Wall clock time and date at job start Tue Mar 31 2020 12:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.63948 * 2 1 4 4 C 1.54325 * 110.72088 * 236.66224 * 2 1 3 5 5 N 1.47018 * 107.27131 * 219.44268 * 4 2 1 6 6 C 1.36935 * 125.64997 * 178.91825 * 5 4 2 7 7 H 1.08004 * 120.00323 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99690 * 0.02562 * 6 5 4 9 9 N 1.31613 * 120.00367 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47252 * 60.00065 * 10 8 6 12 12 H 1.48505 * 109.47429 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47393 * 300.00360 * 10 8 6 14 14 C 1.47428 * 108.70042 * 358.94227 * 5 4 2 15 15 C 1.54899 * 104.83362 * 24.12702 * 14 5 4 16 16 H 1.09005 * 111.03945 * 81.08162 * 15 14 5 17 17 C 1.52999 * 111.00266 * 204.91500 * 15 14 5 18 18 N 1.46502 * 109.47290 * 287.19600 * 17 15 14 19 19 C 1.34774 * 120.00299 * 180.02562 * 18 17 15 20 20 O 1.21683 * 119.99916 * 0.02562 * 19 18 17 21 21 C 1.46768 * 120.00297 * 180.02562 * 19 18 17 22 22 C 1.36058 * 125.65574 * 180.02562 * 21 19 18 23 23 C 1.41735 * 106.62494 * 180.02562 * 22 21 19 24 24 C 1.47493 * 126.77151 * 179.74015 * 23 22 21 25 25 N 1.34779 * 119.99876 * 180.02562 * 24 23 22 26 26 O 1.21598 * 119.99988 * 359.97438 * 24 23 22 27 27 C 1.37809 * 106.45110 * 0.02562 * 23 22 21 28 28 O 1.33495 * 108.34264 * 359.97438 * 27 23 22 29 29 H 1.08996 * 109.47056 * 296.85867 * 1 2 3 30 30 H 1.09003 * 109.46899 * 56.86103 * 1 2 3 31 31 H 1.08999 * 109.46884 * 176.86056 * 1 2 3 32 32 H 1.09004 * 109.87970 * 338.86490 * 4 2 1 33 33 H 1.09003 * 109.88046 * 99.87306 * 4 2 1 34 34 H 0.97007 * 120.00648 * 180.02562 * 9 8 6 35 35 H 1.08999 * 110.36490 * 265.28143 * 14 5 4 36 36 H 1.09007 * 110.36507 * 142.96950 * 14 5 4 37 37 H 1.08999 * 109.47077 * 167.19969 * 17 15 14 38 38 H 1.08994 * 109.47673 * 47.19621 * 17 15 14 39 39 H 0.97003 * 119.99985 * 359.97438 * 18 17 15 40 40 H 1.07997 * 126.68990 * 0.02562 * 22 21 19 41 41 H 0.96999 * 119.99982 * 359.97438 * 25 24 23 42 42 H 0.96990 * 119.99888 * 180.02562 * 25 24 23 43 43 H 1.07999 * 125.82433 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7933 -1.2059 5 7 3.2446 -1.5520 -0.7363 6 6 4.0037 -2.4003 -1.4973 7 1 4.8457 -2.9136 -1.0569 8 6 3.6909 -2.6006 -2.8348 9 7 2.6651 -1.9748 -3.3717 10 14 4.7269 -3.7574 -3.8732 11 1 4.6846 -5.1211 -3.2868 12 1 4.1893 -3.7962 -5.2570 13 1 6.1308 -3.2741 -3.9015 14 6 3.4632 -1.2485 0.6897 15 6 2.0790 -0.7933 1.2151 16 1 1.4448 -1.6507 1.4407 17 6 2.2278 0.1122 2.4393 18 7 2.6328 -0.6918 3.5951 19 6 2.8250 -0.1025 4.7919 20 8 2.6616 1.0972 4.9126 21 6 3.2313 -0.9079 5.9497 22 6 3.4556 -0.4347 7.2055 23 6 3.8251 -1.5496 7.9988 24 6 4.1718 -1.5370 9.4324 25 7 4.5056 -2.6848 10.0551 26 8 4.1574 -0.4909 10.0522 27 6 3.8029 -2.6465 7.1650 28 8 3.4451 -2.2396 5.9449 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3129 -1.4785 -1.5750 33 1 2.3716 -0.1059 -1.9986 34 1 2.4463 -2.1150 -4.3063 35 1 4.1932 -0.4465 0.7992 36 1 3.7960 -2.1405 1.2206 37 1 1.2748 0.5974 2.6503 38 1 2.9854 0.8703 2.2407 39 1 2.7620 -1.6484 3.4992 40 1 3.3690 0.5905 7.5338 41 1 4.5174 -3.5191 9.5605 42 1 4.7332 -2.6766 10.9979 43 1 4.0353 -3.6620 7.4500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092958285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:02 Heat of formation + Delta-G solvation = -70.553776 kcal Electronic energy + Delta-G solvation = -26247.418117 eV Core-core repulsion = 22293.442561 eV Total energy + Delta-G solvation = -3953.975556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92200 -40.79904 -40.21630 -39.52946 -36.19628 -34.98631 -34.70435 -34.01316 -32.53177 -31.70916 -30.35224 -27.85110 -26.76656 -25.10832 -24.96913 -23.66422 -22.12022 -21.64092 -21.35762 -20.60748 -19.79474 -18.79214 -18.07295 -17.65694 -17.45174 -17.26522 -17.06320 -16.66170 -16.28903 -15.86872 -15.64026 -15.55097 -15.16848 -14.72804 -14.66873 -14.42156 -14.29413 -14.12584 -13.73694 -13.41890 -13.28824 -13.09842 -12.85044 -12.63889 -12.42921 -11.98278 -11.84290 -11.69307 -11.53115 -11.41163 -11.37212 -11.24262 -11.17467 -10.73451 -10.67982 -10.31076 -9.82166 -8.87735 -7.82871 -5.18459 -0.11795 0.43591 1.44525 1.46610 1.49778 1.55993 1.93538 2.04519 2.27648 2.50764 2.53795 3.34806 3.43769 3.53868 3.61165 3.77247 3.91528 3.94435 3.96807 4.28849 4.37027 4.44901 4.51334 4.61019 4.71804 4.75580 4.81494 4.86006 4.94869 4.98073 5.09155 5.13877 5.26363 5.37819 5.46434 5.48909 5.55057 5.73738 5.83719 5.85352 6.22141 6.36591 6.42200 6.94562 7.12317 7.28253 7.80220 8.44665 9.27080 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002431 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.558053 B =11515.689454 C =12703.516283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.075 0.925 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.242 4.242 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.136 3.864 15 C -0.090 4.090 16 H 0.092 0.908 17 C 0.142 3.858 18 N -0.702 5.702 19 C 0.601 3.399 20 O -0.559 6.559 21 C -0.090 4.090 22 C -0.082 4.082 23 C -0.271 4.271 24 C 0.593 3.407 25 N -0.823 5.823 26 O -0.593 6.593 27 C 0.096 3.904 28 O -0.146 6.146 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.017 0.983 33 H -0.001 1.001 34 H 0.246 0.754 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.151 0.849 41 H 0.420 0.580 42 H 0.416 0.584 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -6.149 24.124 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.094 0.906 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.205 1.205 14 C 0.011 3.989 15 C -0.110 4.110 16 H 0.110 0.890 17 C 0.018 3.982 18 N -0.352 5.352 19 C 0.387 3.613 20 O -0.439 6.439 21 C -0.141 4.141 22 C -0.103 4.103 23 C -0.276 4.276 24 C 0.379 3.621 25 N -0.388 5.388 26 O -0.475 6.475 27 C 0.022 3.978 28 O -0.039 6.039 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.017 0.983 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.169 0.831 41 H 0.253 0.747 42 H 0.248 0.752 43 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -0.267 -4.827 23.902 24.386 hybrid contribution 0.738 -0.913 -0.871 1.462 sum 0.471 -5.740 23.031 23.741 Atomic orbital electron populations 1.21650 0.92951 1.01710 1.02233 1.22321 0.97016 0.98625 0.94145 0.90624 1.20979 0.88116 0.91951 0.92288 1.44789 1.32684 1.51146 1.06926 1.19427 1.07945 1.17718 0.91999 0.89885 1.25658 0.99859 1.02312 0.98267 1.70182 1.30402 1.47009 1.12421 0.85166 0.77945 0.78909 0.77387 1.19966 1.22280 1.20545 1.21782 0.95067 0.97581 0.84449 1.22473 0.97139 0.98372 0.92998 0.88986 1.21309 1.00980 0.93102 0.82782 1.45847 1.68075 1.13027 1.08246 1.16690 0.77177 0.85824 0.81574 1.90881 1.53947 1.14669 1.84432 1.21514 1.14623 0.81690 0.96271 1.21886 0.96640 1.00860 0.90954 1.20632 1.16415 0.94715 0.95842 1.17337 0.75463 0.84043 0.85274 1.43418 1.70679 1.09138 1.15531 1.90841 1.55403 1.33408 1.67853 1.26184 0.91669 1.00789 0.79126 1.83988 1.64959 1.22017 1.32912 0.90485 0.92799 0.93244 0.96513 0.98307 0.94490 0.96458 0.93261 0.89903 0.91684 0.74661 0.83083 0.74746 0.75166 0.70281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.16 71.98 0.66 -3.00 16 2 C -0.10 -3.49 3.02 -9.61 -0.03 -3.52 16 3 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 4 C 0.19 9.27 4.97 86.73 0.43 9.70 16 5 N -0.63 -31.59 3.39 -691.99 -2.35 -33.94 16 6 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 7 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 8 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 9 N -0.95 -57.04 10.31 21.65 0.22 -56.82 16 10 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.14 5.17 6.65 86.85 0.58 5.75 16 15 C -0.09 -2.71 2.50 -9.41 -0.02 -2.74 16 16 H 0.09 2.64 8.05 -2.38 -0.02 2.62 16 17 C 0.14 3.64 5.13 86.38 0.44 4.08 16 18 N -0.70 -16.17 5.50 -467.00 -2.57 -18.74 16 19 C 0.60 15.73 7.79 86.47 0.67 16.40 16 20 O -0.56 -18.67 16.85 -4.29 -0.07 -18.74 16 21 C -0.09 -1.92 7.09 23.99 0.17 -1.75 16 22 C -0.08 -1.83 10.41 22.63 0.24 -1.59 16 23 C -0.27 -4.17 6.16 -20.08 -0.12 -4.30 16 24 C 0.59 9.78 8.09 86.68 0.70 10.48 16 25 N -0.82 -3.89 8.86 -175.84 -1.56 -5.45 16 26 O -0.59 -16.45 17.77 -4.03 -0.07 -16.52 16 27 C 0.10 0.67 11.64 67.72 0.79 1.46 16 28 O -0.15 -2.07 10.32 -0.73 -0.01 -2.08 16 29 H 0.08 1.74 8.10 -2.39 -0.02 1.73 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 32 H 0.02 0.90 7.01 -2.38 -0.02 0.89 16 33 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 34 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 35 H 0.02 0.68 7.91 -2.39 -0.02 0.66 16 36 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 39 H 0.42 8.00 8.21 -92.71 -0.76 7.24 16 40 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.42 -1.66 7.78 -92.71 -0.72 -2.38 16 42 H 0.42 1.33 8.93 -92.72 -0.83 0.50 16 43 H 0.28 -1.91 7.46 -2.91 -0.02 -1.93 16 Total: -1.00 -84.43 365.85 0.22 -84.21 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -1.24 Total: 5.67 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.83 Total: 15.13 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -6.25 Total: -114.95 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.15 Total: -37.33 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -84.43 0.22 -84.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092958285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.659 kcal (2) G-P(sol) polarization free energy of solvation -84.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds