Wall clock time and date at job start Tue Mar 31 2020 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21681 * 120.00175 * 359.97438 * 9 8 6 11 11 C 1.46777 * 120.00040 * 180.02562 * 9 8 6 12 12 C 1.36062 * 125.65516 * 179.97438 * 11 9 8 13 13 C 1.41727 * 106.62348 * 180.02562 * 12 11 9 14 14 C 1.47488 * 126.77246 * 180.02562 * 13 12 11 15 15 N 1.34781 * 120.00270 * 180.02562 * 14 13 12 16 16 O 1.21600 * 120.00063 * 359.97438 * 14 13 12 17 17 C 1.37802 * 106.45739 * 0.02562 * 13 12 11 18 18 O 1.33498 * 108.34036 * 359.73407 * 17 13 12 19 19 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 20 20 N 1.46923 * 108.77672 * 305.36978 * 19 6 5 21 21 C 1.36936 * 120.62934 * 233.59047 * 20 19 6 22 22 H 1.07995 * 120.00547 * 149.22205 * 21 20 19 23 23 C 1.38822 * 119.99709 * 329.21595 * 21 20 19 24 24 N 1.31620 * 119.99894 * 346.00001 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 165.99941 * 23 21 20 26 26 H 1.48494 * 109.47391 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 120.00367 * 25 23 21 28 28 H 1.48491 * 109.47167 * 239.99841 * 25 23 21 29 29 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 30 30 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 31 31 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 32 32 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 33 33 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 34 34 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 35 35 H 1.08999 * 109.46060 * 58.65346 * 5 4 2 36 36 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 37 37 H 1.07997 * 126.68419 * 0.02562 * 12 11 9 38 38 H 0.96993 * 119.99553 * 359.97438 * 15 14 13 39 39 H 0.97000 * 119.99516 * 179.97438 * 15 14 13 40 40 H 1.08003 * 125.83253 * 180.02562 * 17 13 12 41 41 H 1.08998 * 109.58839 * 185.57402 * 19 6 5 42 42 H 1.09005 * 109.58192 * 65.15315 * 19 6 5 43 43 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2557 -3.6698 -1.3194 11 6 7.4269 -2.9873 -0.8287 12 6 8.1045 -3.9881 -1.4536 13 6 9.4838 -3.7304 -1.2536 14 6 10.6138 -4.5406 -1.7455 15 7 11.8798 -4.1670 -1.4733 16 8 10.4032 -5.5462 -2.3960 17 6 9.5608 -2.5736 -0.5088 18 8 8.3195 -2.1438 -0.2709 19 6 3.4650 -0.9453 -1.3250 20 7 2.0226 -0.6980 -1.1954 21 6 1.1538 -1.1099 -2.1704 22 1 0.1443 -1.3920 -1.9102 23 6 1.5706 -1.1649 -3.4934 24 7 2.6879 -0.5715 -3.8566 25 14 0.5458 -2.0812 -4.7582 26 1 -0.6549 -2.6559 -4.1000 27 1 0.1218 -1.1411 -5.8267 28 1 1.3555 -3.1744 -5.3534 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3633 0.5182 0.8874 31 1 -0.3633 0.5095 -0.8925 32 1 1.7660 -0.1696 2.1366 33 1 1.6029 -1.7270 1.2891 34 1 3.9378 -1.3475 2.0652 35 1 4.0061 0.1459 1.0994 36 1 5.9812 -1.1499 0.3145 37 1 7.6751 -4.8172 -1.9964 38 1 12.0477 -3.3651 -0.9541 39 1 12.6229 -4.7001 -1.7965 40 1 10.4701 -2.0937 -0.1783 41 1 3.6519 -1.5690 -2.1992 42 1 3.9904 0.0038 -1.4317 43 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071815302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:21 Heat of formation + Delta-G solvation = -71.840096 kcal Electronic energy + Delta-G solvation = -27132.888036 eV Core-core repulsion = 23178.856700 eV Total energy + Delta-G solvation = -3954.031335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.93999 -40.91378 -40.24373 -39.22280 -36.15913 -34.99764 -34.67200 -34.04238 -32.57157 -31.77965 -30.82682 -27.79215 -26.85828 -25.09283 -24.59974 -23.83884 -22.19815 -22.00978 -21.25403 -20.75239 -19.77964 -18.35631 -18.07721 -17.62665 -17.47995 -17.33114 -17.09350 -16.72091 -15.94144 -15.75240 -15.60174 -15.41958 -15.22961 -14.97316 -14.80479 -14.46918 -14.37551 -14.12302 -13.78480 -13.48345 -13.09060 -12.78495 -12.72006 -12.56530 -12.29699 -12.13456 -11.99325 -11.72907 -11.53751 -11.43590 -11.27186 -11.22651 -11.12737 -10.75373 -10.56216 -10.28375 -9.84904 -8.60758 -7.86032 -5.33630 -0.12292 0.41778 1.39028 1.41079 1.44663 1.52169 1.93948 2.07186 2.26268 2.48226 2.52908 3.30933 3.41710 3.52194 3.71081 3.88032 3.97279 4.09900 4.25138 4.25510 4.38840 4.45048 4.59931 4.70864 4.72246 4.80414 4.89802 4.92020 5.02357 5.08177 5.18129 5.26314 5.32010 5.36230 5.54400 5.56588 5.61612 5.71125 5.78197 5.83960 6.39015 6.41260 6.47576 7.04799 7.16861 7.27455 7.89554 8.39060 9.19110 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003293 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.527186 B = 8500.889614 C = 9865.261006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.129 3.871 7 H 0.056 0.944 8 N -0.692 5.692 9 C 0.592 3.408 10 O -0.564 6.564 11 C -0.084 4.084 12 C -0.089 4.089 13 C -0.271 4.271 14 C 0.593 3.407 15 N -0.820 5.820 16 O -0.595 6.595 17 C 0.100 3.900 18 O -0.142 6.142 19 C 0.180 3.820 20 N -0.603 5.603 21 C -0.248 4.248 22 H 0.075 0.925 23 C -0.053 4.053 24 N -0.934 5.934 25 Si 0.955 3.045 26 H -0.262 1.262 27 H -0.288 1.288 28 H -0.302 1.302 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.417 0.583 37 H 0.142 0.858 38 H 0.421 0.579 39 H 0.416 0.584 40 H 0.290 0.710 41 H 0.040 0.960 42 H 0.001 0.999 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.501 2.139 15.751 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.074 0.926 8 N -0.342 5.342 9 C 0.379 3.621 10 O -0.445 6.445 11 C -0.136 4.136 12 C -0.110 4.110 13 C -0.276 4.276 14 C 0.379 3.621 15 N -0.385 5.385 16 O -0.477 6.477 17 C 0.026 3.974 18 O -0.034 6.034 19 C 0.052 3.948 20 N -0.327 5.327 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.248 4.248 24 N -0.580 5.580 25 Si 0.784 3.216 26 H -0.186 1.186 27 H -0.215 1.215 28 H -0.230 1.230 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.160 0.840 38 H 0.254 0.746 39 H 0.249 0.751 40 H 0.305 0.695 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.577 1.284 15.027 23.161 hybrid contribution 0.114 -0.450 -1.495 1.566 sum 17.691 0.834 13.532 22.288 Atomic orbital electron populations 1.21736 0.94792 1.01122 1.01065 1.20832 0.94294 0.93467 0.86656 0.95861 1.21956 0.94444 1.00952 0.98360 1.21653 0.97183 1.00050 0.95555 1.21675 0.78184 0.99650 0.98196 0.92551 1.45772 1.08343 1.26231 1.53899 1.16913 0.84459 0.82021 0.78730 1.90915 1.61478 1.44601 1.47471 1.21407 0.89337 0.95066 1.07769 1.21862 0.93086 0.98383 0.97694 1.20608 0.93336 1.02100 1.11536 1.17315 0.83661 0.82988 0.78115 1.43360 1.05673 1.31754 1.57713 1.90844 1.85898 1.28594 1.42357 1.26262 0.87090 0.91660 0.92347 1.83957 1.15767 1.44540 1.59151 1.20752 0.83998 0.95344 0.94678 1.44305 1.02413 1.65744 1.20230 1.19491 0.95847 1.36182 0.86356 0.90791 1.25831 0.99020 1.00786 0.99162 1.70147 1.25413 1.46218 1.16247 0.85381 0.78702 0.77937 0.79611 1.18553 1.21459 1.22999 0.93611 0.90215 0.94375 0.88367 0.92864 0.89359 0.90554 0.74574 0.83995 0.74626 0.75100 0.69490 0.94191 0.98094 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.96 71.98 0.57 -4.04 16 2 C 0.15 5.97 3.50 44.97 0.16 6.12 16 3 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -3.54 5.37 30.67 0.16 -3.38 16 5 C -0.11 -3.02 5.36 30.62 0.16 -2.86 16 6 C 0.13 4.96 2.60 45.07 0.12 5.08 16 7 H 0.06 2.52 7.58 -2.39 -0.02 2.51 16 8 N -0.69 -22.63 5.08 -446.05 -2.26 -24.89 16 9 C 0.59 22.29 7.76 86.48 0.67 22.96 16 10 O -0.56 -27.40 16.51 -4.29 -0.07 -27.48 16 11 C -0.08 -2.47 7.09 24.00 0.17 -2.30 16 12 C -0.09 -2.67 10.41 22.63 0.24 -2.43 16 13 C -0.27 -5.53 6.16 -20.08 -0.12 -5.65 16 14 C 0.59 12.28 8.09 86.68 0.70 12.98 16 15 N -0.82 -6.18 8.87 -175.84 -1.56 -7.74 16 16 O -0.60 -19.41 17.77 -4.03 -0.07 -19.48 16 17 C 0.10 1.04 11.64 67.72 0.79 1.83 16 18 O -0.14 -2.63 10.33 -0.79 -0.01 -2.64 16 19 C 0.18 8.98 4.84 86.36 0.42 9.40 16 20 N -0.60 -30.46 2.98 -675.23 -2.01 -32.47 16 21 C -0.25 -13.97 8.54 84.04 0.72 -13.25 16 22 H 0.07 4.02 6.27 -2.91 -0.02 4.00 16 23 C -0.05 -3.12 4.97 84.86 0.42 -2.70 16 24 N -0.93 -58.55 11.21 21.65 0.24 -58.30 16 25 Si 0.95 48.21 29.58 68.60 2.03 50.24 16 26 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 29 H 0.04 1.68 7.44 -2.39 -0.02 1.66 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.42 10.11 8.34 -92.70 -0.77 9.34 16 37 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.42 -0.79 7.77 -92.71 -0.72 -1.51 16 39 H 0.42 2.40 8.93 -92.71 -0.83 1.58 16 40 H 0.29 -1.49 7.46 -2.91 -0.02 -1.51 16 41 H 0.04 2.43 6.17 -2.39 -0.01 2.41 16 42 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 43 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -91.47 358.89 0.22 -91.25 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -1.24 Total: 9.76 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 5.18 Total: 21.76 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.60 Total: -123.41 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.15 Total: -49.60 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -91.47 0.22 -91.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071815302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.410 kcal (2) G-P(sol) polarization free energy of solvation -91.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds