C 0.026 3.974 5 H 0.099 0.901 6 N -0.335 5.335 7 C 0.378 3.622 8 O -0.409 6.409 9 C -0.116 4.116 10 C -0.099 4.099 11 C -0.252 4.252 12 C 0.381 3.619 13 N -0.416 5.416 14 O -0.413 6.413 15 C -0.031 4.031 16 O -0.035 6.035 17 C -0.160 4.160 18 C -0.180 4.180 19 C 0.046 3.954 20 N -0.310 5.310 21 C -0.388 4.388 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.543 5.543 25 Si 0.730 3.270 26 H -0.217 1.217 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.187 0.813 34 H 0.228 0.772 35 H 0.238 0.762 36 H 0.234 0.766 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.984 -10.196 -9.769 14.974 hybrid contribution -0.786 -1.247 1.347 1.997 sum -5.770 -11.442 -8.422 15.335 Atomic orbital electron populations 1.21799 0.95567 1.01438 1.00655 1.20637 0.93432 0.94052 0.86682 0.94025 1.21613 0.93121 0.82354 1.00293 0.90131 1.45983 1.60011 1.18922 1.08589 1.16579 0.78932 0.81893 0.84764 1.90859 1.50770 1.64605 1.34653 1.22293 1.08282 0.95793 0.85211 1.21799 0.97173 0.91116 0.99831 1.20581 1.12435 0.98508 0.93665 1.17243 0.76327 0.81397 0.86905 1.43659 1.65511 1.19790 1.12653 1.90851 1.54570 1.80810 1.15110 1.25024 0.96790 0.87266 0.94051 1.84025 1.58469 1.25226 1.35769 1.21787 0.95128 1.00726 0.98406 1.22150 0.99085 0.99497 0.97309 1.20797 0.83169 0.97219 0.94241 1.44147 1.03188 1.64829 1.18813 1.19095 0.95087 1.38389 0.86206 0.91272 1.25096 0.97762 0.99320 0.96972 1.70013 1.23882 1.43466 1.16896 0.86418 0.79665 0.80148 0.80768 1.21706 1.20894 1.21041 0.91617 0.94085 0.92851 0.74859 0.81306 0.77193 0.76206 0.76624 0.91584 0.92937 0.93308 0.92904 0.96289 0.89611 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.72 37.16 0.29 -2.11 16 2 C 0.16 3.03 3.18 -67.83 -0.22 2.82 16 3 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.13 2.27 2.32 -68.03 -0.16 2.12 16 5 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 6 N -0.69 -11.35 3.44 -55.19 -0.19 -11.54 16 7 C 0.59 9.83 7.75 -12.81 -0.10 9.73 16 8 O -0.53 -10.01 16.51 5.21 0.09 -9.92 16 9 C -0.06 -0.92 7.09 -36.91 -0.26 -1.18 16 10 C -0.08 -1.06 10.41 -39.03 -0.41 -1.47 16 11 C -0.25 -2.73 6.16 -104.95 -0.65 -3.37 16 12 C 0.60 6.48 8.09 -12.49 -0.10 6.38 16 13 N -0.85 -4.88 8.86 30.45 0.27 -4.61 16 14 O -0.54 -8.20 17.77 5.28 0.09 -8.10 16 15 C 0.04 0.37 11.64 30.57 0.36 0.72 16 16 O -0.14 -1.75 10.32 6.22 0.06 -1.69 16 17 C -0.12 -2.09 5.58 -26.69 -0.15 -2.24 16 18 C -0.14 -2.60 5.93 -26.61 -0.16 -2.76 16 19 C 0.17 3.80 5.29 -3.71 -0.02 3.78 16 20 N -0.59 -13.08 2.65 -165.03 -0.44 -13.52 16 21 C -0.26 -6.31 8.57 -15.06 -0.13 -6.44 16 22 H 0.07 1.63 6.23 -52.49 -0.33 1.31 16 23 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 24 N -0.90 -24.59 11.23 55.49 0.62 -23.96 16 25 Si 0.90 20.26 29.58 -169.99 -5.03 15.23 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 1.24 7.62 -51.93 -0.40 0.85 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.93 6.37 -51.93 -0.33 0.59 16 32 H 0.41 7.09 7.48 -40.82 -0.31 6.79 16 33 H 0.17 2.37 8.06 -52.49 -0.42 1.94 16 34 H 0.40 0.96 7.78 -40.82 -0.32 0.64 16 35 H 0.41 1.83 8.93 -40.82 -0.36 1.47 16 36 H 0.22 0.69 7.46 -52.48 -0.39 0.29 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 2.15 6.14 -51.93 -0.32 1.83 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -32.25 354.72 -6.59 -38.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.63 Total: 7.85 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.79 Total: 6.09 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.27 Total: -53.64 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.24 Total: -19.71 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.25 -6.59 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993790416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.644 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds