Wall clock time and date at job start Tue Mar 31 2020 12:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35507 * 117.00153 * 2 1 4 4 C 1.39211 * 120.89565 * 0.02562 * 3 2 1 5 5 C 1.37906 * 119.38830 * 179.97438 * 4 3 2 6 6 N 1.32075 * 121.29145 * 359.97438 * 5 4 3 7 7 C 1.32192 * 121.97841 * 359.73950 * 6 5 4 8 8 O 1.35425 * 119.77864 * 180.29134 * 7 6 5 9 9 C 1.40291 * 120.44217 * 0.55060 * 7 6 5 10 10 C 1.47226 * 120.64955 * 179.72523 * 9 7 6 11 11 O 1.21627 * 120.00093 * 269.71275 * 10 9 7 12 12 N 1.34777 * 120.00377 * 89.72227 * 10 9 7 13 13 C 1.46502 * 120.00300 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.77750 * 323.21374 * 13 12 10 15 15 C 1.55154 * 110.71968 * 86.45165 * 13 12 10 16 16 C 1.54902 * 101.58503 * 153.86747 * 15 13 12 17 17 N 1.47429 * 104.83115 * 322.98927 * 16 15 13 18 18 C 1.36932 * 125.65288 * 204.09307 * 17 16 15 19 19 H 1.07997 * 120.00182 * 169.85748 * 18 17 16 20 20 C 1.38815 * 119.99580 * 349.85471 * 18 17 16 21 21 N 1.31622 * 120.00398 * 350.46777 * 20 18 17 22 22 Si 1.86804 * 119.99954 * 170.47351 * 20 18 17 23 23 H 1.48496 * 109.47437 * 94.13366 * 22 20 18 24 24 H 1.48497 * 109.47045 * 214.13515 * 22 20 18 25 25 H 1.48505 * 109.46651 * 334.13237 * 22 20 18 26 26 C 1.47029 * 108.70212 * 24.12779 * 17 16 15 27 27 H 1.08995 * 109.87955 * 239.52569 * 26 17 16 28 28 C 1.52997 * 109.88179 * 118.51031 * 26 17 16 29 29 H 1.08994 * 109.46777 * 60.00787 * 1 2 3 30 30 H 1.08999 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47404 * 300.00189 * 1 2 3 32 32 H 1.07994 * 120.30706 * 359.96399 * 4 3 2 33 33 H 1.08002 * 119.35787 * 180.02562 * 5 4 3 34 34 H 0.96697 * 114.00263 * 270.25329 * 8 7 6 35 35 H 0.97001 * 119.99940 * 359.97438 * 12 10 9 36 36 H 1.08999 * 111.00494 * 35.79114 * 15 13 12 37 37 H 1.09004 * 111.00327 * 271.93930 * 15 13 12 38 38 H 1.09003 * 110.36786 * 81.82070 * 16 15 13 39 39 H 1.08995 * 110.37342 * 204.15052 * 16 15 13 40 40 H 0.96998 * 120.00091 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.46627 * 61.45695 * 28 26 17 42 42 H 1.09000 * 109.46986 * 181.45085 * 28 26 17 43 43 H 1.08998 * 109.47476 * 301.45684 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3866 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2818 3.6626 0.0016 7 6 4.0355 2.5766 0.0067 8 8 5.3846 2.6942 0.0130 9 6 3.4472 1.3030 0.0002 10 6 4.2823 0.0905 -0.0002 11 8 4.6272 -0.4100 -1.0537 12 7 4.6644 -0.4651 1.1668 13 6 5.4949 -1.6720 1.1664 14 1 5.2113 -2.3362 0.3500 15 6 6.9992 -1.3031 1.0766 16 6 7.6610 -2.5283 1.7551 17 7 6.7444 -2.8940 2.8504 18 6 7.0893 -3.5792 3.9846 19 1 6.3883 -3.6577 4.8024 20 6 8.3401 -4.1731 4.0832 21 7 9.1214 -4.2415 3.0262 22 14 8.9145 -4.8754 5.7162 23 1 8.5939 -6.3242 5.7722 24 1 10.3817 -4.6877 5.8471 25 1 8.2244 -4.1723 6.8274 26 6 5.3982 -2.4017 2.5228 27 1 5.0593 -1.7090 3.2930 28 6 4.4257 -3.5780 2.4163 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2250 2.3528 0.0004 33 1 1.3882 4.5130 0.0019 34 1 5.7804 2.7310 -0.8685 35 1 4.3895 -0.0658 2.0070 36 1 7.2109 -0.3883 1.6302 37 1 7.3179 -1.2121 0.0382 38 1 7.7522 -3.3513 1.0462 39 1 8.6393 -2.2592 2.1531 40 1 9.9953 -4.6569 3.0951 41 1 4.3732 -4.0938 3.3751 42 1 3.4361 -3.2080 2.1481 43 1 4.7749 -4.2700 1.6501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088984237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:57 Heat of formation + Delta-G solvation = -72.019745 kcal Electronic energy + Delta-G solvation = -27624.709124 eV Core-core repulsion = 23670.669998 eV Total energy + Delta-G solvation = -3954.039126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16267 -40.67492 -39.85619 -39.06707 -37.81981 -35.61132 -33.96640 -32.88058 -32.09130 -31.60662 -30.39131 -28.44515 -26.86614 -25.91228 -25.16641 -23.89373 -22.42955 -21.67072 -21.48267 -20.24849 -18.94802 -18.66053 -18.60022 -18.11235 -17.59986 -16.96095 -16.62186 -16.33489 -15.99460 -15.80346 -15.64538 -15.46276 -15.27260 -14.88508 -14.37808 -14.14110 -14.00562 -13.84533 -13.61451 -13.22488 -12.91945 -12.90156 -12.82116 -12.61014 -12.53576 -12.46493 -12.28348 -12.13887 -11.94948 -11.63528 -11.56527 -11.37777 -10.69250 -10.56144 -10.16503 -10.09528 -10.03123 -8.88154 -7.85630 -5.21235 -0.31207 0.08287 1.41675 1.47667 1.49067 1.58507 1.88502 2.02543 2.42097 2.51792 2.75682 3.34122 3.40915 3.59358 3.74967 3.77650 3.82879 3.88874 3.95352 4.17034 4.31170 4.35466 4.38773 4.47870 4.50726 4.59782 4.61679 4.75136 4.79219 4.84729 4.92822 5.02545 5.09130 5.25193 5.33059 5.47504 5.54261 5.58025 5.69475 6.06453 6.20386 6.41864 6.42370 6.80448 7.07691 7.08849 7.75934 8.42726 9.26529 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020429 B = 0.003201 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.289842 B = 8746.274525 C = 9342.136226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.210 3.790 4 C -0.259 4.259 5 C 0.177 3.823 6 N -0.543 5.543 7 C 0.376 3.624 8 O -0.487 6.487 9 C -0.256 4.256 10 C 0.589 3.411 11 O -0.574 6.574 12 N -0.691 5.691 13 C 0.154 3.846 14 H 0.080 0.920 15 C -0.138 4.138 16 C 0.183 3.817 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.084 0.916 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.152 3.848 27 H 0.050 0.950 28 C -0.144 4.144 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.190 0.810 33 H 0.210 0.790 34 H 0.422 0.578 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.069 0.931 38 H -0.002 1.002 39 H 0.039 0.961 40 H 0.247 0.753 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.888 16.288 -6.496 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.154 3.846 4 C -0.279 4.279 5 C 0.022 3.978 6 N -0.266 5.266 7 C 0.197 3.803 8 O -0.297 6.297 9 C -0.264 4.264 10 C 0.375 3.625 11 O -0.453 6.453 12 N -0.340 5.340 13 C 0.049 3.951 14 H 0.098 0.902 15 C -0.177 4.177 16 C 0.058 3.942 17 N -0.338 5.338 18 C -0.363 4.363 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.045 3.955 27 H 0.068 0.932 28 C -0.203 4.203 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.207 0.793 33 H 0.227 0.773 34 H 0.285 0.715 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.016 0.984 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.018 16.335 -6.555 27.415 hybrid contribution 0.466 -1.441 0.484 1.590 sum -20.552 14.894 -6.071 26.098 Atomic orbital electron populations 1.23608 0.74415 1.06323 1.03769 1.86097 1.25197 1.26008 1.86405 1.19283 0.89632 0.86558 0.89080 1.22555 1.03700 0.90924 1.10707 1.23213 0.87752 0.99172 0.87677 1.67412 1.08883 1.31497 1.18857 1.18879 0.84945 0.85573 0.90914 1.84641 1.14098 1.95107 1.35889 1.20239 0.92809 0.94400 1.18972 1.17831 0.78433 0.82824 0.83460 1.90776 1.57832 1.64231 1.32478 1.45838 1.51699 1.27824 1.08655 1.21739 0.89902 0.85793 0.97715 0.90239 1.23190 0.95202 0.98930 1.00393 1.21116 0.93354 0.91506 0.88255 1.44731 1.03708 1.65153 1.20198 1.19339 0.99248 1.25380 0.92344 0.89867 1.25658 0.98221 1.01214 1.00665 1.70163 1.10693 1.49875 1.29065 0.85096 0.76918 0.77925 0.79554 1.21478 1.22236 1.19146 1.21177 0.86502 0.94591 0.93190 0.93239 1.22096 0.98577 0.98594 1.01065 0.90089 0.86661 0.89745 0.79314 0.77305 0.71538 0.75504 0.91126 0.91278 0.98421 0.94213 0.94354 0.93262 0.91226 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.22 16 2 O -0.33 -6.60 10.03 -88.08 -0.88 -7.48 16 3 C 0.21 4.24 6.74 23.09 0.16 4.40 16 4 C -0.26 -3.02 9.09 22.43 0.20 -2.82 16 5 C 0.18 2.22 11.15 84.58 0.94 3.16 16 6 N -0.54 -11.37 10.37 -308.26 -3.20 -14.57 16 7 C 0.38 9.29 7.77 85.14 0.66 9.95 16 8 O -0.49 -12.10 13.01 -87.20 -1.13 -13.24 16 9 C -0.26 -6.72 5.66 -19.83 -0.11 -6.83 16 10 C 0.59 19.34 6.42 86.61 0.56 19.89 16 11 O -0.57 -23.05 16.84 -4.12 -0.07 -23.12 16 12 N -0.69 -22.05 5.20 -440.36 -2.29 -24.34 16 13 C 0.15 5.87 2.76 46.18 0.13 6.00 16 14 H 0.08 3.29 7.42 -2.39 -0.02 3.27 16 15 C -0.14 -5.72 6.77 31.98 0.22 -5.50 16 16 C 0.18 9.45 5.42 86.85 0.47 9.92 16 17 N -0.61 -31.53 3.13 -668.27 -2.09 -33.62 16 18 C -0.23 -13.01 9.83 84.03 0.83 -12.19 16 19 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 20 C -0.06 -3.67 5.40 84.86 0.46 -3.21 16 21 N -0.95 -57.85 10.69 21.65 0.23 -57.62 16 22 Si 0.98 45.89 29.56 68.60 2.03 47.92 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.15 6.23 3.47 45.34 0.16 6.38 16 27 H 0.05 1.91 7.69 -2.39 -0.02 1.90 16 28 C -0.14 -5.44 9.15 71.98 0.66 -4.78 16 29 H 0.08 0.37 7.71 -2.39 -0.02 0.36 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.35 7.71 -2.39 -0.02 0.33 16 32 H 0.19 0.57 6.45 -2.91 -0.02 0.55 16 33 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.42 7.25 9.06 -74.06 -0.67 6.58 16 35 H 0.41 11.40 8.29 -92.71 -0.77 10.63 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 38 H 0.00 -0.13 8.07 -2.39 -0.02 -0.15 16 39 H 0.04 2.27 6.94 -2.39 -0.02 2.25 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 41 H 0.05 1.90 8.02 -2.39 -0.02 1.88 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -79.70 361.89 -1.35 -81.05 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.38 Total: 19.42 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 6.44 Total: 25.60 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -7.35 Total: -130.15 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -2.09 Total: -43.84 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.70 -1.35 -81.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088984237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.031 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds