Wall clock time and date at job start Tue Mar 31 2020 13:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47349 * 2 1 4 4 C 1.35888 * 119.60026 * 270.27591 * 3 2 1 5 5 C 1.35990 * 120.58400 * 180.23370 * 4 3 2 6 6 N 1.40101 * 120.09281 * 179.76308 * 5 4 3 7 7 C 1.34780 * 120.00225 * 239.43430 * 6 5 4 8 8 O 1.21401 * 119.99632 * 355.03041 * 7 6 5 9 9 C 1.49313 * 120.00413 * 175.03488 * 7 6 5 10 10 O 1.21372 * 119.99812 * 5.97203 * 9 7 6 11 11 N 1.34776 * 120.00477 * 185.97760 * 9 7 6 12 12 C 1.46500 * 119.99468 * 356.51283 * 11 9 7 13 13 C 1.46493 * 120.00264 * 176.51390 * 11 9 7 14 14 H 1.09004 * 109.47468 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47549 * 120.00169 * 13 11 9 16 16 C 1.50702 * 109.47197 * 240.00185 * 13 11 9 17 17 H 1.08004 * 120.00191 * 359.97438 * 16 13 11 18 18 C 1.37880 * 120.00462 * 179.97438 * 16 13 11 19 19 N 1.31511 * 119.99567 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00287 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47124 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47242 * 300.00201 * 20 18 16 23 23 H 1.48502 * 109.47068 * 59.99971 * 20 18 16 24 24 C 1.40693 * 119.81185 * 359.49752 * 5 4 3 25 25 C 1.36325 * 119.23006 * 0.24338 * 24 5 4 26 26 C 1.34626 * 119.59821 * 89.99808 * 3 2 1 27 27 O 1.22082 * 119.91992 * 0.04859 * 26 3 2 28 28 H 1.09002 * 109.47081 * 299.99791 * 1 2 3 29 29 H 1.08997 * 109.47242 * 60.00179 * 1 2 3 30 30 H 1.08998 * 109.47122 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47081 * 240.00209 * 2 1 3 32 32 H 1.09000 * 109.47108 * 120.00574 * 2 1 3 33 33 H 1.08002 * 119.71224 * 359.97438 * 4 3 2 34 34 H 0.96997 * 120.00509 * 59.43869 * 6 5 4 35 35 H 1.09002 * 109.47224 * 275.95391 * 12 11 9 36 36 H 1.08999 * 109.47420 * 35.96143 * 12 11 9 37 37 H 1.09005 * 109.46724 * 155.95768 * 12 11 9 38 38 H 1.08994 * 109.47323 * 180.02562 * 15 13 11 39 39 H 1.09010 * 109.46564 * 299.99863 * 15 13 11 40 40 H 1.08994 * 109.47009 * 59.99813 * 15 13 11 41 41 H 0.97000 * 120.00081 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.38333 * 180.27473 * 24 5 4 43 43 H 1.07998 * 120.29661 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2368 2.0159 -1.1815 5 6 2.6945 3.2963 -1.2049 6 7 2.9208 3.9392 -2.4290 7 6 4.1513 4.3981 -2.7318 8 8 5.0418 4.3358 -1.9090 9 6 4.4194 4.9832 -4.0791 10 8 3.5068 5.1455 -4.8627 11 7 5.6746 5.3312 -4.4252 12 6 6.7635 5.2067 -3.4530 13 6 5.9501 5.8338 -5.7733 14 1 5.0249 5.8553 -6.3493 15 6 6.5277 7.2476 -5.6825 16 6 6.9438 4.9279 -6.4539 17 1 7.3317 4.0644 -5.9339 18 6 7.3578 5.2015 -7.7403 19 7 6.8851 6.2527 -8.3736 20 14 8.5900 4.0790 -8.5835 21 1 8.8692 4.5884 -9.9501 22 1 9.8508 4.0502 -7.7993 23 1 8.0301 2.7064 -8.6710 24 6 2.9347 3.9754 0.0036 25 6 2.7081 3.3331 1.1846 26 6 2.2400 2.0081 1.1706 27 8 2.0344 1.4240 2.2227 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0492 1.4976 -2.1103 34 1 2.1919 4.0540 -3.0586 35 1 6.7882 6.0935 -2.8197 36 1 6.6001 4.3235 -2.8355 37 1 7.7124 5.1106 -3.9808 38 1 6.7323 7.6217 -6.6856 39 1 5.8089 7.9028 -5.1903 40 1 7.4530 7.2257 -5.1068 41 1 7.1760 6.4449 -9.2787 42 1 3.2940 4.9938 -0.0042 43 1 2.8863 3.8382 2.1224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116710007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:37 Heat of formation + Delta-G solvation = -48.349110 kcal Electronic energy + Delta-G solvation = -26959.714478 eV Core-core repulsion = 23006.701789 eV Total energy + Delta-G solvation = -3953.012690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74667 -40.42626 -38.37307 -37.14373 -36.11290 -35.50762 -33.86544 -32.79666 -31.18909 -29.61756 -29.15358 -26.31415 -25.35568 -25.18305 -24.73716 -23.50643 -22.28218 -20.81459 -19.50393 -18.16936 -17.82809 -17.21089 -16.97037 -16.42630 -16.24856 -15.94074 -15.66673 -15.26786 -15.04055 -14.62573 -14.41677 -14.29476 -13.68411 -13.41481 -13.32873 -13.17934 -12.69234 -12.57274 -12.48857 -12.41587 -11.94880 -11.88253 -11.67407 -11.60984 -11.15403 -10.92636 -10.82092 -10.69743 -10.49024 -10.34841 -10.24959 -10.17800 -9.70714 -9.28816 -8.91466 -8.51491 -8.04869 -7.79279 -6.16641 -4.25446 0.54011 1.40796 1.82052 2.18697 2.78646 3.23570 3.28719 3.30627 3.36356 3.62861 3.95411 4.23696 4.30294 4.33965 4.62657 4.64710 4.68553 4.78975 4.87408 4.96890 5.15111 5.23060 5.36716 5.52854 5.67246 5.75690 5.83759 6.01098 6.09406 6.17418 6.35805 6.59679 6.66674 6.71045 6.76929 6.91753 7.02726 7.21434 7.34709 7.60500 7.75878 7.82490 7.95900 8.04230 8.29727 8.54320 8.79942 9.40964 10.88758 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.002713 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.741280 B =10318.376836 C =10737.799065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.489 5.489 4 C 0.124 3.876 5 C 0.039 3.961 6 N -0.651 5.651 7 C 0.512 3.488 8 O -0.502 6.502 9 C 0.493 3.507 10 O -0.538 6.538 11 N -0.550 5.550 12 C 0.069 3.931 13 C 0.255 3.745 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.901 3.099 21 H -0.285 1.285 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.000 4.000 25 C -0.234 4.234 26 C 0.514 3.486 27 O -0.554 6.554 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.421 0.579 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.013 0.987 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.139 0.861 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 -7.840 13.596 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.200 5.200 4 C -0.006 4.006 5 C -0.059 4.059 6 N -0.303 5.303 7 C 0.295 3.705 8 O -0.376 6.376 9 C 0.274 3.726 10 O -0.417 6.417 11 N -0.280 5.280 12 C -0.074 4.074 13 C 0.156 3.844 14 H 0.084 0.916 15 C -0.205 4.205 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.729 3.271 21 H -0.211 1.211 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.023 4.023 25 C -0.256 4.256 26 C 0.316 3.684 27 O -0.437 6.437 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.184 0.816 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.157 0.843 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.111 -8.093 14.216 19.231 hybrid contribution 0.467 -0.396 -0.927 1.111 sum -9.644 -8.490 13.289 18.485 Atomic orbital electron populations 1.22126 0.94063 1.03341 1.03061 1.22005 0.95913 0.80287 1.05206 1.45426 1.53804 1.14611 1.06178 1.21856 0.96526 0.91931 0.90250 1.16626 1.10815 0.91845 0.86570 1.42934 1.11830 1.58034 1.17519 1.20992 0.82042 0.78180 0.89279 1.90686 1.42860 1.54059 1.49962 1.19583 0.84859 0.81653 0.86503 1.90724 1.43418 1.55588 1.51971 1.48281 1.05699 1.58260 1.15777 1.22180 0.91099 1.02329 0.91815 1.19168 0.98140 0.91482 0.75634 0.91556 1.22090 0.97980 0.97004 1.03449 1.21248 1.25723 1.10729 0.99261 0.92032 1.24880 0.96418 0.95397 0.96903 1.69861 1.43404 1.26348 1.12781 0.86504 0.81310 0.80769 0.78532 1.21100 1.20108 1.20176 1.21557 0.89882 1.00046 0.90782 1.22009 1.09268 0.94642 0.99713 1.17165 0.80305 0.88231 0.82712 1.90955 1.55281 1.67911 1.29543 0.91602 0.91973 0.90478 0.88902 0.87928 0.81564 0.74031 0.93434 0.89298 0.90463 0.88525 0.96782 0.94809 0.92459 0.84317 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.09 0.61 6.05 -4.04 -0.02 0.58 16 3 N -0.49 -4.64 2.59 -119.56 -0.31 -4.95 16 4 C 0.12 1.06 10.20 -16.56 -0.17 0.89 16 5 C 0.04 0.41 5.72 -83.96 -0.48 -0.07 16 6 N -0.65 -7.70 5.27 -10.46 -0.06 -7.76 16 7 C 0.51 7.99 7.63 -11.65 -0.09 7.90 16 8 O -0.50 -8.34 12.39 5.45 0.07 -8.27 16 9 C 0.49 9.60 7.73 -11.65 -0.09 9.51 16 10 O -0.54 -11.54 15.82 5.48 0.09 -11.46 16 11 N -0.55 -11.54 2.75 -175.82 -0.48 -12.03 16 12 C 0.07 1.25 8.48 59.85 0.51 1.75 16 13 C 0.26 6.26 2.62 -69.09 -0.18 6.07 16 14 H 0.07 1.84 6.90 -51.93 -0.36 1.48 16 15 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 16 C -0.53 -13.84 7.95 -34.44 -0.27 -14.12 16 17 H 0.06 1.58 7.43 -52.48 -0.39 1.19 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 20 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.00 0.00 8.98 -39.34 -0.35 -0.35 16 25 C -0.23 -2.60 9.98 -39.41 -0.39 -3.00 16 26 C 0.51 6.34 7.40 -15.46 -0.11 6.23 16 27 O -0.55 -8.49 16.63 4.84 0.08 -8.41 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.42 8.02 -51.93 -0.42 0.00 16 32 H 0.10 0.83 7.38 -51.93 -0.38 0.45 16 33 H 0.17 0.95 8.04 -52.49 -0.42 0.53 16 34 H 0.42 4.37 8.31 -40.82 -0.34 4.03 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.55 5.36 -51.93 -0.28 1.27 16 37 H 0.08 1.45 7.12 -51.93 -0.37 1.08 16 38 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 39 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 40 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.14 1.46 8.02 -52.49 -0.42 1.03 16 43 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -32.08 362.29 -6.35 -38.43 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.76 Total: 3.75 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -1.04 Total: 13.38 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.22 Total: -48.24 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.23 Total: -28.14 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.08 -6.35 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116710007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.919 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds