Wall clock time and date at job start Tue Mar 31 2020 13:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34782 * 119.99585 * 2 1 4 4 O 1.21279 * 119.99868 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99912 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47183 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.46696 * 304.99914 * 6 5 3 8 8 C 1.52998 * 109.47118 * 185.00085 * 6 5 3 9 9 N 1.46494 * 109.47062 * 65.00122 * 6 5 3 10 10 C 1.34778 * 119.99866 * 204.99945 * 9 6 5 11 11 O 1.21595 * 120.00147 * 0.02562 * 10 9 6 12 12 N 1.34775 * 120.00000 * 179.97438 * 10 9 6 13 13 C 1.40032 * 120.00067 * 175.49281 * 12 10 9 14 14 C 1.38911 * 120.00123 * 214.85537 * 13 12 10 15 15 C 1.38005 * 119.99613 * 179.79283 * 14 13 12 16 16 C 1.38905 * 120.00218 * 0.46147 * 15 14 13 17 17 O 1.35784 * 120.00127 * 179.76936 * 16 15 14 18 18 C 1.34812 * 117.00240 * 185.36785 * 17 16 15 19 19 H 1.08002 * 120.00035 * 354.96093 * 18 17 16 20 20 C 1.38625 * 120.00038 * 174.95986 * 18 17 16 21 21 N 1.31567 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47066 * 59.99879 * 22 20 18 24 24 H 1.48493 * 109.47235 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46974 * 300.00302 * 22 20 18 26 26 C 1.38905 * 120.00268 * 359.79323 * 16 15 14 27 27 C 1.38010 * 119.99786 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47194 * 299.72755 * 1 2 3 29 29 H 1.09003 * 109.46975 * 59.73093 * 1 2 3 30 30 H 1.09003 * 109.46488 * 179.72630 * 1 2 3 31 31 H 0.96993 * 120.00308 * 180.27079 * 2 1 3 32 32 H 1.08999 * 109.47508 * 300.00275 * 5 3 2 33 33 H 1.09002 * 109.47306 * 59.99925 * 5 3 2 34 34 H 1.09003 * 109.47356 * 59.99932 * 8 6 5 35 35 H 1.09002 * 109.47429 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47281 * 300.00290 * 8 6 5 37 37 H 0.97004 * 120.00212 * 25.00173 * 9 6 5 38 38 H 0.96998 * 119.99883 * 355.50173 * 12 10 9 39 39 H 1.07999 * 120.00334 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.99905 * 180.23269 * 15 14 13 41 41 H 0.97001 * 120.00080 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.00194 * 179.97438 * 26 16 15 43 43 H 1.07996 * 120.00000 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1557 2.6099 -0.0002 7 1 3.7214 3.1483 -0.8426 8 6 5.6806 2.6117 -0.1253 9 7 3.7677 3.2657 1.2510 10 6 3.6408 4.6067 1.2978 11 8 3.8480 5.2721 0.3014 12 7 3.2833 5.2099 2.4488 13 6 3.2431 6.6077 2.5235 14 6 3.5949 7.2505 3.7036 15 6 3.5593 8.6282 3.7758 16 6 3.1625 9.3717 2.6716 17 8 3.1231 10.7270 2.7442 18 6 2.6242 11.3828 1.6772 19 1 2.3544 10.8367 0.7853 20 6 2.4576 12.7582 1.7247 21 7 2.7868 13.4236 2.8109 22 14 1.7671 13.6670 0.2459 23 1 0.4090 13.1515 -0.0620 24 1 1.6892 15.1186 0.5491 25 1 2.6549 13.4533 -0.9253 26 6 2.8057 8.7286 1.4932 27 6 2.8458 7.3511 1.4194 28 1 -0.3633 0.5096 0.8924 29 1 -0.3633 0.5180 -0.8876 30 1 -0.3632 -1.0277 -0.0049 31 1 1.9500 -0.8399 -0.0040 32 1 4.0089 0.6537 0.8908 33 1 4.0096 0.6534 -0.8891 34 1 5.9694 2.1238 -1.0563 35 1 6.0439 3.6394 -0.1264 36 1 6.1149 2.0733 0.7170 37 1 3.6021 2.7348 2.0458 38 1 3.0540 4.6759 3.2253 39 1 3.8998 6.6724 4.5634 40 1 3.8364 9.1282 4.6921 41 1 2.6699 14.3860 2.8443 42 1 2.4968 9.3066 0.6348 43 1 2.5680 6.8511 0.5033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365002242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:59 Heat of formation + Delta-G solvation = -60.424402 kcal Electronic energy + Delta-G solvation = -26256.084252 eV Core-core repulsion = 22302.547938 eV Total energy + Delta-G solvation = -3953.536314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49732 -39.76370 -38.63542 -36.82468 -35.62246 -34.86307 -33.80444 -32.15241 -31.46056 -30.05175 -29.08515 -27.53782 -26.35228 -25.15685 -22.76472 -21.99471 -21.24957 -20.60458 -20.35451 -18.50007 -17.85601 -17.61469 -17.16855 -16.61674 -16.10270 -15.91580 -15.20298 -15.01615 -14.45986 -14.42101 -14.27843 -13.77940 -13.55402 -13.46020 -13.43934 -13.27123 -12.74660 -12.71741 -12.65921 -12.47837 -12.30022 -12.04182 -11.63288 -11.46417 -11.37557 -11.20780 -10.91233 -10.65043 -10.36776 -10.18179 -9.76704 -9.53760 -9.52845 -9.06766 -8.99424 -8.57059 -8.06063 -6.77808 -6.34269 -3.91551 2.27742 2.31756 2.39705 2.80380 2.87553 3.21922 3.22614 3.25393 3.54856 4.06999 4.27996 4.32200 4.42846 4.71298 4.76388 4.82598 5.03540 5.11704 5.19780 5.20421 5.25888 5.38032 5.41900 5.49482 5.79516 5.83031 5.90601 5.97544 6.06813 6.26671 6.34723 6.44791 6.58275 6.82433 6.88106 7.04675 7.10510 7.24707 7.35106 7.48280 7.57616 7.88885 7.93666 8.11382 8.23955 8.89445 9.11891 9.82749 10.83962 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002382 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.732896 B =11753.832212 C =12165.500393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.741 5.741 3 C 0.503 3.497 4 O -0.516 6.516 5 C -0.150 4.150 6 C 0.177 3.823 7 H 0.097 0.903 8 C -0.165 4.165 9 N -0.735 5.735 10 C 0.707 3.293 11 O -0.575 6.575 12 N -0.677 5.677 13 C 0.058 3.942 14 C -0.097 4.097 15 C -0.178 4.178 16 C 0.144 3.856 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.866 5.866 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.270 1.270 26 C -0.219 4.219 27 C -0.064 4.064 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.389 0.611 38 H 0.395 0.605 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.269 0.731 42 H 0.129 0.871 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -31.157 -3.039 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.288 3.712 4 O -0.390 6.390 5 C -0.191 4.191 6 C 0.071 3.929 7 H 0.115 0.885 8 C -0.223 4.223 9 N -0.390 5.390 10 C 0.408 3.592 11 O -0.452 6.452 12 N -0.324 5.324 13 C -0.035 4.035 14 C -0.118 4.118 15 C -0.198 4.198 16 C 0.090 3.910 17 O -0.083 6.083 18 C -0.465 4.465 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.502 5.502 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.195 1.195 26 C -0.239 4.239 27 C -0.084 4.084 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.222 0.778 38 H 0.229 0.771 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.147 0.853 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.585 -29.362 -3.736 29.604 hybrid contribution -0.375 -0.719 0.017 0.812 sum 0.210 -30.081 -3.719 30.311 Atomic orbital electron populations 1.21524 0.79636 1.02047 1.02517 1.45858 1.07817 1.08707 1.77067 1.20757 0.90316 0.83731 0.76356 1.90830 1.70125 1.30900 1.47144 1.22075 0.92293 0.99375 1.05345 1.20449 0.94283 0.90034 0.88142 0.88540 1.22227 0.94976 1.03496 1.01630 1.44944 1.75590 1.05397 1.13085 1.15834 0.77861 0.81678 0.83842 1.90912 1.57135 1.63225 1.33917 1.42270 1.71313 1.05622 1.13153 1.17049 1.09708 0.80377 0.96412 1.20314 1.01402 0.93630 0.96439 1.19949 1.09719 0.92179 0.97990 1.19401 0.93529 0.85071 0.92981 1.83970 1.71141 1.12247 1.40971 1.21279 1.42375 0.90169 0.92682 0.89141 1.25254 0.97160 0.95637 0.98502 1.70038 1.44806 1.08398 1.26916 0.85799 0.79447 0.78286 0.80019 1.19533 1.20375 1.19520 1.21114 1.09593 0.94091 0.99078 1.20919 0.96569 0.93081 0.97834 0.92210 0.92214 0.90800 0.76678 0.88364 0.87308 0.91683 0.91186 0.92546 0.77831 0.77115 0.86915 0.86173 0.92123 0.85312 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.85 0.64 1.12 16 2 N -0.74 -3.95 5.71 -67.08 -0.38 -4.33 16 3 C 0.50 4.27 7.69 -10.99 -0.08 4.19 16 4 O -0.52 -7.24 15.35 5.56 0.09 -7.15 16 5 C -0.15 -0.82 5.24 -27.88 -0.15 -0.96 16 6 C 0.18 1.71 2.13 -67.93 -0.15 1.57 16 7 H 0.10 1.28 7.39 -51.93 -0.38 0.90 16 8 C -0.16 -1.38 9.48 37.16 0.35 -1.02 16 9 N -0.74 -8.25 4.22 -58.68 -0.25 -8.50 16 10 C 0.71 11.49 8.37 -86.92 -0.73 10.76 16 11 O -0.58 -11.86 13.44 5.28 0.07 -11.79 16 12 N -0.68 -10.47 5.35 -14.18 -0.08 -10.54 16 13 C 0.06 1.12 6.30 -83.61 -0.53 0.59 16 14 C -0.10 -1.81 9.96 -39.42 -0.39 -2.21 16 15 C -0.18 -3.92 9.98 -39.42 -0.39 -4.31 16 16 C 0.14 3.68 6.65 -39.09 -0.26 3.42 16 17 O -0.18 -5.33 9.75 0.00 0.00 -5.33 16 18 C -0.39 -11.36 9.48 30.88 0.29 -11.07 16 19 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.87 -26.16 13.67 55.48 0.76 -25.41 16 22 Si 0.94 21.49 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 26 C -0.22 -5.29 9.16 -39.42 -0.36 -5.65 16 27 C -0.06 -1.41 8.69 -39.42 -0.34 -1.76 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.40 0.74 8.83 -40.82 -0.36 0.38 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.39 3.20 8.62 -40.82 -0.35 2.85 16 38 H 0.40 4.58 8.84 -40.82 -0.36 4.21 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.13 3.13 5.63 -52.49 -0.30 2.83 16 43 H 0.13 2.88 6.22 -52.49 -0.33 2.56 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -38.98 368.01 -7.17 -46.15 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.71 Total: 9.24 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.19 Total: -4.34 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.05 Total: -48.78 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.16 Total: -24.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.98 -7.17 -46.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365002242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.271 kcal (2) G-P(sol) polarization free energy of solvation -38.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds