Wall clock time and date at job start Tue Mar 31 2020 12:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.63948 * 2 1 4 4 C 1.54325 * 110.72088 * 236.66224 * 2 1 3 5 5 N 1.47018 * 107.27131 * 219.44268 * 4 2 1 6 6 C 1.36935 * 125.64997 * 178.91825 * 5 4 2 7 7 H 1.08004 * 120.00323 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99690 * 0.02562 * 6 5 4 9 9 N 1.31613 * 120.00367 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47252 * 60.00065 * 10 8 6 12 12 H 1.48505 * 109.47429 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47393 * 300.00360 * 10 8 6 14 14 C 1.47428 * 108.70042 * 358.94227 * 5 4 2 15 15 C 1.54899 * 104.83362 * 24.12702 * 14 5 4 16 16 H 1.09005 * 111.03945 * 81.08162 * 15 14 5 17 17 C 1.52999 * 111.00266 * 204.91500 * 15 14 5 18 18 N 1.46502 * 109.47290 * 287.19600 * 17 15 14 19 19 C 1.34774 * 120.00299 * 180.02562 * 18 17 15 20 20 O 1.21683 * 119.99916 * 0.02562 * 19 18 17 21 21 C 1.46768 * 120.00297 * 180.02562 * 19 18 17 22 22 C 1.36058 * 125.65574 * 180.02562 * 21 19 18 23 23 C 1.41735 * 106.62494 * 180.02562 * 22 21 19 24 24 C 1.47493 * 126.77151 * 179.74015 * 23 22 21 25 25 N 1.34779 * 119.99876 * 180.02562 * 24 23 22 26 26 O 1.21598 * 119.99988 * 359.97438 * 24 23 22 27 27 C 1.37809 * 106.45110 * 0.02562 * 23 22 21 28 28 O 1.33495 * 108.34264 * 359.97438 * 27 23 22 29 29 H 1.08996 * 109.47056 * 296.85867 * 1 2 3 30 30 H 1.09003 * 109.46899 * 56.86103 * 1 2 3 31 31 H 1.08999 * 109.46884 * 176.86056 * 1 2 3 32 32 H 1.09004 * 109.87970 * 338.86490 * 4 2 1 33 33 H 1.09003 * 109.88046 * 99.87306 * 4 2 1 34 34 H 0.97007 * 120.00648 * 180.02562 * 9 8 6 35 35 H 1.08999 * 110.36490 * 265.28143 * 14 5 4 36 36 H 1.09007 * 110.36507 * 142.96950 * 14 5 4 37 37 H 1.08999 * 109.47077 * 167.19969 * 17 15 14 38 38 H 1.08994 * 109.47673 * 47.19621 * 17 15 14 39 39 H 0.97003 * 119.99985 * 359.97438 * 18 17 15 40 40 H 1.07997 * 126.68990 * 0.02562 * 22 21 19 41 41 H 0.96999 * 119.99982 * 359.97438 * 25 24 23 42 42 H 0.96990 * 119.99888 * 180.02562 * 25 24 23 43 43 H 1.07999 * 125.82433 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7933 -1.2059 5 7 3.2446 -1.5520 -0.7363 6 6 4.0037 -2.4003 -1.4973 7 1 4.8457 -2.9136 -1.0569 8 6 3.6909 -2.6006 -2.8348 9 7 2.6651 -1.9748 -3.3717 10 14 4.7269 -3.7574 -3.8732 11 1 4.6846 -5.1211 -3.2868 12 1 4.1893 -3.7962 -5.2570 13 1 6.1308 -3.2741 -3.9015 14 6 3.4632 -1.2485 0.6897 15 6 2.0790 -0.7933 1.2151 16 1 1.4448 -1.6507 1.4407 17 6 2.2278 0.1122 2.4393 18 7 2.6328 -0.6918 3.5951 19 6 2.8250 -0.1025 4.7919 20 8 2.6616 1.0972 4.9126 21 6 3.2313 -0.9079 5.9497 22 6 3.4556 -0.4347 7.2055 23 6 3.8251 -1.5496 7.9988 24 6 4.1718 -1.5370 9.4324 25 7 4.5056 -2.6848 10.0551 26 8 4.1574 -0.4909 10.0522 27 6 3.8029 -2.6465 7.1650 28 8 3.4451 -2.2396 5.9449 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3129 -1.4785 -1.5750 33 1 2.3716 -0.1059 -1.9986 34 1 2.4463 -2.1150 -4.3063 35 1 4.1932 -0.4465 0.7992 36 1 3.7960 -2.1405 1.2206 37 1 1.2748 0.5974 2.6503 38 1 2.9854 0.8703 2.2407 39 1 2.7620 -1.6484 3.4992 40 1 3.3690 0.5905 7.5338 41 1 4.5174 -3.5191 9.5605 42 1 4.7332 -2.6766 10.9979 43 1 4.0353 -3.6620 7.4500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092958285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:03 Heat of formation + Delta-G solvation = -41.333471 kcal Electronic energy + Delta-G solvation = -26246.151030 eV Core-core repulsion = 22293.442561 eV Total energy + Delta-G solvation = -3952.708469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.21956 -39.72879 -39.47543 -38.02480 -34.89921 -34.31937 -33.35845 -32.97587 -30.80572 -30.70218 -29.11910 -26.08368 -25.32249 -24.45358 -23.68200 -22.38279 -21.31795 -20.36688 -20.05514 -19.49947 -18.83163 -17.49293 -16.91282 -16.89498 -16.68102 -16.36155 -16.04083 -15.30976 -14.97336 -14.80544 -14.47166 -14.17588 -13.85823 -13.70473 -13.48410 -13.24005 -13.12247 -12.92427 -12.54479 -11.87766 -11.72587 -11.43208 -11.24537 -10.83862 -10.80288 -10.66543 -10.55480 -10.47828 -10.21395 -10.15460 -10.04754 -9.94453 -9.77893 -9.59786 -9.32875 -9.01034 -8.62119 -6.85509 -5.73166 -3.06880 0.56960 1.19273 2.16850 2.81015 2.86286 3.03763 3.17055 3.38325 3.42749 3.44084 4.03249 4.19064 4.46795 4.53007 4.99253 5.05213 5.12789 5.16004 5.26795 5.30476 5.49965 5.53446 5.71265 5.75338 5.81345 5.98158 6.03287 6.14419 6.19329 6.24119 6.27005 6.32878 6.46064 6.54052 6.60128 6.72183 6.80390 6.90771 7.34126 7.54255 7.61997 7.77366 7.81702 7.93768 8.24015 9.19996 9.80297 10.46359 11.38312 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002431 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.558053 B =11515.689454 C =12703.516283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.130 3.870 18 N -0.710 5.710 19 C 0.599 3.401 20 O -0.519 6.519 21 C -0.071 4.071 22 C -0.072 4.072 23 C -0.245 4.245 24 C 0.594 3.406 25 N -0.851 5.851 26 O -0.534 6.534 27 C 0.045 3.955 28 O -0.147 6.147 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.020 0.980 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.407 0.593 40 H 0.171 0.829 41 H 0.400 0.600 42 H 0.408 0.592 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -3.611 22.138 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.100 0.900 17 C 0.008 3.992 18 N -0.360 5.360 19 C 0.384 3.616 20 O -0.396 6.396 21 C -0.122 4.122 22 C -0.093 4.093 23 C -0.250 4.250 24 C 0.380 3.620 25 N -0.415 5.415 26 O -0.411 6.411 27 C -0.029 4.029 28 O -0.040 6.040 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.242 0.758 40 H 0.189 0.811 41 H 0.228 0.772 42 H 0.239 0.761 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.729 -2.209 21.885 22.008 hybrid contribution 0.801 -1.609 -0.339 1.829 sum 0.072 -3.818 21.546 21.882 Atomic orbital electron populations 1.21702 0.95259 1.01651 1.00616 1.22447 0.95201 0.99152 0.96203 0.91317 1.21220 0.89085 0.93081 0.90716 1.44451 1.32630 1.51440 1.04713 1.18997 1.07673 1.17748 0.91378 0.90560 1.24802 0.98418 1.00314 0.96899 1.69946 1.28745 1.45448 1.12741 0.86204 0.79509 0.80485 0.79567 1.21203 1.21594 1.21188 1.21593 0.92944 0.97081 0.86903 1.22689 0.99566 0.98086 0.92992 0.90019 1.21537 1.00540 0.93813 0.83360 1.46000 1.68405 1.12705 1.08873 1.16514 0.77951 0.86108 0.81057 1.90907 1.52124 1.12899 1.83702 1.22141 1.12182 0.80579 0.97305 1.21853 0.96655 1.00649 0.90113 1.20625 1.14365 0.94472 0.95520 1.17227 0.75827 0.83719 0.85252 1.43654 1.73067 1.09721 1.15102 1.90865 1.52396 1.31065 1.66734 1.25045 0.96983 0.99521 0.81301 1.83970 1.64874 1.23540 1.31614 0.93628 0.92712 0.92698 0.93290 0.94001 0.93682 0.96271 0.94605 0.91074 0.90818 0.75785 0.81109 0.77212 0.76083 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.16 37.16 0.34 -1.68 16 2 C -0.11 -1.93 3.02 -88.79 -0.27 -2.20 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 4 C 0.18 4.30 4.97 -3.07 -0.02 4.29 16 5 N -0.61 -15.04 3.39 -170.07 -0.58 -15.62 16 6 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.01 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -26.69 10.31 55.49 0.57 -26.11 16 10 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.75 6.65 -2.53 -0.02 2.73 16 15 C -0.11 -1.80 2.50 -88.48 -0.22 -2.02 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 17 C 0.13 1.79 5.13 -4.04 -0.02 1.77 16 18 N -0.71 -8.83 5.50 -61.59 -0.34 -9.17 16 19 C 0.60 8.07 7.79 -12.81 -0.10 7.97 16 20 O -0.52 -8.60 16.85 5.20 0.09 -8.51 16 21 C -0.07 -0.80 7.09 -36.92 -0.26 -1.06 16 22 C -0.07 -0.80 10.41 -39.03 -0.41 -1.21 16 23 C -0.25 -2.15 6.16 -104.95 -0.65 -2.79 16 24 C 0.59 5.37 8.09 -12.49 -0.10 5.27 16 25 N -0.85 -3.40 8.86 30.45 0.27 -3.13 16 26 O -0.53 -7.30 17.77 5.28 0.09 -7.20 16 27 C 0.05 0.26 11.64 30.58 0.36 0.62 16 28 O -0.15 -1.29 10.32 6.20 0.06 -1.23 16 29 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 32 H 0.05 1.27 7.01 -51.93 -0.36 0.91 16 33 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 35 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 36 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 39 H 0.41 4.43 8.21 -40.82 -0.34 4.10 16 40 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.40 0.20 7.78 -40.82 -0.32 -0.12 16 42 H 0.41 1.22 8.93 -40.82 -0.36 0.86 16 43 H 0.22 0.07 7.46 -52.49 -0.39 -0.32 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -36.00 365.85 -6.85 -42.85 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.90 Total: 0.91 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.61 Total: 4.93 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.07 Total: -54.03 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.25 Total: -16.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.00 -6.85 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092958285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.513 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds