Wall clock time and date at job start Tue Mar 31 2020 12:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49746 * 2 1 4 4 C 1.53193 * 109.52078 * 120.07723 * 2 1 3 5 5 N 1.46933 * 108.77421 * 174.60525 * 4 2 1 6 6 C 1.34769 * 120.63097 * 126.41594 * 5 4 2 7 7 O 1.21679 * 120.00410 * 352.53971 * 6 5 4 8 8 C 1.46774 * 119.99879 * 172.54791 * 6 5 4 9 9 C 1.36063 * 125.65540 * 172.35034 * 8 6 5 10 10 C 1.41733 * 106.62599 * 179.85758 * 9 8 6 11 11 C 1.47491 * 126.77512 * 180.17660 * 10 9 8 12 12 N 1.34768 * 120.00049 * 180.29593 * 11 10 9 13 13 O 1.21602 * 119.99664 * 0.29466 * 11 10 9 14 14 C 1.37807 * 106.45118 * 0.39694 * 10 9 8 15 15 O 1.33499 * 108.34232 * 359.75808 * 14 10 9 16 16 C 1.46921 * 118.73696 * 306.38921 * 5 4 2 17 17 C 1.53196 * 108.77967 * 53.60957 * 16 5 4 18 18 C 1.53040 * 109.31184 * 305.36898 * 17 16 5 19 19 H 1.09009 * 109.45784 * 301.34354 * 18 17 16 20 20 N 1.46493 * 109.46350 * 181.38108 * 18 17 16 21 21 C 1.36938 * 120.00099 * 84.99552 * 20 18 17 22 22 H 1.08008 * 120.00002 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00311 * 180.02562 * 21 20 18 24 24 N 1.31612 * 119.99933 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99810 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46970 * 89.99939 * 25 23 21 27 27 H 1.48495 * 109.47195 * 210.00057 * 25 23 21 28 28 H 1.48500 * 109.47036 * 330.00087 * 25 23 21 29 29 H 1.08999 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47393 * 300.07147 * 1 2 3 31 31 H 1.09005 * 109.47274 * 60.07136 * 1 2 3 32 32 H 1.09000 * 109.58447 * 294.38783 * 4 2 1 33 33 H 1.08995 * 109.58903 * 54.67123 * 4 2 1 34 34 H 1.08005 * 126.68369 * 359.97438 * 9 8 6 35 35 H 0.97004 * 120.00162 * 359.97438 * 12 11 10 36 36 H 0.97003 * 120.00617 * 179.97438 * 12 11 10 37 37 H 1.08003 * 125.82731 * 179.78412 * 14 10 9 38 38 H 1.09007 * 109.59018 * 293.82400 * 16 5 4 39 39 H 1.08997 * 109.58938 * 173.39996 * 16 5 4 40 40 H 1.08993 * 109.50407 * 185.41586 * 17 16 5 41 41 H 1.09003 * 109.49120 * 65.31155 * 17 16 5 42 42 H 0.96999 * 120.00460 * 264.99661 * 20 18 17 43 43 H 0.97008 * 119.99747 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7236 1.2495 5 7 3.5052 -0.8282 1.1691 6 6 4.2817 -0.3853 2.1777 7 8 3.7850 0.2281 3.1038 8 6 5.7266 -0.6425 2.1588 9 6 6.6352 -0.1283 3.0314 10 6 7.9003 -0.6388 2.6473 11 6 9.1964 -0.3667 3.2965 12 7 10.3235 -0.9234 2.8106 13 8 9.2480 0.3599 4.2701 14 6 7.6812 -1.4355 1.5444 15 8 6.3748 -1.4231 1.2701 16 6 4.1059 -1.4255 -0.0313 17 6 3.5709 -0.6941 -1.2665 18 6 2.0408 -0.7228 -1.2485 19 1 1.6972 -1.7572 -1.2353 20 7 1.5259 -0.0529 -2.4452 21 6 1.3946 -0.7495 -3.6168 22 1 1.6702 -1.7930 -3.6585 23 6 0.9072 -0.1146 -4.7510 24 7 0.7804 -0.7844 -5.8769 25 14 0.4298 1.6899 -4.6788 26 1 1.6078 2.5275 -5.0191 27 1 -0.6616 1.9525 -5.6509 28 1 -0.0362 2.0242 -3.3090 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3634 0.5127 -0.8907 32 1 1.7643 -0.1578 2.1388 33 1 1.6043 -1.7206 1.2993 34 1 6.4316 0.5375 3.8572 35 1 10.2823 -1.5033 2.0341 36 1 11.1760 -0.7442 3.2372 37 1 8.4372 -1.9778 0.9960 38 1 3.8386 -2.4808 -0.0873 39 1 5.1901 -1.3230 0.0129 40 1 3.9334 -1.1885 -2.1677 41 1 3.9155 0.3400 -1.2546 42 1 1.2781 0.8842 -2.4078 43 1 0.4395 -0.3408 -6.6693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036194447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:06 Heat of formation + Delta-G solvation = -36.250657 kcal Electronic energy + Delta-G solvation = -27139.933929 eV Core-core repulsion = 23187.445867 eV Total energy + Delta-G solvation = -3952.488062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25401 -40.09480 -39.48319 -37.87999 -34.94720 -34.28590 -33.35815 -32.96967 -31.64824 -30.48264 -29.84728 -26.76679 -25.40168 -24.44782 -23.24157 -22.33146 -21.59317 -21.17166 -20.19511 -19.68447 -18.34886 -17.58615 -17.21940 -17.12463 -16.84216 -16.24839 -16.00169 -15.17474 -15.00104 -14.74059 -14.51675 -14.25737 -13.95352 -13.86331 -13.46504 -13.34925 -13.12588 -13.04279 -12.54055 -12.43181 -11.86194 -11.82616 -11.46959 -11.09097 -10.94547 -10.77400 -10.62038 -10.56033 -10.41793 -10.31375 -10.23528 -10.18326 -9.83499 -9.63034 -9.20824 -8.97736 -8.65197 -7.32648 -5.82693 -3.18248 0.60340 1.22408 2.16078 2.77538 2.85156 3.04842 3.11978 3.33408 3.36905 3.42245 4.03524 4.16410 4.43707 4.54169 4.83919 4.98233 5.05906 5.09032 5.13280 5.20759 5.28993 5.41621 5.54944 5.59029 5.61424 5.77807 5.82777 5.89184 6.01963 6.04976 6.17442 6.23479 6.29444 6.29945 6.38610 6.44244 6.63683 6.71015 6.83656 6.88112 7.24081 7.80492 7.88624 7.92621 8.36378 9.14540 9.87440 10.07248 11.35502 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.002915 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.128715 B = 9603.908980 C =10365.040820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.599 3.401 7 O -0.523 6.523 8 C -0.068 4.068 9 C -0.071 4.071 10 C -0.244 4.244 11 C 0.594 3.406 12 N -0.851 5.851 13 O -0.535 6.535 14 C 0.037 3.963 15 O -0.139 6.139 16 C 0.097 3.903 17 C -0.151 4.151 18 C 0.188 3.812 19 H 0.058 0.942 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.170 0.830 35 H 0.400 0.600 36 H 0.407 0.593 37 H 0.218 0.782 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.361 0.639 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.423 -4.058 15.611 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.386 3.614 7 O -0.402 6.402 8 C -0.119 4.119 9 C -0.092 4.092 10 C -0.248 4.248 11 C 0.380 3.620 12 N -0.415 5.415 13 O -0.412 6.412 14 C -0.036 4.036 15 O -0.033 6.033 16 C -0.025 4.025 17 C -0.192 4.192 18 C 0.078 3.922 19 H 0.076 0.924 20 N -0.387 5.387 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.188 0.812 35 H 0.228 0.772 36 H 0.239 0.761 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.194 0.806 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.764 -3.576 16.269 22.258 hybrid contribution 0.304 1.065 -0.496 1.214 sum 15.068 -2.510 15.773 21.958 Atomic orbital electron populations 1.21673 0.93933 1.02206 1.01725 1.21798 0.96732 1.00148 0.94764 0.91153 1.21792 0.77441 1.01331 0.99539 1.48076 1.07437 1.59407 1.17767 1.16661 0.82439 0.79439 0.82829 1.90876 1.72304 1.41064 1.35942 1.22064 0.93779 1.01579 0.94481 1.21830 0.89264 0.98854 0.99267 1.20600 0.95243 1.07493 1.01503 1.17244 0.82985 0.79078 0.82725 1.43655 1.09745 1.52791 1.35345 1.90862 1.86706 1.37119 1.26492 1.25197 0.84302 0.98137 0.95995 1.84238 1.18798 1.54550 1.45729 1.22295 0.98522 0.97620 0.84057 1.22663 0.99900 1.00483 0.96170 1.20182 0.90454 0.96098 0.85431 0.92411 1.42768 1.78034 1.10221 1.07634 1.19041 1.36506 0.95768 0.85941 0.89195 1.24657 1.01289 0.97429 0.95627 1.69694 1.52025 1.35689 1.00669 0.86590 0.78238 0.86806 0.77095 1.21178 1.21778 1.20270 0.92501 0.93457 0.91310 0.88954 0.90822 0.81230 0.77196 0.76108 0.76573 0.90895 0.88666 0.89848 0.92252 0.80589 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.03 37.16 0.34 -1.68 16 2 C -0.11 -1.71 2.46 -90.50 -0.22 -1.94 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.12 1.60 5.73 -3.71 -0.02 1.58 16 5 N -0.60 -7.93 2.97 -174.27 -0.52 -8.45 16 6 C 0.60 8.50 7.65 -12.81 -0.10 8.40 16 7 O -0.52 -8.79 16.29 5.21 0.08 -8.70 16 8 C -0.07 -0.81 6.74 -36.92 -0.25 -1.06 16 9 C -0.07 -0.83 10.42 -39.03 -0.41 -1.24 16 10 C -0.24 -2.24 6.16 -104.95 -0.65 -2.88 16 11 C 0.59 5.62 8.09 -12.49 -0.10 5.51 16 12 N -0.85 -3.77 8.86 30.45 0.27 -3.50 16 13 O -0.53 -7.51 17.77 5.28 0.09 -7.42 16 14 C 0.04 0.23 11.64 30.57 0.36 0.59 16 15 O -0.14 -1.29 7.16 6.19 0.04 -1.25 16 16 C 0.10 1.20 6.10 -3.71 -0.02 1.17 16 17 C -0.15 -2.33 5.66 -26.61 -0.15 -2.49 16 18 C 0.19 3.27 2.19 -67.89 -0.15 3.13 16 19 H 0.06 1.04 8.08 -51.92 -0.42 0.62 16 20 N -0.74 -16.36 4.21 -53.38 -0.22 -16.59 16 21 C -0.24 -6.43 10.41 -15.06 -0.16 -6.59 16 22 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -28.40 13.97 55.49 0.78 -27.63 16 25 Si 0.88 21.53 27.74 -169.99 -4.71 16.82 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.17 7.36 -51.93 -0.38 0.78 16 32 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.40 0.39 7.78 -40.82 -0.32 0.07 16 36 H 0.41 1.38 8.93 -40.82 -0.36 1.02 16 37 H 0.22 0.19 7.46 -52.48 -0.39 -0.20 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.05 4.23 -53.19 -0.23 0.83 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.36 8.00 5.37 -40.82 -0.22 7.78 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -35.67 355.11 -6.12 -41.79 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.66 Total: 6.99 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.63 Total: 2.58 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.30 Total: -56.16 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.22 Total: -17.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.67 -6.12 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036194447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.537 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds