Wall clock time and date at job start Tue Mar 31 2020 12:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.51365 * 2 1 4 4 C 1.53279 * 109.50849 * 120.09931 * 2 1 3 5 5 N 1.47164 * 108.55430 * 172.86684 * 4 2 1 6 6 C 1.34775 * 121.06774 * 128.84898 * 5 4 2 7 7 O 1.21680 * 120.00045 * 3.98774 * 6 5 4 8 8 C 1.46727 * 120.00128 * 183.97959 * 6 5 4 9 9 C 1.36336 * 126.64429 * 172.49015 * 8 6 5 10 10 N 1.33693 * 107.45332 * 180.02562 * 9 8 6 11 11 C 1.30615 * 108.99544 * 359.97438 * 10 9 8 12 12 O 1.33666 * 109.15420 * 0.02562 * 11 10 9 13 13 C 1.47310 * 117.86681 * 309.12228 * 5 4 2 14 14 C 1.52106 * 108.60873 * 49.08474 * 13 5 4 15 15 C 1.54525 * 109.89818 * 72.25691 * 14 13 5 16 16 C 1.55020 * 101.52572 * 153.09746 * 15 14 13 17 17 N 1.47483 * 104.90335 * 323.62947 * 16 15 14 18 18 C 1.36936 * 125.66480 * 203.97502 * 17 16 15 19 19 H 1.07994 * 120.00113 * 167.86437 * 18 17 16 20 20 C 1.38815 * 119.99871 * 347.86517 * 18 17 16 21 21 N 1.31622 * 120.00146 * 348.51010 * 20 18 17 22 22 Si 1.86802 * 119.99826 * 168.50741 * 20 18 17 23 23 H 1.48500 * 109.47024 * 94.92625 * 22 20 18 24 24 H 1.48502 * 109.46748 * 214.92455 * 22 20 18 25 25 H 1.48494 * 109.47128 * 334.92018 * 22 20 18 26 26 C 1.47189 * 108.67351 * 24.01330 * 17 16 15 27 27 O 1.42068 * 111.19143 * 309.80018 * 14 13 5 28 28 H 1.08997 * 109.47054 * 299.90503 * 1 2 3 29 29 H 1.09005 * 109.47039 * 59.90288 * 1 2 3 30 30 H 1.08999 * 109.47278 * 179.90065 * 1 2 3 31 31 H 1.08998 * 109.62758 * 53.14292 * 4 2 1 32 32 H 1.09000 * 109.61914 * 292.58504 * 4 2 1 33 33 H 1.07999 * 126.27306 * 0.25966 * 9 8 6 34 34 H 1.08002 * 125.42349 * 180.02562 * 11 10 9 35 35 H 1.09003 * 109.68283 * 168.87006 * 13 5 4 36 36 H 1.08995 * 109.68338 * 289.42160 * 13 5 4 37 37 H 1.08992 * 111.01094 * 271.16331 * 15 14 13 38 38 H 1.09001 * 111.00722 * 35.04003 * 15 14 13 39 39 H 1.09006 * 110.35318 * 204.77024 * 16 15 14 40 40 H 1.09003 * 110.43956 * 82.53245 * 16 15 14 41 41 H 0.96996 * 120.00228 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.90747 * 239.13367 * 26 17 16 43 43 H 1.08994 * 110.06747 * 117.95460 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7246 1.2500 5 7 3.5031 -0.8640 1.1450 6 6 4.3127 -0.4774 2.1508 7 8 3.8357 -0.0720 3.1942 8 6 5.7693 -0.5455 1.9876 9 6 6.7082 -0.0617 2.8497 10 7 7.9089 -0.3293 2.3264 11 6 7.7480 -0.9521 1.1896 12 8 6.4410 -1.1006 0.9520 13 6 4.0530 -1.4339 -0.0971 14 6 3.4245 -0.7148 -1.2809 15 6 3.9930 0.7181 -1.3881 16 6 3.8348 1.0015 -2.9039 17 7 4.1125 -0.2888 -3.5621 18 6 4.5430 -0.4509 -4.8519 19 1 4.9050 -1.4127 -5.1835 20 6 4.5140 0.6213 -5.7331 21 7 3.8709 1.7229 -5.4085 22 14 5.3877 0.5007 -7.3798 23 1 4.4213 0.0725 -8.4228 24 1 5.9496 1.8272 -7.7402 25 1 6.4869 -0.4933 -7.2853 26 6 3.8493 -1.3735 -2.6026 27 8 2.0089 -0.6770 -1.1663 28 1 -0.3633 0.5123 0.8908 29 1 -0.3633 0.5154 -0.8892 30 1 -0.3634 -1.0276 -0.0018 31 1 1.5837 -1.7115 1.3145 32 1 1.7924 -0.1435 2.1378 33 1 6.5170 0.4418 3.7858 34 1 8.5442 -1.2928 0.5442 35 1 5.1341 -1.2962 -0.1171 36 1 3.8168 -2.4967 -0.1494 37 1 3.4033 1.4178 -0.7959 38 1 5.0418 0.7455 -1.0927 39 1 4.5546 1.7541 -3.2260 40 1 2.8193 1.3295 -3.1259 41 1 3.8503 2.4719 -6.0244 42 1 4.7542 -1.9618 -2.4500 43 1 3.0485 -2.0138 -2.9724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071194992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:29 Heat of formation + Delta-G solvation = -23.877179 kcal Electronic energy + Delta-G solvation = -28790.408197 eV Core-core repulsion = 24838.456690 eV Total energy + Delta-G solvation = -3951.951507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.53302 -41.85923 -40.12496 -37.92498 -36.50036 -35.61166 -34.78385 -33.10227 -31.65457 -31.04597 -30.07721 -27.99423 -27.39487 -25.60037 -24.50943 -23.83575 -23.16999 -22.05595 -21.49988 -20.61311 -19.06178 -18.91745 -18.26151 -17.92427 -17.82079 -17.20724 -16.83260 -16.42188 -16.14460 -15.78109 -15.67454 -15.27841 -14.96719 -14.80239 -14.75529 -14.31578 -14.12260 -13.81393 -13.54581 -13.22419 -13.08916 -12.98613 -12.79304 -12.73675 -12.58302 -12.32747 -12.24207 -12.06378 -11.96246 -11.86000 -11.66303 -11.56834 -11.30239 -11.02382 -10.68820 -10.26312 -9.66431 -8.87643 -7.88877 -5.24271 -0.27655 1.25083 1.38105 1.48247 1.49212 1.59283 1.75417 1.91598 2.46510 2.59357 3.15618 3.30277 3.37179 3.41989 3.60386 3.72388 3.75868 3.84746 3.94738 4.00322 4.13475 4.21902 4.37888 4.43137 4.47122 4.50952 4.65624 4.67092 4.74684 4.78646 4.83501 4.93298 5.03695 5.04812 5.10489 5.27725 5.29822 5.38498 5.53171 5.65521 5.93059 6.16986 6.28843 6.45875 6.69683 7.05397 7.73374 8.41048 9.24280 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.004681 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.990607 B = 5980.138918 C = 7594.667845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.053 0.947 4 C 0.089 3.911 5 N -0.600 5.600 6 C 0.611 3.389 7 O -0.546 6.546 8 C -0.131 4.131 9 C 0.059 3.941 10 N -0.523 5.523 11 C 0.221 3.779 12 O -0.188 6.188 13 C 0.088 3.912 14 C 0.108 3.892 15 C -0.150 4.150 16 C 0.193 3.807 17 N -0.618 5.618 18 C -0.242 4.242 19 H 0.087 0.913 20 C -0.063 4.063 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.262 1.262 26 C 0.148 3.852 27 O -0.374 6.374 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.206 0.794 34 H 0.300 0.700 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.027 0.973 40 H -0.007 1.007 41 H 0.247 0.753 42 H 0.065 0.935 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -7.233 15.985 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 H 0.071 0.929 4 C -0.033 4.033 5 N -0.331 5.331 6 C 0.400 3.600 7 O -0.426 6.426 8 C -0.186 4.186 9 C -0.084 4.084 10 N -0.250 5.250 11 C -0.003 4.003 12 O -0.076 6.076 13 C -0.034 4.034 14 C 0.068 3.932 15 C -0.189 4.189 16 C 0.067 3.933 17 N -0.345 5.345 18 C -0.371 4.371 19 H 0.104 0.896 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.806 3.194 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.187 1.187 26 C 0.023 3.977 27 O -0.293 6.293 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.222 0.778 34 H 0.315 0.685 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.011 0.989 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.048 -6.901 16.428 17.936 hybrid contribution -0.266 0.456 -1.434 1.528 sum 1.782 -6.445 14.994 16.417 Atomic orbital electron populations 1.21707 0.90132 1.03948 1.03506 1.22707 0.97139 0.95216 0.84279 0.92907 1.22526 0.77921 1.03244 0.99559 1.48100 1.07674 1.61122 1.16183 1.16571 0.82810 0.77334 0.83281 1.90848 1.74763 1.49290 1.27683 1.22898 0.93811 1.10207 0.91691 1.23824 0.86068 0.97941 1.00545 1.70529 1.26749 1.17514 1.10238 1.29679 0.83541 0.92975 0.94079 1.84631 1.21040 1.61305 1.40606 1.22675 1.00930 0.98573 0.81231 1.21959 0.81550 0.95000 0.94732 1.23304 1.00812 0.97111 0.97639 1.20969 0.96279 0.88167 0.87859 1.44754 1.78514 1.01489 1.09693 1.19435 1.33980 0.97340 0.86351 0.89558 1.25708 1.01279 0.96854 1.01824 1.70183 1.46107 1.05976 1.37633 0.85084 0.78398 0.76788 0.79176 1.21564 1.22237 1.18655 1.21248 0.98101 0.91149 0.87208 1.87915 1.20018 1.77154 1.44223 0.88271 0.92543 0.90659 0.88441 0.87332 0.77760 0.68489 0.85832 0.88343 0.91149 0.90730 0.95432 0.98947 0.94367 0.91689 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.57 71.98 0.69 -2.13 16 2 C 0.06 1.71 3.17 30.69 0.10 1.80 16 3 H 0.05 1.54 6.13 -2.39 -0.01 1.53 16 4 C 0.09 2.02 5.90 86.35 0.51 2.53 16 5 N -0.60 -15.16 2.92 -823.89 -2.41 -17.57 16 6 C 0.61 16.35 7.68 86.46 0.66 17.02 16 7 O -0.55 -16.61 16.39 -4.28 -0.07 -16.68 16 8 C -0.13 -3.14 6.88 24.05 0.17 -2.97 16 9 C 0.06 1.30 11.67 83.97 0.98 2.28 16 10 N -0.52 -11.01 11.26 -315.10 -3.55 -14.55 16 11 C 0.22 3.50 13.21 130.42 1.72 5.22 16 12 O -0.19 -3.88 7.32 -7.11 -0.05 -3.93 16 13 C 0.09 2.26 4.98 85.93 0.43 2.69 16 14 C 0.11 3.62 0.83 -10.35 -0.01 3.61 16 15 C -0.15 -5.61 5.90 31.80 0.19 -5.42 16 16 C 0.19 9.61 5.39 86.88 0.47 10.08 16 17 N -0.62 -31.26 3.40 -692.49 -2.36 -33.61 16 18 C -0.24 -13.28 10.22 84.03 0.86 -12.42 16 19 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 20 C -0.06 -3.56 5.37 84.86 0.46 -3.10 16 21 N -0.95 -57.56 10.85 21.65 0.24 -57.32 16 22 Si 0.98 44.86 29.57 68.60 2.03 46.89 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 C 0.15 5.85 6.61 86.47 0.57 6.42 16 27 O -0.37 -12.75 9.87 -148.97 -1.47 -14.22 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 2.35 7.10 -2.39 -0.02 2.33 16 33 H 0.21 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.30 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.12 3.05 3.78 -35.45 -0.13 2.91 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.07 2.53 5.98 -2.39 -0.01 2.51 16 38 H 0.07 2.63 7.84 -2.39 -0.02 2.61 16 39 H 0.03 1.53 7.16 -2.38 -0.02 1.51 16 40 H -0.01 -0.43 8.00 -2.39 -0.02 -0.45 16 41 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.07 2.24 7.79 -2.38 -0.02 2.22 16 43 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 Total: -1.00 -74.26 345.13 1.06 -73.20 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.91 Total: 12.19 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 7.79 Total: 25.61 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -8.07 Total: -123.06 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.59 Total: -34.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.26 1.06 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071194992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.323 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds