Wall clock time and date at job start Tue Mar 31 2020 12:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00046 * 2 1 4 4 H 1.09003 * 109.46842 * 329.99564 * 3 2 1 5 5 C 1.53002 * 109.47282 * 89.99551 * 3 2 1 6 6 C 1.50700 * 109.47173 * 210.00194 * 3 2 1 7 7 C 1.38368 * 119.92782 * 325.01811 * 6 3 2 8 8 C 1.38320 * 120.25936 * 180.02562 * 7 6 3 9 9 C 1.38018 * 120.12785 * 359.70267 * 8 7 6 10 10 C 1.39407 * 119.86796 * 0.54531 * 9 8 7 11 11 C 1.48201 * 120.13047 * 179.75020 * 10 9 8 12 12 C 1.39164 * 120.28362 * 123.16013 * 11 10 9 13 13 C 1.38320 * 120.10366 * 179.72695 * 12 11 10 14 14 C 1.38035 * 120.77606 * 0.02562 * 13 12 11 15 15 C 1.39124 * 120.23597 * 359.97438 * 14 13 12 16 16 N 1.38184 * 132.73974 * 180.02562 * 15 14 13 17 17 H 0.97002 * 124.70422 * 0.02562 * 16 15 14 18 18 C 1.35591 * 110.59376 * 180.02562 * 16 15 14 19 19 C 1.38994 * 109.24539 * 359.97438 * 18 16 15 20 20 C 1.40967 * 126.92726 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99964 * 155.46936 * 20 19 18 22 22 C 1.39691 * 119.99903 * 335.47334 * 20 19 18 23 23 N 1.31069 * 120.00023 * 169.99627 * 22 20 19 24 24 Si 1.86804 * 119.99953 * 349.99767 * 22 20 19 25 25 H 1.48494 * 109.47227 * 86.39576 * 24 22 20 26 26 H 1.48504 * 109.46772 * 206.39860 * 24 22 20 27 27 H 1.48500 * 109.47023 * 326.39546 * 24 22 20 28 28 C 1.40199 * 120.27772 * 302.88514 * 11 10 9 29 29 C 1.37962 * 119.94059 * 144.99649 * 6 3 2 30 30 H 1.08999 * 109.47117 * 60.00233 * 1 2 3 31 31 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47280 * 300.00588 * 1 2 3 33 33 H 1.09003 * 109.46482 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47137 * 300.00259 * 5 3 2 35 35 H 1.08999 * 109.46461 * 60.00135 * 5 3 2 36 36 H 1.07990 * 119.87097 * 359.97438 * 7 6 3 37 37 H 1.08003 * 119.93389 * 179.97438 * 8 7 6 38 38 H 1.08002 * 120.06577 * 180.30067 * 9 8 7 39 39 H 1.07996 * 119.94100 * 359.70079 * 12 11 10 40 40 H 1.08007 * 119.61097 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.88431 * 180.02562 * 14 13 12 42 42 H 1.07995 * 125.37741 * 179.97438 * 18 16 15 43 43 H 0.96998 * 120.00323 * 179.97438 * 23 22 20 44 44 H 1.08005 * 120.06452 * 0.04464 * 29 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 6 4.1435 0.1435 -0.6043 8 6 5.3643 0.0982 -1.2530 9 6 5.7837 1.1694 -2.0156 10 6 4.9793 2.3030 -2.1221 11 6 5.4265 3.4588 -2.9349 12 6 4.6351 3.9317 -3.9773 13 6 5.0534 5.0142 -4.7299 14 6 6.2547 5.6389 -4.4618 15 6 7.0642 5.1853 -3.4252 16 7 8.2878 5.6043 -2.9387 17 1 8.7975 6.3494 -3.2937 18 6 8.6773 4.8295 -1.8963 19 6 7.7089 3.8613 -1.6582 20 6 7.7360 2.8631 -0.6632 21 1 6.8126 2.4326 -0.3049 22 6 8.9572 2.4308 -0.1407 23 7 8.9802 1.6526 0.9137 24 14 10.5576 2.9620 -0.9446 25 1 10.9796 4.2727 -0.3887 26 1 11.6081 1.9479 -0.6735 27 1 10.3573 3.0875 -2.4106 28 6 6.6477 4.0885 -2.6564 29 6 3.7496 2.3428 -1.4657 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.6605 2.7675 1.4423 34 1 1.2567 1.8015 1.9563 35 1 2.8828 1.0775 1.9563 36 1 3.8177 -0.6986 -0.0119 37 1 5.9885 -0.7789 -1.1662 38 1 6.7349 1.1310 -2.5257 39 1 3.6930 3.4524 -4.1992 40 1 4.4331 5.3744 -5.5374 41 1 6.5671 6.4832 -5.0584 42 1 9.5950 4.9463 -1.3391 43 1 9.8282 1.3521 1.2764 44 1 3.1206 3.2170 -1.5476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242037526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:35 Heat of formation + Delta-G solvation = 29.465375 kcal Electronic energy + Delta-G solvation = -26595.433051 eV Core-core repulsion = 23056.643914 eV Total energy + Delta-G solvation = -3538.789137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.10132 -39.06956 -37.51120 -35.88668 -33.58130 -32.57268 -31.65887 -30.08591 -28.83708 -28.35459 -27.86991 -26.67416 -24.53279 -23.31927 -22.67970 -21.42668 -20.64364 -20.23840 -19.23848 -17.25042 -16.41304 -16.33400 -16.10155 -15.38920 -15.11392 -15.08897 -14.68251 -14.23781 -14.11483 -13.70797 -13.44064 -13.22003 -13.05916 -12.99763 -12.76988 -12.53642 -12.34011 -11.78281 -11.68416 -11.58572 -11.48862 -11.11558 -11.00783 -10.91719 -10.71110 -10.63533 -10.33626 -10.27166 -9.94610 -9.64748 -9.55381 -9.16737 -8.64000 -8.09351 -7.89938 -7.28233 -6.73475 -6.61807 -4.07802 1.63965 2.04531 2.25839 2.48765 3.07130 3.22822 3.33251 3.79390 3.83909 4.10519 4.26372 4.40812 4.67730 4.99411 5.18271 5.25942 5.31920 5.34889 5.36966 5.48837 5.56821 5.60196 5.64229 5.78990 5.82672 5.84481 5.89020 5.98931 6.08800 6.16802 6.26683 6.35724 6.42912 6.52696 6.63907 6.66971 6.73335 6.92421 7.01838 7.16544 7.17210 7.23948 7.26543 7.39102 7.54172 7.61193 7.70475 7.81855 8.20679 8.48543 8.69383 8.86580 9.06038 10.39775 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.004898 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.272593 B = 5715.324850 C = 7412.937041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.134 3.866 4 H 0.064 0.936 5 C -0.168 4.168 6 C -0.104 4.104 7 C -0.094 4.094 8 C -0.121 4.121 9 C -0.056 4.056 10 C -0.033 4.033 11 C 0.018 3.982 12 C -0.175 4.175 13 C -0.103 4.103 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.585 5.585 17 H 0.397 0.603 18 C -0.174 4.174 19 C 0.039 3.961 20 C -0.419 4.419 21 H 0.098 0.902 22 C 0.081 3.919 23 N -0.832 5.832 24 Si 0.904 3.096 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.249 1.249 28 C -0.113 4.113 29 C -0.101 4.101 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.278 0.722 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 0.601 -4.295 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.226 4.226 6 C -0.104 4.104 7 C -0.113 4.113 8 C -0.139 4.139 9 C -0.074 4.074 10 C -0.033 4.033 11 C 0.017 3.983 12 C -0.196 4.196 13 C -0.122 4.122 14 C -0.180 4.180 15 C -0.006 4.006 16 N -0.187 5.187 17 H 0.230 0.770 18 C -0.296 4.296 19 C 0.032 3.968 20 C -0.450 4.450 21 H 0.116 0.884 22 C -0.133 4.133 23 N -0.459 5.459 24 Si 0.734 3.266 25 H -0.204 1.204 26 H -0.226 1.226 27 H -0.173 1.173 28 C -0.120 4.120 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.161 0.839 43 H 0.088 0.912 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.293 0.316 -4.031 11.059 hybrid contribution 1.115 0.937 -0.260 1.480 sum -9.178 1.253 -4.291 10.208 Atomic orbital electron populations 1.22743 0.81673 1.02398 0.99691 1.87943 1.19010 1.27902 1.95093 1.20828 0.92060 0.84263 0.95229 0.91828 1.22259 1.01782 1.02507 0.96042 1.19356 0.95496 0.95486 1.00106 1.20816 0.93872 0.97412 0.99155 1.20985 0.95966 0.98998 0.97925 1.21191 0.97824 0.91762 0.96592 1.18615 0.93675 0.93413 0.97561 1.18100 0.92493 0.93382 0.94330 1.20627 1.00296 0.99782 0.98860 1.20389 0.95639 0.96556 0.99596 1.19835 0.96134 1.02837 0.99222 1.18137 0.87917 0.97370 0.97196 1.40919 1.17087 1.30074 1.30579 0.76980 1.21685 1.05487 1.01274 1.01104 1.18260 0.90247 0.94620 0.93627 1.18774 0.95164 1.16321 1.14787 0.88378 1.25859 1.00388 0.93476 0.93582 1.69736 1.28549 1.29054 1.18587 0.86494 0.80850 0.77053 0.82209 1.20414 1.22560 1.17298 1.19258 0.96115 0.97920 0.98660 1.20797 0.96138 0.97476 0.97517 0.94210 0.89909 0.94320 0.91148 0.92813 0.91394 0.86469 0.86466 0.85779 0.87174 0.87107 0.87839 0.83932 0.91166 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.32 9.49 -35.23 -0.33 -5.65 16 3 C 0.13 1.89 2.93 -27.88 -0.08 1.81 16 4 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 5 C -0.17 -2.25 9.51 37.16 0.35 -1.90 16 6 C -0.10 -1.78 5.00 -104.67 -0.52 -2.30 16 7 C -0.09 -1.69 9.35 -39.50 -0.37 -2.06 16 8 C -0.12 -2.29 10.03 -39.63 -0.40 -2.69 16 9 C -0.06 -1.15 6.78 -39.23 -0.27 -1.41 16 10 C -0.03 -0.66 4.60 -104.92 -0.48 -1.14 16 11 C 0.02 0.36 5.41 -104.72 -0.57 -0.20 16 12 C -0.18 -3.14 9.62 -39.21 -0.38 -3.52 16 13 C -0.10 -1.70 10.00 -39.63 -0.40 -2.09 16 14 C -0.16 -2.80 10.06 -39.33 -0.40 -3.19 16 15 C 0.11 2.19 7.23 -83.91 -0.61 1.59 16 16 N -0.58 -11.82 5.99 -9.81 -0.06 -11.88 16 17 H 0.40 6.42 8.96 -40.82 -0.37 6.05 16 18 C -0.17 -4.05 9.21 -15.61 -0.14 -4.19 16 19 C 0.04 0.97 5.57 -104.83 -0.58 0.39 16 20 C -0.42 -11.16 8.03 -38.01 -0.31 -11.46 16 21 H 0.10 2.78 5.98 -52.49 -0.31 2.46 16 22 C 0.08 2.13 5.51 -17.33 -0.10 2.04 16 23 N -0.83 -22.52 13.94 55.54 0.77 -21.75 16 24 Si 0.90 20.81 24.56 -169.99 -4.17 16.64 16 25 H -0.28 -6.18 6.58 56.52 0.37 -5.81 16 26 H -0.30 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.25 -5.82 6.64 56.52 0.38 -5.44 16 28 C -0.11 -2.60 6.07 -104.65 -0.64 -3.24 16 29 C -0.10 -1.83 9.26 -39.23 -0.36 -2.19 16 30 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.12 1.95 7.62 -52.49 -0.40 1.55 16 37 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.12 2.70 7.84 -52.49 -0.41 2.28 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.14 3.27 4.32 -52.49 -0.23 3.04 16 43 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 44 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -29.36 358.54 -9.46 -38.82 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.93 Total: 12.77 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -5.14 Total: -34.37 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.72 Total: -33.62 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.33 Total: -5.65 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.17 Total: 16.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.36 -9.46 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242037526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.290 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds