Wall clock time and date at job start Tue Mar 31 2020 12:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.51365 * 2 1 4 4 C 1.53279 * 109.50849 * 120.09931 * 2 1 3 5 5 N 1.47164 * 108.55430 * 172.86684 * 4 2 1 6 6 C 1.34775 * 121.06774 * 128.84898 * 5 4 2 7 7 O 1.21680 * 120.00045 * 3.98774 * 6 5 4 8 8 C 1.46727 * 120.00128 * 183.97959 * 6 5 4 9 9 C 1.36336 * 126.64429 * 172.49015 * 8 6 5 10 10 N 1.33693 * 107.45332 * 180.02562 * 9 8 6 11 11 C 1.30615 * 108.99544 * 359.97438 * 10 9 8 12 12 O 1.33666 * 109.15420 * 0.02562 * 11 10 9 13 13 C 1.47310 * 117.86681 * 309.12228 * 5 4 2 14 14 C 1.52106 * 108.60873 * 49.08474 * 13 5 4 15 15 C 1.54525 * 109.89818 * 72.25691 * 14 13 5 16 16 C 1.55020 * 101.52572 * 153.09746 * 15 14 13 17 17 N 1.47483 * 104.90335 * 323.62947 * 16 15 14 18 18 C 1.36936 * 125.66480 * 203.97502 * 17 16 15 19 19 H 1.07994 * 120.00113 * 167.86437 * 18 17 16 20 20 C 1.38815 * 119.99871 * 347.86517 * 18 17 16 21 21 N 1.31622 * 120.00146 * 348.51010 * 20 18 17 22 22 Si 1.86802 * 119.99826 * 168.50741 * 20 18 17 23 23 H 1.48500 * 109.47024 * 94.92625 * 22 20 18 24 24 H 1.48502 * 109.46748 * 214.92455 * 22 20 18 25 25 H 1.48494 * 109.47128 * 334.92018 * 22 20 18 26 26 C 1.47189 * 108.67351 * 24.01330 * 17 16 15 27 27 O 1.42068 * 111.19143 * 309.80018 * 14 13 5 28 28 H 1.08997 * 109.47054 * 299.90503 * 1 2 3 29 29 H 1.09005 * 109.47039 * 59.90288 * 1 2 3 30 30 H 1.08999 * 109.47278 * 179.90065 * 1 2 3 31 31 H 1.08998 * 109.62758 * 53.14292 * 4 2 1 32 32 H 1.09000 * 109.61914 * 292.58504 * 4 2 1 33 33 H 1.07999 * 126.27306 * 0.25966 * 9 8 6 34 34 H 1.08002 * 125.42349 * 180.02562 * 11 10 9 35 35 H 1.09003 * 109.68283 * 168.87006 * 13 5 4 36 36 H 1.08995 * 109.68338 * 289.42160 * 13 5 4 37 37 H 1.08992 * 111.01094 * 271.16331 * 15 14 13 38 38 H 1.09001 * 111.00722 * 35.04003 * 15 14 13 39 39 H 1.09006 * 110.35318 * 204.77024 * 16 15 14 40 40 H 1.09003 * 110.43956 * 82.53245 * 16 15 14 41 41 H 0.96996 * 120.00228 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.90747 * 239.13367 * 26 17 16 43 43 H 1.08994 * 110.06747 * 117.95460 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7246 1.2500 5 7 3.5031 -0.8640 1.1450 6 6 4.3127 -0.4774 2.1508 7 8 3.8357 -0.0720 3.1942 8 6 5.7693 -0.5455 1.9876 9 6 6.7082 -0.0617 2.8497 10 7 7.9089 -0.3293 2.3264 11 6 7.7480 -0.9521 1.1896 12 8 6.4410 -1.1006 0.9520 13 6 4.0530 -1.4339 -0.0971 14 6 3.4245 -0.7148 -1.2809 15 6 3.9930 0.7181 -1.3881 16 6 3.8348 1.0015 -2.9039 17 7 4.1125 -0.2888 -3.5621 18 6 4.5430 -0.4509 -4.8519 19 1 4.9050 -1.4127 -5.1835 20 6 4.5140 0.6213 -5.7331 21 7 3.8709 1.7229 -5.4085 22 14 5.3877 0.5007 -7.3798 23 1 4.4213 0.0725 -8.4228 24 1 5.9496 1.8272 -7.7402 25 1 6.4869 -0.4933 -7.2853 26 6 3.8493 -1.3735 -2.6026 27 8 2.0089 -0.6770 -1.1663 28 1 -0.3633 0.5123 0.8908 29 1 -0.3633 0.5154 -0.8892 30 1 -0.3634 -1.0276 -0.0018 31 1 1.5837 -1.7115 1.3145 32 1 1.7924 -0.1435 2.1378 33 1 6.5170 0.4418 3.7858 34 1 8.5442 -1.2928 0.5442 35 1 5.1341 -1.2962 -0.1171 36 1 3.8168 -2.4967 -0.1494 37 1 3.4033 1.4178 -0.7959 38 1 5.0418 0.7455 -1.0927 39 1 4.5546 1.7541 -3.2260 40 1 2.8193 1.3295 -3.1259 41 1 3.8503 2.4719 -6.0244 42 1 4.7542 -1.9618 -2.4500 43 1 3.0485 -2.0138 -2.9724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071194992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:30 Heat of formation + Delta-G solvation = 1.242564 kcal Electronic energy + Delta-G solvation = -28789.318923 eV Core-core repulsion = 24838.456690 eV Total energy + Delta-G solvation = -3950.862233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67912 -40.65369 -38.89648 -36.35459 -35.51592 -34.58939 -33.16657 -31.54807 -30.70188 -29.35852 -28.61120 -26.98037 -25.79950 -24.04771 -23.43339 -22.96413 -21.90311 -20.62061 -20.13458 -19.34534 -17.98105 -17.33861 -17.07670 -17.00765 -16.68491 -15.99864 -15.30116 -15.03124 -14.76973 -14.52916 -14.31284 -14.18600 -13.85192 -13.53701 -13.39451 -12.99679 -12.59985 -12.41834 -12.27442 -12.04941 -11.79445 -11.72098 -11.63695 -11.11846 -11.03518 -10.97866 -10.85522 -10.57562 -10.51814 -10.26959 -10.11537 -10.02225 -9.75644 -9.67104 -9.34534 -8.65346 -8.49912 -6.84076 -5.79005 -3.12180 0.61758 2.15386 2.23299 2.72778 2.90431 3.37144 3.42823 3.44921 3.77270 3.91063 4.29856 4.44442 4.64543 4.70614 4.86272 4.97160 4.99650 5.08515 5.15801 5.28047 5.36651 5.41523 5.45770 5.50393 5.60057 5.67664 5.72214 5.82301 5.94481 6.00060 6.07490 6.12542 6.23225 6.34794 6.39223 6.53782 6.59417 6.98196 7.31016 7.37875 7.54009 7.58998 7.72902 7.73380 8.19763 9.13667 9.75833 10.43761 11.34593 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.004681 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.990607 B = 5980.138918 C = 7594.667845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.068 3.932 3 H 0.068 0.932 4 C 0.085 3.915 5 N -0.598 5.598 6 C 0.610 3.390 7 O -0.523 6.523 8 C -0.107 4.107 9 C 0.053 3.947 10 N -0.496 5.496 11 C 0.199 3.801 12 O -0.181 6.181 13 C 0.077 3.923 14 C 0.098 3.902 15 C -0.168 4.168 16 C 0.183 3.817 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.915 5.915 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.154 3.846 27 O -0.350 6.350 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.196 0.804 34 H 0.256 0.744 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.039 0.961 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -5.501 14.976 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 H 0.086 0.914 4 C -0.037 4.037 5 N -0.330 5.330 6 C 0.398 3.602 7 O -0.402 6.402 8 C -0.162 4.162 9 C -0.090 4.090 10 N -0.224 5.224 11 C -0.025 4.025 12 O -0.068 6.068 13 C -0.045 4.045 14 C 0.057 3.943 15 C -0.207 4.207 16 C 0.058 3.942 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.095 0.905 20 C -0.201 4.201 21 N -0.561 5.561 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 O -0.269 6.269 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.213 0.787 34 H 0.272 0.728 35 H 0.134 0.866 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.940 -5.134 15.392 16.253 hybrid contribution 0.060 -0.068 -1.128 1.132 sum 0.999 -5.202 14.264 15.216 Atomic orbital electron populations 1.21688 0.92123 1.03093 1.02904 1.22498 0.95574 0.96153 0.84781 0.91427 1.22490 0.78442 1.02378 1.00372 1.48067 1.07197 1.61198 1.16502 1.16462 0.82242 0.77943 0.83597 1.90867 1.74124 1.48259 1.26910 1.23136 0.94242 1.08167 0.90626 1.23573 0.86016 0.98928 1.00449 1.70479 1.26865 1.16060 1.08992 1.28609 0.83626 0.95582 0.94674 1.84686 1.20206 1.61083 1.40805 1.22818 1.00824 0.98183 0.82671 1.22155 0.81082 0.96435 0.94632 1.23507 0.99875 0.95466 1.01834 1.21295 0.99765 0.88869 0.84311 1.44472 1.78634 0.99920 1.09429 1.18980 1.34763 0.97056 0.85243 0.90526 1.24847 1.00158 0.97032 0.98089 1.69973 1.44323 1.05279 1.36518 0.86145 0.79294 0.76925 0.83640 1.21554 1.21624 1.20516 1.21053 0.97282 0.92141 0.86803 1.87944 1.20117 1.76657 1.42148 0.91046 0.90978 0.91669 0.90204 0.88051 0.78716 0.72839 0.86565 0.90236 0.91835 0.91748 0.91990 0.94869 0.93659 0.94343 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.57 37.16 0.36 -1.20 16 2 C 0.07 0.94 3.17 -26.59 -0.08 0.86 16 3 H 0.07 0.99 6.13 -51.93 -0.32 0.68 16 4 C 0.09 1.06 5.90 -3.54 -0.02 1.04 16 5 N -0.60 -8.18 2.92 -174.39 -0.51 -8.69 16 6 C 0.61 8.68 7.68 -12.83 -0.10 8.58 16 7 O -0.52 -8.31 16.39 5.21 0.09 -8.22 16 8 C -0.11 -1.38 6.88 -36.84 -0.25 -1.63 16 9 C 0.05 0.63 11.67 -17.43 -0.20 0.43 16 10 N -0.50 -5.81 11.26 -14.67 -0.17 -5.98 16 11 C 0.20 1.91 13.21 52.25 0.69 2.60 16 12 O -0.18 -2.12 7.32 4.42 0.03 -2.09 16 13 C 0.08 1.08 4.98 -4.05 -0.02 1.06 16 14 C 0.10 1.68 0.83 -89.93 -0.07 1.61 16 15 C -0.17 -3.15 5.90 -24.86 -0.15 -3.29 16 16 C 0.18 4.38 5.39 -2.44 -0.01 4.37 16 17 N -0.60 -14.94 3.40 -170.23 -0.58 -15.52 16 18 C -0.23 -6.33 10.22 -15.06 -0.15 -6.48 16 19 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 20 C 0.00 -0.11 5.37 -17.43 -0.09 -0.20 16 21 N -0.91 -26.67 10.85 55.49 0.60 -26.06 16 22 Si 0.91 21.61 29.57 -169.99 -5.03 16.59 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.15 3.10 6.61 -3.32 -0.02 3.08 16 27 O -0.35 -6.07 9.87 -35.23 -0.35 -6.42 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.20 7.10 -51.93 -0.37 0.83 16 33 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.26 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.60 3.78 -54.01 -0.20 1.40 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.13 5.98 -51.93 -0.31 0.82 16 38 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 39 H 0.06 1.64 7.16 -51.93 -0.37 1.27 16 40 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.04 0.71 7.79 -51.93 -0.40 0.31 16 43 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -33.23 345.13 -6.57 -39.80 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.73 Total: 0.58 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.14 Total: 10.81 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.65 Total: -56.25 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.23 Total: -16.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.23 -6.57 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071194992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.045 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds