Wall clock time and date at job start Tue Mar 31 2020 13:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.50700 * 109.46936 * 240.00323 * 2 1 3 5 5 H 1.08004 * 120.00184 * 239.99585 * 4 2 1 6 6 C 1.37881 * 119.99976 * 60.00259 * 4 2 1 7 7 N 1.31511 * 119.99965 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47107 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47196 * 299.99686 * 8 6 4 11 11 H 1.48499 * 109.47456 * 59.99377 * 8 6 4 12 12 N 1.46498 * 109.47571 * 120.00570 * 2 1 3 13 13 C 1.46502 * 119.99895 * 59.99301 * 12 2 1 14 14 C 1.34783 * 119.99946 * 240.00417 * 12 2 1 15 15 O 1.21352 * 119.99563 * 356.41376 * 14 12 2 16 16 C 1.49377 * 119.99895 * 176.41902 * 14 12 2 17 17 O 1.21362 * 120.00049 * 5.91063 * 16 14 12 18 18 N 1.34777 * 119.99724 * 185.91768 * 16 14 12 19 19 C 1.39361 * 119.99714 * 179.97438 * 18 16 14 20 20 N 1.31261 * 127.11546 * 0.02607 * 19 18 16 21 21 O 1.21436 * 111.55484 * 179.97438 * 20 19 18 22 22 C 1.33254 * 111.47803 * 359.95998 * 21 20 19 23 23 C 1.35301 * 106.58985 * 359.80475 * 22 21 20 24 24 C 1.50073 * 124.92742 * 180.02562 * 23 22 21 25 25 C 1.53546 * 108.23300 * 344.09268 * 24 23 22 26 26 C 1.53107 * 109.50405 * 49.20792 * 25 24 23 27 27 C 1.50590 * 129.61783 * 180.19868 * 22 21 20 28 28 H 1.09004 * 109.47496 * 299.99603 * 1 2 3 29 29 H 1.09001 * 109.47513 * 59.99711 * 1 2 3 30 30 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99711 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46851 * 95.99242 * 13 12 2 33 33 H 1.09002 * 109.47332 * 215.98474 * 13 12 2 34 34 H 1.08997 * 109.47251 * 335.98979 * 13 12 2 35 35 H 0.97003 * 120.00054 * 359.97438 * 18 16 14 36 36 H 1.09007 * 109.71162 * 103.77485 * 24 23 22 37 37 H 1.09003 * 109.71336 * 224.35970 * 24 23 22 38 38 H 1.09002 * 109.46220 * 169.21731 * 25 24 23 39 39 H 1.08996 * 109.46376 * 289.19865 * 25 24 23 40 40 H 1.09006 * 109.43004 * 50.23801 * 26 25 24 41 41 H 1.09002 * 109.43029 * 170.13559 * 26 25 24 42 42 H 1.08999 * 109.69442 * 282.93738 * 27 22 21 43 43 H 1.08991 * 109.69530 * 43.52609 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.8258 -0.4203 -5.2205 10 1 3.8062 -1.1207 -4.0083 11 1 1.8257 -2.5200 -4.0079 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4278 14 6 2.7932 -0.0357 2.0833 15 8 3.1400 1.1055 1.8596 16 6 3.2251 -0.7146 3.3418 17 8 2.9697 -1.8881 3.5167 18 7 3.8984 -0.0238 4.2832 19 6 4.3009 -0.6571 5.4575 20 7 4.1008 -1.9111 5.7899 21 8 4.5726 -2.1645 6.8798 22 6 5.1564 -1.0950 7.4194 23 6 5.0116 -0.0859 6.5298 24 6 5.5218 1.3118 6.7256 25 6 5.8552 1.4977 8.2129 26 6 6.7158 0.3263 8.6941 27 6 5.8648 -0.9519 8.7404 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.7087 1.1615 -3.4843 32 1 2.4673 -2.7353 1.0655 33 1 1.5197 -2.2599 2.4953 34 1 0.7429 -2.3282 0.8952 35 1 4.1028 0.9140 4.1432 36 1 6.4195 1.4629 6.1260 37 1 4.7560 2.0279 6.4275 38 1 6.4027 2.4304 8.3485 39 1 4.9316 1.5313 8.7906 40 1 7.5521 0.1855 8.0093 41 1 7.0968 0.5423 9.6922 42 1 5.1323 -0.8866 9.5449 43 1 6.5149 -1.8113 8.9037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120954710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:15 Heat of formation + Delta-G solvation = -14.907113 kcal Electronic energy + Delta-G solvation = -27184.718019 eV Core-core repulsion = 23233.155483 eV Total energy + Delta-G solvation = -3951.562536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.05074 -42.08075 -39.89652 -38.60722 -37.76045 -36.72063 -34.79808 -33.34480 -31.86055 -31.52813 -31.11896 -28.06020 -27.39039 -26.77305 -25.33791 -24.05812 -23.53574 -22.05697 -21.19552 -20.22756 -19.31574 -18.86791 -18.56316 -18.18912 -17.90781 -17.21873 -17.17036 -16.71005 -16.15286 -15.83022 -15.47469 -15.05388 -14.77718 -14.73641 -14.54745 -14.30226 -14.15206 -14.11363 -13.68289 -13.48971 -13.25801 -13.04399 -12.95748 -12.79501 -12.75065 -12.42314 -12.24152 -12.19960 -12.09640 -11.80266 -11.66418 -11.50686 -11.28656 -10.62641 -10.49684 -10.09713 -10.05201 -9.61232 -8.20653 -6.37203 -0.03107 0.50287 0.94380 1.20427 1.41010 1.42119 1.50311 2.04642 2.10324 2.28184 2.41794 2.99389 3.08046 3.26394 3.62426 3.77360 4.00071 4.03099 4.26910 4.31573 4.35560 4.49760 4.59596 4.61407 4.66880 4.81272 4.82468 4.89274 4.93476 4.95697 5.04506 5.10258 5.20281 5.21420 5.31882 5.32504 5.37540 5.48398 5.56740 5.66680 5.88224 6.04240 6.30342 6.48988 6.65538 6.85473 7.30484 7.33205 8.83914 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027925 B = 0.002667 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.443223 B =10494.328921 C =10791.178951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.259 3.741 3 H 0.028 0.972 4 C -0.547 4.547 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.965 3.035 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.266 1.266 12 N -0.558 5.558 13 C 0.078 3.922 14 C 0.494 3.506 15 O -0.557 6.557 16 C 0.510 3.490 17 O -0.485 6.485 18 N -0.599 5.599 19 C 0.229 3.771 20 N -0.394 5.394 21 O 0.100 5.900 22 C -0.011 4.011 23 C -0.220 4.220 24 C -0.050 4.050 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.037 4.037 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.441 0.559 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 0.079 25.348 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.158 3.842 3 H 0.046 0.954 4 C -0.585 4.585 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.191 1.191 12 N -0.288 5.288 13 C -0.064 4.064 14 C 0.276 3.724 15 O -0.437 6.437 16 C 0.291 3.709 17 O -0.356 6.356 18 N -0.254 5.254 19 C -0.018 4.018 20 N -0.109 5.109 21 O 0.039 5.961 22 C -0.075 4.075 23 C -0.225 4.225 24 C -0.088 4.088 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.074 4.074 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.283 0.717 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.668 -1.110 24.540 26.399 hybrid contribution 0.302 0.695 -1.446 1.633 sum 9.970 -0.415 23.094 25.157 Atomic orbital electron populations 1.21932 0.96247 1.00499 1.00731 1.18879 0.92232 0.92716 0.80327 0.95426 1.21455 1.32677 1.13328 0.91057 0.92565 1.25656 0.94850 0.95580 1.01726 1.69973 1.36670 1.23478 1.24835 0.85512 0.78449 0.78906 0.78188 1.20338 1.20278 1.19115 1.48256 1.45654 1.13582 1.21307 1.22206 1.01221 0.79552 1.03401 1.19860 0.81332 0.86478 0.84750 1.90695 1.56662 1.18655 1.77734 1.20486 0.78974 0.86816 0.84618 1.90737 1.51159 1.15609 1.78096 1.42209 1.53997 1.15484 1.13727 1.20296 1.00688 0.90858 0.89998 1.74845 1.21466 1.15668 0.98913 1.84778 1.53551 1.34831 1.22938 1.24881 0.97941 0.84925 0.99798 1.20714 1.07471 1.01371 0.92991 1.20157 1.01154 0.87805 0.99648 1.21685 1.01047 0.99863 0.92945 1.21728 0.97474 0.92082 1.03995 1.20641 0.98500 1.01390 0.86899 0.95457 0.90395 0.93443 0.92269 0.92995 0.88462 0.90395 0.71724 0.89528 0.90065 0.88890 0.91065 0.91302 0.87398 0.86616 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.54 8.96 71.98 0.64 -5.90 16 2 C 0.26 13.60 2.62 44.24 0.12 13.72 16 3 H 0.03 1.66 6.90 -2.39 -0.02 1.65 16 4 C -0.55 -30.26 8.37 25.60 0.21 -30.05 16 5 H 0.06 3.10 7.65 -2.91 -0.02 3.07 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -51.58 11.32 21.45 0.24 -51.33 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 N -0.56 -25.67 2.75 -828.47 -2.28 -27.96 16 13 C 0.08 3.11 8.75 127.77 1.12 4.23 16 14 C 0.49 21.73 7.73 87.25 0.67 22.41 16 15 O -0.56 -26.53 15.82 -3.25 -0.05 -26.58 16 16 C 0.51 19.50 7.74 87.25 0.67 20.18 16 17 O -0.49 -19.89 11.92 -3.28 -0.04 -19.93 16 18 N -0.60 -18.85 5.41 -310.02 -1.68 -20.53 16 19 C 0.23 6.83 7.89 133.68 1.05 7.88 16 20 N -0.39 -13.13 10.44 -55.63 -0.58 -13.72 16 21 O 0.10 2.64 11.19 78.13 0.87 3.51 16 22 C -0.01 -0.20 7.38 24.97 0.18 -0.01 16 23 C -0.22 -4.58 6.09 -20.12 -0.12 -4.70 16 24 C -0.05 -0.67 6.30 29.84 0.19 -0.48 16 25 C -0.12 -0.85 5.91 30.81 0.18 -0.67 16 26 C -0.12 -0.59 5.89 30.84 0.18 -0.41 16 27 C -0.04 -0.28 6.31 30.02 0.19 -0.09 16 28 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.08 4.10 6.07 -2.39 -0.01 4.08 16 30 H 0.05 2.12 6.67 -2.39 -0.02 2.10 16 31 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.10 3.70 5.36 -2.47 -0.01 3.69 16 34 H 0.08 2.97 6.44 -2.39 -0.02 2.96 16 35 H 0.44 11.88 8.31 -92.71 -0.77 11.11 16 36 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 40 H 0.07 0.44 8.12 -2.38 -0.02 0.42 16 41 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -72.02 352.04 4.55 -67.47 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.29 Total: 15.94 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 5.75 Total: 27.78 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.30 Total: -113.53 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: 0.78 Total: -43.00 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.02 4.55 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120954710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.562 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds