Wall clock time and date at job start Tue Mar 31 2020 12:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00046 * 2 1 4 4 H 1.09003 * 109.46842 * 329.99564 * 3 2 1 5 5 C 1.53002 * 109.47282 * 89.99551 * 3 2 1 6 6 C 1.50700 * 109.47173 * 210.00194 * 3 2 1 7 7 C 1.38368 * 119.92782 * 325.01811 * 6 3 2 8 8 C 1.38320 * 120.25936 * 180.02562 * 7 6 3 9 9 C 1.38018 * 120.12785 * 359.70267 * 8 7 6 10 10 C 1.39407 * 119.86796 * 0.54531 * 9 8 7 11 11 C 1.48201 * 120.13047 * 179.75020 * 10 9 8 12 12 C 1.39164 * 120.28362 * 123.16013 * 11 10 9 13 13 C 1.38320 * 120.10366 * 179.72695 * 12 11 10 14 14 C 1.38035 * 120.77606 * 0.02562 * 13 12 11 15 15 C 1.39124 * 120.23597 * 359.97438 * 14 13 12 16 16 N 1.38184 * 132.73974 * 180.02562 * 15 14 13 17 17 H 0.97002 * 124.70422 * 0.02562 * 16 15 14 18 18 C 1.35591 * 110.59376 * 180.02562 * 16 15 14 19 19 C 1.38994 * 109.24539 * 359.97438 * 18 16 15 20 20 C 1.40967 * 126.92726 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99964 * 155.46936 * 20 19 18 22 22 C 1.39691 * 119.99903 * 335.47334 * 20 19 18 23 23 N 1.31069 * 120.00023 * 169.99627 * 22 20 19 24 24 Si 1.86804 * 119.99953 * 349.99767 * 22 20 19 25 25 H 1.48494 * 109.47227 * 86.39576 * 24 22 20 26 26 H 1.48504 * 109.46772 * 206.39860 * 24 22 20 27 27 H 1.48500 * 109.47023 * 326.39546 * 24 22 20 28 28 C 1.40199 * 120.27772 * 302.88514 * 11 10 9 29 29 C 1.37962 * 119.94059 * 144.99649 * 6 3 2 30 30 H 1.08999 * 109.47117 * 60.00233 * 1 2 3 31 31 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47280 * 300.00588 * 1 2 3 33 33 H 1.09003 * 109.46482 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47137 * 300.00259 * 5 3 2 35 35 H 1.08999 * 109.46461 * 60.00135 * 5 3 2 36 36 H 1.07990 * 119.87097 * 359.97438 * 7 6 3 37 37 H 1.08003 * 119.93389 * 179.97438 * 8 7 6 38 38 H 1.08002 * 120.06577 * 180.30067 * 9 8 7 39 39 H 1.07996 * 119.94100 * 359.70079 * 12 11 10 40 40 H 1.08007 * 119.61097 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.88431 * 180.02562 * 14 13 12 42 42 H 1.07995 * 125.37741 * 179.97438 * 18 16 15 43 43 H 0.96998 * 120.00323 * 179.97438 * 23 22 20 44 44 H 1.08005 * 120.06452 * 0.04464 * 29 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 6 4.1435 0.1435 -0.6043 8 6 5.3643 0.0982 -1.2530 9 6 5.7837 1.1694 -2.0156 10 6 4.9793 2.3030 -2.1221 11 6 5.4265 3.4588 -2.9349 12 6 4.6351 3.9317 -3.9773 13 6 5.0534 5.0142 -4.7299 14 6 6.2547 5.6389 -4.4618 15 6 7.0642 5.1853 -3.4252 16 7 8.2878 5.6043 -2.9387 17 1 8.7975 6.3494 -3.2937 18 6 8.6773 4.8295 -1.8963 19 6 7.7089 3.8613 -1.6582 20 6 7.7360 2.8631 -0.6632 21 1 6.8126 2.4326 -0.3049 22 6 8.9572 2.4308 -0.1407 23 7 8.9802 1.6526 0.9137 24 14 10.5576 2.9620 -0.9446 25 1 10.9796 4.2727 -0.3887 26 1 11.6081 1.9479 -0.6735 27 1 10.3573 3.0875 -2.4106 28 6 6.6477 4.0885 -2.6564 29 6 3.7496 2.3428 -1.4657 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.6605 2.7675 1.4423 34 1 1.2567 1.8015 1.9563 35 1 2.8828 1.0775 1.9563 36 1 3.8177 -0.6986 -0.0119 37 1 5.9885 -0.7789 -1.1662 38 1 6.7349 1.1310 -2.5257 39 1 3.6930 3.4524 -4.1992 40 1 4.4331 5.3744 -5.5374 41 1 6.5671 6.4832 -5.0584 42 1 9.5950 4.9463 -1.3391 43 1 9.8282 1.3521 1.2764 44 1 3.1206 3.2170 -1.5476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242037526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:34 Heat of formation + Delta-G solvation = 13.810779 kcal Electronic energy + Delta-G solvation = -26596.111885 eV Core-core repulsion = 23056.643914 eV Total energy + Delta-G solvation = -3539.467972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69517 -40.40117 -38.70542 -37.38663 -35.39888 -33.96436 -33.09519 -31.75980 -30.18838 -29.89402 -29.38973 -27.52304 -26.34624 -24.63252 -24.10376 -22.93487 -22.17598 -21.73746 -20.87921 -18.76629 -18.19930 -17.56046 -17.44962 -16.95014 -16.43632 -16.16412 -16.04700 -16.01262 -15.52605 -15.09353 -15.02624 -14.86796 -14.70766 -14.24279 -14.10038 -13.66001 -13.44861 -13.42977 -13.24203 -13.00808 -12.84356 -12.64202 -12.49703 -12.34969 -12.24990 -12.06846 -11.96519 -11.55769 -11.51832 -11.44920 -11.01676 -10.59654 -10.24901 -9.57779 -9.44418 -8.85596 -8.59876 -8.36111 -6.02822 0.12745 0.58584 0.76353 0.97278 1.21887 1.35206 1.47822 1.97305 2.21871 2.70794 2.80156 2.96141 3.12287 3.46862 3.82330 3.89693 4.04469 4.20745 4.25927 4.29729 4.33924 4.36336 4.55979 4.57143 4.58944 4.62688 4.64142 4.70214 4.80685 4.88250 4.91892 4.96096 4.97352 5.09783 5.22212 5.24442 5.28498 5.31904 5.48366 5.64445 5.66336 5.73540 5.78768 5.93765 6.02183 6.13457 6.21444 6.35371 6.51655 6.58034 6.87940 7.08871 7.21347 8.50031 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.004898 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.272593 B = 5715.324850 C = 7412.937041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.137 3.863 4 H 0.087 0.913 5 C -0.166 4.166 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.132 4.132 9 C -0.076 4.076 10 C -0.045 4.045 11 C -0.008 4.008 12 C -0.164 4.164 13 C -0.092 4.092 14 C -0.150 4.150 15 C 0.093 3.907 16 N -0.579 5.579 17 H 0.417 0.583 18 C -0.160 4.160 19 C 0.001 3.999 20 C -0.432 4.432 21 H 0.065 0.935 22 C 0.038 3.962 23 N -0.879 5.879 24 Si 0.959 3.041 25 H -0.262 1.262 26 H -0.294 1.294 27 H -0.256 1.256 28 C -0.150 4.150 29 C -0.105 4.105 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.281 0.719 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 2.872 -6.506 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.080 3.920 4 H 0.105 0.895 5 C -0.223 4.223 6 C -0.100 4.100 7 C -0.120 4.120 8 C -0.150 4.150 9 C -0.095 4.095 10 C -0.045 4.045 11 C -0.008 4.008 12 C -0.184 4.184 13 C -0.111 4.111 14 C -0.171 4.171 15 C -0.017 4.017 16 N -0.184 5.184 17 H 0.254 0.746 18 C -0.283 4.283 19 C -0.006 4.006 20 C -0.465 4.465 21 H 0.083 0.917 22 C -0.171 4.171 23 N -0.510 5.510 24 Si 0.786 3.214 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.180 1.180 28 C -0.156 4.156 29 C -0.123 4.123 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.115 0.885 39 H 0.153 0.847 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.091 0.909 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.509 2.622 -6.274 14.237 hybrid contribution 1.568 0.307 0.264 1.620 sum -10.941 2.929 -6.009 12.821 Atomic orbital electron populations 1.22993 0.79462 1.03830 1.00925 1.87911 1.21426 1.27604 1.95234 1.20804 0.90778 0.85157 0.95262 0.89547 1.22231 1.02823 1.01507 0.95783 1.19764 0.96785 0.94477 0.98998 1.20983 0.93503 0.98410 0.99081 1.21118 0.96833 0.98944 0.98138 1.21038 0.97298 0.93184 0.97955 1.18779 0.94421 0.93099 0.98199 1.18371 0.92727 0.93918 0.95826 1.21030 1.00498 0.99648 0.97177 1.20950 0.95408 0.95048 0.99666 1.20316 0.95563 1.03375 0.97895 1.18528 0.88278 0.96976 0.97931 1.40824 1.17352 1.30360 1.29842 0.74566 1.21761 1.04659 1.00729 1.01183 1.18441 0.92442 0.95173 0.94521 1.18652 0.94242 1.17456 1.16105 0.91694 1.26476 1.02884 0.93716 0.94000 1.69804 1.29194 1.31552 1.20412 0.85656 0.77698 0.77339 0.80695 1.18863 1.22166 1.18047 1.19503 0.97020 0.99796 0.99306 1.21021 0.95656 0.98436 0.97178 0.93109 0.88524 0.92873 0.91792 0.90054 0.93215 0.85433 0.86192 0.88485 0.84710 0.82439 0.84044 0.83684 0.90946 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.40 -10.56 9.49 -148.98 -1.41 -11.97 16 3 C 0.14 3.67 2.93 29.85 0.09 3.76 16 4 H 0.09 1.92 7.69 -2.39 -0.02 1.90 16 5 C -0.17 -4.25 9.51 71.98 0.68 -3.57 16 6 C -0.10 -3.42 5.00 -19.90 -0.10 -3.52 16 7 C -0.10 -3.77 9.35 22.32 0.21 -3.56 16 8 C -0.13 -5.42 10.03 22.24 0.22 -5.20 16 9 C -0.08 -3.40 6.78 22.50 0.15 -3.25 16 10 C -0.04 -1.87 4.60 -20.06 -0.09 -1.97 16 11 C -0.01 -0.33 5.41 -19.93 -0.11 -0.43 16 12 C -0.16 -5.37 9.62 22.51 0.22 -5.16 16 13 C -0.09 -2.58 10.00 22.24 0.22 -2.36 16 14 C -0.15 -4.64 10.06 22.43 0.23 -4.41 16 15 C 0.09 3.71 7.23 38.85 0.28 3.99 16 16 N -0.58 -22.42 5.99 -184.94 -1.11 -23.53 16 17 H 0.42 12.38 8.96 -92.71 -0.83 11.55 16 18 C -0.16 -7.45 9.21 84.29 0.78 -6.68 16 19 C 0.00 0.04 5.57 -20.00 -0.11 -0.07 16 20 C -0.43 -24.51 8.03 23.29 0.19 -24.32 16 21 H 0.06 4.00 5.98 -2.91 -0.02 3.99 16 22 C 0.04 2.11 5.51 85.16 0.47 2.58 16 23 N -0.88 -50.65 13.94 21.79 0.30 -50.34 16 24 Si 0.96 44.39 24.56 68.60 1.68 46.07 16 25 H -0.26 -11.36 6.58 99.48 0.65 -10.71 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.26 -11.97 6.64 99.48 0.66 -11.31 16 28 C -0.15 -6.96 6.07 -19.88 -0.12 -7.08 16 29 C -0.10 -3.79 9.26 22.50 0.21 -3.58 16 30 H 0.05 0.76 8.08 -2.39 -0.02 0.75 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 0.76 7.87 -2.39 -0.02 0.74 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.61 7.87 -2.39 -0.02 1.60 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.13 4.37 7.62 -2.92 -0.02 4.35 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.10 4.70 7.84 -2.91 -0.02 4.68 16 39 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 42 H 0.15 6.58 4.32 -2.91 -0.01 6.57 16 43 H 0.28 14.93 8.30 -92.71 -0.77 14.16 16 44 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -68.19 358.54 4.20 -63.99 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: 0.10 Total: 38.97 kcal Atomic # 6 Polarization: -67.83 SS G_CDS: 4.64 Total: -63.19 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -0.80 Total: -73.87 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.41 Total: -11.97 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.68 Total: 46.07 kcal Total: -68.19 4.20 -63.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242037526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.804 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds