Wall clock time and date at job start Tue Mar 31 2020 12:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.49671 * 2 1 4 4 C 1.53196 * 109.49993 * 239.93675 * 2 1 3 5 5 N 1.46921 * 108.77652 * 185.41026 * 4 2 1 6 6 C 1.34772 * 120.63233 * 233.58546 * 5 4 2 7 7 O 1.21615 * 120.00172 * 7.38813 * 6 5 4 8 8 C 1.47291 * 120.00260 * 187.39564 * 6 5 4 9 9 C 1.36572 * 125.80876 * 187.51608 * 8 6 5 10 10 C 1.40062 * 106.92677 * 180.02562 * 9 8 6 11 11 C 1.36566 * 106.92846 * 0.02562 * 10 9 8 12 12 C 1.47286 * 125.80800 * 179.97438 * 11 10 9 13 13 N 1.34778 * 120.00039 * 179.97438 * 12 11 10 14 14 O 1.21616 * 119.99868 * 359.97438 * 12 11 10 15 15 O 1.34551 * 125.80494 * 7.54214 * 8 6 5 16 16 C 1.46927 * 118.74040 * 53.86132 * 5 4 2 17 17 C 1.53625 * 108.54065 * 306.09664 * 16 5 4 18 18 C 1.53033 * 109.50057 * 120.09723 * 2 1 3 19 19 H 1.09001 * 109.46062 * 301.33960 * 18 2 1 20 20 N 1.46507 * 109.46112 * 61.29832 * 18 2 1 21 21 C 1.36934 * 119.99997 * 205.00274 * 20 18 2 22 22 H 1.07994 * 120.00203 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99686 * 179.97438 * 21 20 18 24 24 N 1.31628 * 120.00092 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00092 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47131 * 90.00286 * 25 23 21 27 27 H 1.48503 * 109.46956 * 209.99704 * 25 23 21 28 28 H 1.48495 * 109.47359 * 329.99849 * 25 23 21 29 29 H 1.09006 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47331 * 300.05924 * 1 2 3 31 31 H 1.09006 * 109.47248 * 60.06560 * 1 2 3 32 32 H 1.09000 * 109.58786 * 65.62294 * 4 2 1 33 33 H 1.08998 * 109.58762 * 305.20052 * 4 2 1 34 34 H 1.08000 * 126.53446 * 359.76323 * 9 8 6 35 35 H 1.07999 * 126.53438 * 180.02562 * 10 9 8 36 36 H 0.96997 * 120.00041 * 0.02562 * 13 12 11 37 37 H 0.97005 * 120.00063 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.58076 * 65.92334 * 16 5 4 39 39 H 1.08991 * 109.59248 * 186.34645 * 16 5 4 40 40 H 1.09001 * 109.63011 * 294.85951 * 17 16 5 41 41 H 1.09002 * 109.42992 * 174.72700 * 17 16 5 42 42 H 0.96996 * 119.99385 * 24.99895 * 20 18 2 43 43 H 0.96998 * 120.00318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8287 -1.1699 6 6 4.2811 -0.3857 -2.1784 7 8 3.7845 0.2267 -3.1043 8 6 5.7311 -0.6433 -2.1594 9 6 6.6453 -0.1309 -3.0351 10 6 7.8978 -0.6301 -2.6557 11 6 7.6947 -1.4263 -1.5650 12 6 8.7370 -2.1622 -0.8292 13 7 8.4040 -2.9170 0.2366 14 8 9.8981 -2.0888 -1.1834 15 8 6.3804 -1.4239 -1.2765 16 6 4.1051 -1.4317 0.0279 17 6 3.5708 -0.6953 1.2657 18 6 2.0408 -0.7234 1.2481 19 1 1.6581 -0.2251 2.1388 20 7 1.5784 -2.1135 1.2301 21 6 1.4482 -2.8069 2.4037 22 1 1.6860 -2.3291 3.3425 23 6 1.0096 -4.1238 2.3867 24 7 0.8840 -4.7903 3.5148 25 14 0.5962 -4.9497 0.7630 26 1 1.8111 -5.6083 0.2192 27 1 -0.4630 -5.9675 0.9809 28 1 0.1120 -3.9300 -0.2018 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.7638 -0.1573 -2.1390 33 1 1.6053 -1.7212 -1.2986 34 1 6.4408 0.5296 -3.8648 35 1 8.8437 -0.4244 -3.1345 36 1 7.4779 -2.9759 0.5189 37 1 9.0905 -3.4020 0.7210 38 1 3.8339 -2.4861 0.0811 39 1 5.1896 -1.3332 -0.0180 40 1 3.9159 0.3386 1.2541 41 1 3.9335 -1.1902 2.1667 42 1 1.3644 -2.5425 0.3869 43 1 0.5778 -5.7106 3.5029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036101491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:54 Heat of formation + Delta-G solvation = -32.305047 kcal Electronic energy + Delta-G solvation = -28044.445892 eV Core-core repulsion = 24092.128925 eV Total energy + Delta-G solvation = -3952.316967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.15830 -40.16926 -39.44794 -38.00604 -34.73027 -34.20863 -33.35320 -32.96559 -31.64493 -30.51092 -29.85821 -26.87960 -25.69241 -24.16904 -23.26204 -22.33818 -21.80416 -21.04842 -20.41854 -18.95658 -18.33476 -17.97733 -17.38509 -17.13316 -16.91680 -16.18899 -15.32042 -15.07167 -14.82183 -14.66682 -14.47194 -14.21459 -13.78675 -13.76800 -13.49872 -13.41468 -13.28724 -13.18692 -12.66426 -12.35950 -11.82938 -11.69854 -11.48117 -11.09947 -11.05831 -10.90705 -10.74125 -10.62603 -10.40321 -10.30692 -10.19678 -10.14117 -9.98038 -9.64535 -9.12506 -9.04613 -8.55389 -7.38166 -5.87333 -3.23254 0.36738 1.64235 2.04683 2.80125 2.83867 2.96065 3.19166 3.26302 3.28867 3.37067 4.17731 4.48017 4.50258 4.60694 4.92691 5.01448 5.10610 5.18299 5.20092 5.24655 5.45855 5.47595 5.50042 5.57817 5.63867 5.76935 5.82589 5.90425 5.96503 6.12357 6.14026 6.20956 6.28460 6.34625 6.41000 6.46320 6.55841 6.65461 6.73943 6.91895 7.27879 7.73803 7.88052 7.88481 8.31537 9.09289 9.81865 10.01363 11.30904 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004446 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.263518 B = 6295.744480 C = 7643.884583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 H 0.074 0.926 4 C 0.117 3.883 5 N -0.591 5.591 6 C 0.595 3.405 7 O -0.524 6.524 8 C -0.027 4.027 9 C -0.139 4.139 10 C -0.127 4.127 11 C -0.063 4.063 12 C 0.610 3.390 13 N -0.838 5.838 14 O -0.522 6.522 15 O -0.142 6.142 16 C 0.101 3.899 17 C -0.148 4.148 18 C 0.184 3.816 19 H 0.062 0.938 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.009 3.991 24 N -0.932 5.932 25 Si 0.877 3.123 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.360 0.640 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.494 8.566 -9.226 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.092 0.908 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.381 3.619 7 O -0.402 6.402 8 C -0.081 4.081 9 C -0.159 4.159 10 C -0.147 4.147 11 C -0.117 4.117 12 C 0.394 3.606 13 N -0.402 5.402 14 O -0.399 6.399 15 O -0.039 6.039 16 C -0.021 4.021 17 C -0.189 4.189 18 C 0.074 3.926 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.187 4.187 24 N -0.579 5.579 25 Si 0.707 3.293 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.186 0.814 35 H 0.185 0.815 36 H 0.241 0.759 37 H 0.244 0.756 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.194 0.806 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.727 8.776 -9.542 16.827 hybrid contribution -0.417 -1.041 -0.739 1.343 sum 10.310 7.735 -10.281 16.487 Atomic orbital electron populations 1.21681 0.93948 1.02933 1.01081 1.21767 0.96727 0.99398 0.95296 0.90793 1.21786 0.77544 1.01535 0.99576 1.48100 1.07428 1.58636 1.17979 1.16822 0.82373 0.79719 0.82939 1.90844 1.72180 1.41334 1.35851 1.22552 0.93688 0.98652 0.93237 1.21955 0.90771 1.02254 1.00953 1.21957 0.99741 0.97212 0.95790 1.22451 0.82471 1.05741 1.01029 1.16629 0.85842 0.78256 0.79873 1.43730 1.14512 1.50274 1.31667 1.90916 1.17582 1.63944 1.67488 1.84345 1.18143 1.55147 1.46239 1.22295 0.97542 0.98749 0.83489 1.22588 0.99990 0.99028 0.97314 1.20201 0.90885 0.86212 0.95329 0.91965 1.42843 1.80591 1.09394 1.05890 1.19045 1.37799 0.94065 0.86307 0.89117 1.24631 1.01420 0.96728 0.95961 1.69687 1.52957 1.10861 1.24429 0.86692 0.78243 0.79615 0.84733 1.21157 1.21672 1.20410 0.91584 0.92174 0.93419 0.89034 0.90941 0.81376 0.81473 0.75906 0.75614 0.89758 0.89203 0.92778 0.89942 0.80635 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 37.15 0.34 -1.60 16 2 C -0.11 -1.60 2.67 -90.50 -0.24 -1.84 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.71 5.43 -3.71 -0.02 1.69 16 5 N -0.59 -8.53 2.97 -173.83 -0.52 -9.04 16 6 C 0.59 8.72 7.67 -12.58 -0.10 8.63 16 7 O -0.52 -8.73 16.30 5.26 0.09 -8.64 16 8 C -0.03 -0.35 6.78 -36.50 -0.25 -0.60 16 9 C -0.14 -1.54 10.60 -39.50 -0.42 -1.96 16 10 C -0.13 -1.33 10.60 -39.50 -0.42 -1.75 16 11 C -0.06 -0.71 7.14 -36.51 -0.26 -0.97 16 12 C 0.61 6.76 8.08 -12.58 -0.10 6.66 16 13 N -0.84 -6.65 8.87 30.40 0.27 -6.38 16 14 O -0.52 -7.25 17.70 5.26 0.09 -7.15 16 15 O -0.14 -1.67 6.99 4.34 0.03 -1.64 16 16 C 0.10 1.41 5.88 -3.48 -0.02 1.39 16 17 C -0.15 -2.17 5.79 -26.39 -0.15 -2.32 16 18 C 0.18 3.05 2.53 -67.89 -0.17 2.87 16 19 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 20 N -0.74 -15.21 3.44 -53.39 -0.18 -15.39 16 21 C -0.24 -6.12 10.41 -15.06 -0.16 -6.28 16 22 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 23 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -27.57 13.97 55.49 0.78 -26.80 16 25 Si 0.88 20.71 27.73 -169.99 -4.71 16.00 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 29 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 33 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 34 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.41 2.85 8.59 -40.82 -0.35 2.50 16 37 H 0.41 2.54 8.93 -40.82 -0.36 2.17 16 38 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 39 H 0.09 1.11 4.23 -53.07 -0.22 0.89 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.36 7.41 3.79 -40.82 -0.15 7.26 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -31.54 352.54 -6.48 -38.02 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.57 Total: 11.64 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.07 Total: 4.07 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.35 Total: -57.62 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.21 Total: -17.43 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.71 Total: 16.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.54 -6.48 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036101491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.718 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds