Wall clock time and date at job start Tue Mar 31 2020 12:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.87226 * 2 1 4 4 C 1.54325 * 109.88054 * 121.00844 * 2 1 3 5 5 H 1.08993 * 110.72326 * 215.58963 * 4 2 1 6 6 N 1.46501 * 110.71973 * 338.86742 * 4 2 1 7 7 C 1.36939 * 119.99402 * 199.97558 * 6 4 2 8 8 H 1.07995 * 120.00873 * 359.97438 * 7 6 4 9 9 C 1.38822 * 119.99744 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99435 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00136 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47508 * 60.00186 * 11 9 7 13 13 H 1.48499 * 109.47052 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47004 * 299.99899 * 11 9 7 15 15 C 1.55157 * 102.94374 * 97.22671 * 4 2 1 16 16 C 1.54918 * 101.58155 * 35.49936 * 15 4 2 17 17 N 1.47015 * 109.88489 * 238.81643 * 2 1 3 18 18 C 1.34778 * 125.64845 * 59.57176 * 17 2 1 19 19 O 1.21282 * 119.99788 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00112 * 179.97438 * 18 17 2 21 21 N 1.46501 * 109.46993 * 179.97438 * 20 18 17 22 22 C 1.34775 * 120.00133 * 179.97438 * 21 20 18 23 23 O 1.21619 * 119.99695 * 0.02562 * 22 21 20 24 24 C 1.47380 * 120.00362 * 180.02562 * 22 21 20 25 25 C 1.47017 * 127.19342 * 179.97438 * 24 22 21 26 26 C 1.34177 * 105.95513 * 179.97438 * 25 24 22 27 27 O 1.34212 * 109.12301 * 0.02562 * 26 25 24 28 28 C 1.33662 * 110.90960 * 359.71952 * 27 26 25 29 29 H 1.08999 * 109.47715 * 298.98763 * 1 2 3 30 30 H 1.08999 * 109.46866 * 58.99475 * 1 2 3 31 31 H 1.09004 * 109.47034 * 178.98588 * 1 2 3 32 32 H 0.96995 * 120.00198 * 19.96665 * 6 4 2 33 33 H 0.97006 * 119.99177 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00846 * 153.57645 * 15 4 2 35 35 H 1.09000 * 111.00346 * 277.43176 * 15 4 2 36 36 H 1.08999 * 110.35942 * 81.82689 * 16 15 4 37 37 H 1.08996 * 110.36556 * 204.15522 * 16 15 4 38 38 H 1.08999 * 109.47065 * 299.99680 * 20 18 17 39 39 H 1.09003 * 109.46764 * 60.00206 * 20 18 17 40 40 H 0.96998 * 120.00099 * 0.02562 * 21 20 18 41 41 H 1.08005 * 127.02326 * 0.02562 * 25 24 22 42 42 H 1.07992 * 125.44072 * 179.97438 * 26 25 24 43 43 H 1.07999 * 125.80201 * 180.29467 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7476 1.2439 5 1 2.9655 -0.2808 1.6188 6 7 1.0291 -0.7992 2.2887 7 6 1.3876 -1.0364 3.5888 8 1 2.4263 -1.1857 3.8441 9 6 0.4158 -1.0847 4.5790 10 7 -0.8502 -0.9032 4.2679 11 14 0.9048 -1.4074 6.3527 12 1 1.8323 -0.3426 6.8121 13 1 -0.3090 -1.4103 7.2081 14 1 1.5799 -2.7268 6.4478 15 6 2.3518 -2.1684 0.6957 16 6 2.8568 -1.8509 -0.7340 17 7 2.0300 -0.7158 -1.1827 18 6 1.7756 -0.3881 -2.4651 19 8 1.0796 0.5722 -2.7188 20 6 2.3568 -1.2141 -3.5835 21 7 1.9360 -0.6571 -4.8715 22 6 2.3388 -1.2361 -6.0200 23 8 3.0512 -2.2212 -5.9871 24 6 1.9159 -0.6755 -7.3158 25 6 2.2595 -1.1752 -8.6550 26 6 1.6518 -0.3521 -9.5230 27 8 0.9806 0.5887 -8.8406 28 6 1.1192 0.4123 -7.5229 29 1 -0.3634 0.4980 0.8989 30 1 -0.3633 0.5294 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 0.0962 -0.6653 2.0595 33 1 -1.5292 -0.9374 4.9598 34 1 3.1270 -2.6600 1.2837 35 1 1.4452 -2.7726 0.6646 36 1 3.9091 -1.5677 -0.7103 37 1 2.7088 -2.7101 -1.3881 38 1 3.4447 -1.1991 -3.5188 39 1 2.0018 -2.2413 -3.4989 40 1 1.3680 0.1287 -4.8978 41 1 2.8748 -2.0308 -8.8918 42 1 1.6963 -0.4331 -10.5990 43 1 0.6774 1.0277 -6.7532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178762728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:42 Heat of formation + Delta-G solvation = -27.450307 kcal Electronic energy + Delta-G solvation = -26395.724980 eV Core-core repulsion = 22443.618530 eV Total energy + Delta-G solvation = -3952.106450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.90007 -40.42861 -39.39294 -37.67595 -34.67743 -34.29388 -33.21810 -31.85381 -30.82170 -30.46490 -29.29591 -27.51223 -25.29782 -24.00078 -23.31243 -22.53980 -21.83215 -20.47141 -19.98783 -19.06927 -18.52562 -17.56254 -17.00056 -16.55612 -16.36255 -16.20626 -16.00627 -15.34661 -15.22589 -14.70226 -14.61028 -14.14178 -13.80018 -13.64765 -13.30277 -13.24047 -13.07984 -12.76371 -12.63088 -12.54636 -12.11016 -11.85626 -11.59919 -11.31432 -11.02014 -10.85224 -10.52753 -10.38784 -10.30418 -10.19582 -10.07194 -9.87596 -9.66047 -9.46904 -9.18293 -8.99384 -8.57051 -7.07838 -5.85979 -3.16147 0.98081 1.70940 2.48188 2.51586 2.62442 3.07336 3.20614 3.38945 3.43906 3.44771 4.21686 4.29714 4.33504 4.51292 4.70376 4.93865 5.06962 5.07943 5.14308 5.22664 5.28679 5.32497 5.45999 5.52979 5.54344 5.56230 5.72184 5.89040 5.91395 5.99841 6.05011 6.14299 6.24167 6.46559 6.50427 6.55392 6.60977 6.74119 6.91204 7.20200 7.55589 7.61842 7.91109 8.06237 8.32447 9.44101 9.98310 10.33110 11.36303 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.038926 B = 0.002130 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.134518 B =13141.305801 C =13623.185634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.074 0.926 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.910 3.090 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.092 3.908 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.544 6.544 20 C 0.106 3.894 21 N -0.714 5.714 22 C 0.590 3.410 23 O -0.537 6.537 24 C -0.236 4.236 25 C -0.164 4.164 26 C -0.042 4.042 27 O -0.174 6.174 28 C 0.027 3.973 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.410 0.590 41 H 0.160 0.840 42 H 0.210 0.790 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 0.896 -24.136 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.092 0.908 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.031 4.031 17 N -0.335 5.335 18 C 0.310 3.690 19 O -0.423 6.423 20 C -0.021 4.021 21 N -0.369 5.369 22 C 0.378 3.622 23 O -0.415 6.415 24 C -0.241 4.241 25 C -0.184 4.184 26 C -0.107 4.107 27 O -0.069 6.069 28 C -0.044 4.044 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.247 0.753 41 H 0.178 0.822 42 H 0.226 0.774 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.091 0.929 -24.234 25.005 hybrid contribution -0.152 -0.116 1.083 1.100 sum 5.939 0.813 -23.151 23.915 Atomic orbital electron populations 1.22011 0.94386 1.02515 1.02792 1.21879 0.95517 0.95788 0.84279 0.90825 1.21184 0.93296 0.92057 0.87321 0.91808 1.42669 1.05163 1.85296 1.02937 1.19186 0.93041 1.41530 0.83953 0.91075 1.24770 0.95310 1.02387 0.98207 1.69651 0.99346 1.56107 1.32745 0.86238 0.77032 0.78077 0.84617 1.21194 1.21683 1.21203 1.23570 1.01841 1.01367 0.92714 1.22505 0.94673 0.88261 0.97647 1.48526 1.49758 1.30491 1.04740 1.19979 0.81099 0.85122 0.82810 1.90664 1.39389 1.29189 1.83022 1.21056 1.01218 0.98043 0.81818 1.45533 1.53609 1.33369 1.04395 1.17210 0.79704 0.82952 0.82373 1.90800 1.37402 1.25839 1.87467 1.21455 1.07296 1.00833 0.94483 1.22787 1.03568 1.02240 0.89777 1.23977 0.98260 0.90240 0.98271 1.83814 1.58462 1.46737 1.17847 1.24581 0.98532 0.97850 0.83436 0.90048 0.92141 0.92461 0.77071 0.93290 0.90373 0.90548 0.91146 0.90968 0.88237 0.88209 0.75260 0.82204 0.77395 0.76975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 7.95 37.16 0.30 -2.53 16 2 C 0.13 2.13 3.48 -66.96 -0.23 1.90 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.17 3.16 3.46 -66.09 -0.23 2.93 16 5 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 6 N -0.72 -16.75 5.02 -51.65 -0.26 -17.01 16 7 C -0.25 -6.44 9.98 -15.05 -0.15 -6.59 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 11 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 16 C 0.09 1.11 6.69 -2.52 -0.02 1.09 16 17 N -0.60 -8.43 3.08 -163.02 -0.50 -8.93 16 18 C 0.52 7.12 7.70 -10.98 -0.08 7.04 16 19 O -0.54 -8.69 14.58 5.56 0.08 -8.61 16 20 C 0.11 1.18 5.16 -5.19 -0.03 1.15 16 21 N -0.71 -7.74 5.52 -62.57 -0.35 -8.08 16 22 C 0.59 7.11 7.81 -12.54 -0.10 7.01 16 23 O -0.54 -8.18 16.98 5.26 0.09 -8.09 16 24 C -0.24 -2.35 6.31 -103.28 -0.65 -3.00 16 25 C -0.16 -1.41 11.01 -37.46 -0.41 -1.82 16 26 C -0.04 -0.27 12.03 29.30 0.35 0.09 16 27 O -0.17 -1.33 10.52 7.64 0.08 -1.25 16 28 C 0.03 0.20 11.61 30.07 0.35 0.55 16 29 H 0.08 1.59 6.67 -51.93 -0.35 1.25 16 30 H 0.06 1.06 6.77 -51.93 -0.35 0.71 16 31 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.39 9.69 4.92 -40.82 -0.20 9.49 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.07 7.85 -51.93 -0.41 0.66 16 40 H 0.41 3.99 6.41 -40.82 -0.26 3.73 16 41 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.21 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.21 0.96 7.47 -52.49 -0.39 0.56 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -33.33 361.84 -6.56 -39.89 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.70 Total: 11.51 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.17 Total: 4.91 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.38 Total: -60.40 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.25 Total: -17.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.33 -6.56 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178762728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.443 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds