Wall clock time and date at job start Tue Mar 31 2020 12:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.58512 * 2 1 4 4 C 1.53185 * 109.59194 * 120.28495 * 2 1 3 5 5 C 1.53031 * 109.31745 * 174.56258 * 4 2 1 6 6 C 1.53040 * 109.53903 * 298.63651 * 5 4 2 7 7 H 1.08996 * 109.49540 * 301.41079 * 6 5 4 8 8 N 1.46504 * 109.49883 * 181.31441 * 6 5 4 9 9 C 1.34775 * 120.00114 * 154.99700 * 8 6 5 10 10 O 1.21612 * 120.00104 * 0.02562 * 9 8 6 11 11 C 1.47290 * 120.00022 * 179.97438 * 9 8 6 12 12 C 1.36574 * 125.80395 * 179.71982 * 11 9 8 13 13 C 1.40071 * 106.92131 * 179.90651 * 12 11 9 14 14 C 1.36564 * 106.92645 * 0.35584 * 13 12 11 15 15 C 1.47291 * 125.80097 * 179.78473 * 14 13 12 16 16 N 1.34776 * 119.99671 * 179.97438 * 15 14 13 17 17 O 1.21605 * 120.00593 * 359.96553 * 15 14 13 18 18 O 1.34550 * 108.39270 * 359.77493 * 14 13 12 19 19 C 1.53188 * 109.31254 * 61.36477 * 6 5 4 20 20 N 1.46923 * 108.77476 * 305.36346 * 19 6 5 21 21 C 1.36940 * 120.63187 * 233.62740 * 20 19 6 22 22 H 1.08004 * 119.99750 * 150.88317 * 21 20 19 23 23 C 1.38807 * 120.00313 * 330.89013 * 21 20 19 24 24 N 1.31618 * 120.00261 * 160.72765 * 23 21 20 25 25 Si 1.86804 * 119.99714 * 340.72628 * 23 21 20 26 26 H 1.48498 * 109.46932 * 92.33603 * 25 23 21 27 27 H 1.48497 * 109.46797 * 212.33544 * 25 23 21 28 28 H 1.48502 * 109.47149 * 332.33574 * 25 23 21 29 29 H 1.08999 * 109.47311 * 299.99831 * 1 2 3 30 30 H 1.09009 * 109.47278 * 59.99908 * 1 2 3 31 31 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.49763 * 294.52074 * 4 2 1 33 33 H 1.09007 * 109.49387 * 54.61173 * 4 2 1 34 34 H 1.08999 * 109.46021 * 58.65846 * 5 4 2 35 35 H 1.09000 * 109.46302 * 178.61417 * 5 4 2 36 36 H 0.97004 * 120.00012 * 335.00221 * 8 6 5 37 37 H 1.07996 * 126.53741 * 0.02562 * 12 11 9 38 38 H 1.07997 * 126.52692 * 180.09488 * 13 12 11 39 39 H 0.96998 * 120.00566 * 359.97438 * 16 15 14 40 40 H 0.97010 * 119.99971 * 179.97438 * 16 15 14 41 41 H 1.08999 * 109.58759 * 65.15182 * 19 6 5 42 42 H 1.08998 * 109.58904 * 185.43533 * 19 6 5 43 43 H 0.96999 * 120.00064 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2462 5 6 3.5678 -0.8434 1.1727 6 6 3.9603 -1.6608 -0.0601 7 1 3.5036 -2.6488 -0.0019 8 7 5.4180 -1.7975 -0.1124 9 6 5.9743 -2.8394 -0.7615 10 8 5.2662 -3.6660 -1.3041 11 6 7.4398 -2.9765 -0.8145 12 6 8.1263 -3.9831 -1.4316 13 6 9.4894 -3.7238 -1.2405 14 6 9.5766 -2.5745 -0.5080 15 6 10.8236 -1.9265 -0.0667 16 7 10.7732 -0.7890 0.6543 17 8 11.8985 -2.4180 -0.3527 18 8 8.3298 -2.1345 -0.2583 19 6 3.4684 -0.9435 -1.3212 20 7 2.0253 -0.6990 -1.1937 21 6 1.1584 -1.1150 -2.1687 22 1 0.1413 -1.3730 -1.9126 23 6 1.5867 -1.2053 -3.4859 24 7 0.9166 -1.9416 -4.3468 25 14 3.1142 -0.2818 -4.0367 26 1 4.3011 -1.1641 -3.9031 27 1 2.9597 0.1287 -5.4554 28 1 3.2960 0.9241 -3.1894 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7638 -0.1655 2.1371 33 1 1.6049 -1.7246 1.2920 34 1 4.0045 0.1528 1.1021 35 1 3.9381 -1.3391 2.0701 36 1 5.9828 -1.1380 0.3202 37 1 7.6995 -4.8185 -1.9667 38 1 10.3140 -4.3214 -1.5999 39 1 9.9159 -0.3968 0.8823 40 1 11.5945 -0.3624 0.9453 41 1 3.9919 0.0065 -1.4289 42 1 3.6598 -1.5672 -2.1944 43 1 1.2162 -2.0050 -5.2672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071671116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:03 Heat of formation + Delta-G solvation = -33.048195 kcal Electronic energy + Delta-G solvation = -27421.486550 eV Core-core repulsion = 23469.137357 eV Total energy + Delta-G solvation = -3952.349192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.09700 -39.85768 -39.48733 -37.94967 -34.86898 -34.33344 -33.34478 -32.87428 -31.37088 -30.73765 -30.07946 -26.51851 -25.26164 -24.46684 -22.89276 -22.34418 -21.38605 -20.82517 -20.39773 -19.50228 -18.93130 -17.90418 -17.27836 -16.93029 -16.60377 -16.07652 -15.40198 -15.04094 -14.91435 -14.66310 -14.36743 -14.22589 -13.78481 -13.55945 -13.49828 -13.39872 -13.34716 -13.10110 -12.48174 -12.20497 -11.76749 -11.55913 -11.32781 -11.01177 -10.86328 -10.78385 -10.43925 -10.42203 -10.32668 -10.28695 -10.26588 -9.99063 -9.75175 -9.44267 -9.16355 -8.94848 -8.55220 -6.95842 -5.93177 -3.31648 0.35456 1.66176 2.04105 2.72526 2.90327 3.08951 3.18399 3.35866 3.47180 3.49672 4.30641 4.53121 4.54713 4.65802 4.91512 5.06400 5.15956 5.19540 5.28532 5.38148 5.45376 5.53591 5.66162 5.84578 5.89989 5.92758 6.04363 6.12167 6.16958 6.20155 6.29301 6.30274 6.36691 6.44981 6.49321 6.56660 6.72449 6.78526 6.95594 7.05305 7.45854 7.61678 7.96619 8.09431 8.36820 8.93714 9.73554 10.08718 11.22321 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003575 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.922786 B = 7829.648138 C = 8627.992284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.123 3.877 7 H 0.096 0.904 8 N -0.710 5.710 9 C 0.592 3.408 10 O -0.495 6.495 11 C -0.025 4.025 12 C -0.140 4.140 13 C -0.122 4.122 14 C -0.064 4.064 15 C 0.612 3.388 16 N -0.841 5.841 17 O -0.519 6.519 18 O -0.155 6.155 19 C 0.120 3.880 20 N -0.596 5.596 21 C -0.263 4.263 22 H 0.093 0.907 23 C 0.030 3.970 24 N -0.905 5.905 25 Si 0.877 3.123 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.272 1.272 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.399 0.601 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.409 0.591 40 H 0.411 0.589 41 H 0.025 0.975 42 H 0.080 0.920 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.319 3.198 13.771 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.018 3.982 7 H 0.115 0.885 8 N -0.361 5.361 9 C 0.375 3.625 10 O -0.370 6.370 11 C -0.080 4.080 12 C -0.160 4.160 13 C -0.143 4.143 14 C -0.118 4.118 15 C 0.396 3.604 16 N -0.405 5.405 17 O -0.396 6.396 18 O -0.051 6.051 19 C -0.007 4.007 20 N -0.321 5.321 21 C -0.391 4.391 22 H 0.111 0.889 23 C -0.169 4.169 24 N -0.547 5.547 25 Si 0.708 3.292 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.197 1.197 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.233 0.767 37 H 0.189 0.811 38 H 0.187 0.813 39 H 0.238 0.762 40 H 0.243 0.757 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.231 2.383 13.099 20.230 hybrid contribution 1.239 1.060 -0.155 1.638 sum 16.470 3.444 12.944 21.229 Atomic orbital electron populations 1.21810 0.95121 1.02056 1.00487 1.20516 0.93804 0.93349 0.86079 0.95211 1.22055 0.93836 1.01882 0.98954 1.21688 0.97792 0.99597 0.96381 1.21953 0.76869 1.01762 0.97594 0.88549 1.46076 1.09128 1.26098 1.54752 1.16709 0.83046 0.82726 0.80009 1.90969 1.59460 1.41979 1.44640 1.22766 0.90337 0.92797 1.02079 1.22045 0.92236 1.00268 1.01485 1.22001 0.97666 0.95998 0.98608 1.22208 0.83141 0.99084 1.07332 1.16603 0.85567 0.80447 0.77738 1.43689 1.13456 1.26693 1.56659 1.90923 1.27623 1.64310 1.56721 1.84008 1.14557 1.46005 1.60528 1.21704 0.85741 0.96995 0.96240 1.44363 1.01451 1.65353 1.20899 1.18902 0.95726 1.38887 0.85564 0.88914 1.25292 0.97300 0.98472 0.95879 1.69806 1.41207 1.38997 1.04699 0.87022 0.83894 0.81262 0.77058 1.21559 1.23098 1.19688 0.94050 0.91690 0.92299 0.92041 0.91471 0.91991 0.92256 0.76654 0.81092 0.81333 0.76192 0.75741 0.95740 0.90226 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.95 37.15 0.30 -2.11 16 2 C 0.17 3.10 3.49 -67.60 -0.24 2.87 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.89 5.37 -26.62 -0.14 -2.04 16 5 C -0.12 -1.58 5.35 -26.69 -0.14 -1.73 16 6 C 0.12 2.11 2.60 -67.81 -0.18 1.94 16 7 H 0.10 1.89 7.58 -51.93 -0.39 1.50 16 8 N -0.71 -10.27 5.08 -54.81 -0.28 -10.55 16 9 C 0.59 9.65 7.78 -12.58 -0.10 9.55 16 10 O -0.50 -10.20 16.52 5.27 0.09 -10.11 16 11 C -0.03 -0.34 7.14 -36.50 -0.26 -0.60 16 12 C -0.14 -1.72 10.60 -39.50 -0.42 -2.14 16 13 C -0.12 -1.34 10.60 -39.50 -0.42 -1.76 16 14 C -0.06 -0.69 7.14 -36.51 -0.26 -0.96 16 15 C 0.61 6.15 8.08 -12.58 -0.10 6.04 16 16 N -0.84 -4.96 8.87 30.40 0.27 -4.69 16 17 O -0.52 -6.80 17.70 5.27 0.09 -6.71 16 18 O -0.15 -1.71 10.14 4.35 0.04 -1.66 16 19 C 0.12 2.60 3.77 -3.71 -0.01 2.58 16 20 N -0.60 -13.71 2.75 -164.78 -0.45 -14.16 16 21 C -0.26 -7.18 9.05 -15.06 -0.14 -7.31 16 22 H 0.09 2.65 6.40 -52.48 -0.34 2.32 16 23 C 0.03 0.87 5.24 -17.43 -0.09 0.78 16 24 N -0.90 -28.00 13.97 55.49 0.78 -27.22 16 25 Si 0.88 22.83 24.34 -169.99 -4.14 18.69 16 26 H -0.29 -7.53 6.63 56.52 0.37 -7.15 16 27 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 28 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.25 7.65 -51.92 -0.40 0.86 16 31 H 0.06 1.09 7.43 -51.93 -0.39 0.71 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 4.35 8.36 -40.82 -0.34 4.01 16 37 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.41 1.66 8.59 -40.82 -0.35 1.30 16 40 H 0.41 1.66 8.93 -40.82 -0.36 1.30 16 41 H 0.02 0.52 7.03 -51.93 -0.37 0.16 16 42 H 0.08 2.02 4.62 -51.93 -0.24 1.78 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -35.06 353.76 -6.22 -41.28 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.75 Total: 4.69 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.20 Total: 5.12 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.31 Total: -56.63 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.22 Total: -18.48 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.06 -6.22 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.229 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds