Wall clock time and date at job start Tue Mar 31 2020 13:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47349 * 2 1 4 4 C 1.35971 * 119.60671 * 90.00049 * 3 2 1 5 5 C 1.35865 * 120.59528 * 179.97438 * 4 3 2 6 6 N 1.40443 * 120.08630 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99974 * 122.95556 * 6 5 4 8 8 O 1.21596 * 120.00054 * 5.02975 * 7 6 5 9 9 N 1.34780 * 120.00111 * 185.03256 * 7 6 5 10 10 C 1.47017 * 125.64715 * 359.68728 * 9 7 6 11 11 C 1.54339 * 107.26535 * 178.85450 * 10 9 7 12 12 C 1.55150 * 103.01812 * 338.14158 * 11 10 9 13 13 O 1.42902 * 111.00461 * 277.23261 * 12 11 10 14 14 C 1.50708 * 111.03591 * 153.39669 * 12 11 10 15 15 H 1.07999 * 119.99891 * 275.42407 * 14 12 11 16 16 C 1.37873 * 119.99773 * 95.42410 * 14 12 11 17 17 N 1.31515 * 119.99573 * 172.04068 * 16 14 12 18 18 Si 1.86798 * 120.00272 * 352.04001 * 16 14 12 19 19 H 1.48500 * 109.47121 * 85.91514 * 18 16 14 20 20 H 1.48499 * 109.47219 * 205.91551 * 18 16 14 21 21 H 1.48499 * 109.47041 * 325.91536 * 18 16 14 22 22 C 1.47427 * 125.64750 * 180.02562 * 9 7 6 23 23 C 1.40618 * 119.82927 * 0.02777 * 5 4 3 24 24 C 1.36359 * 119.24686 * 359.97438 * 23 5 4 25 25 C 1.34630 * 119.61055 * 269.73007 * 3 2 1 26 26 O 1.22106 * 119.92768 * 0.02562 * 25 3 2 27 27 H 1.08997 * 109.46960 * 59.99719 * 1 2 3 28 28 H 1.08997 * 109.46760 * 299.99941 * 1 2 3 29 29 H 1.08994 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47636 * 120.00594 * 2 1 3 31 31 H 1.09009 * 109.47193 * 240.00191 * 2 1 3 32 32 H 1.07994 * 119.70334 * 0.02562 * 4 3 2 33 33 H 0.96998 * 120.00326 * 302.95834 * 6 5 4 34 34 H 1.09004 * 109.88696 * 298.40085 * 10 9 7 35 35 H 1.09001 * 109.88149 * 59.56566 * 10 9 7 36 36 H 1.09001 * 110.84439 * 219.67232 * 11 10 9 37 37 H 1.08998 * 110.51503 * 96.45554 * 11 10 9 38 38 H 0.96706 * 113.99787 * 177.59177 * 13 12 11 39 39 H 0.96998 * 119.99764 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.36419 * 322.92404 * 22 9 7 41 41 H 1.09001 * 110.36508 * 85.14060 * 22 9 7 42 42 H 1.07996 * 120.37739 * 180.02562 * 23 5 4 43 43 H 1.07997 * 120.30361 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2424 2.0146 1.1822 5 6 2.6957 3.2951 1.2056 6 7 2.9239 3.9389 2.4328 7 6 4.1417 4.4439 2.7126 8 8 5.0168 4.4241 1.8685 9 7 4.3897 4.9709 3.9281 10 6 3.4258 5.0645 5.0342 11 6 4.1606 5.7090 6.2287 12 6 5.6539 5.4332 5.9105 13 8 6.0317 4.1188 6.3249 14 6 6.5428 6.4725 6.5438 15 1 6.7236 7.4093 6.0377 16 6 7.1252 6.2273 7.7692 17 7 8.0213 7.0613 8.2499 18 14 6.6415 4.7107 8.7466 19 1 7.4633 3.5550 8.3060 20 1 6.8717 4.9594 10.1924 21 1 5.2048 4.4122 8.5183 22 6 5.6704 5.5553 4.3662 23 6 2.9358 3.9743 -0.0020 24 6 2.7089 3.3328 -1.1837 25 6 2.2454 2.0066 -1.1705 26 8 2.0432 1.4214 -2.2230 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 2.0590 1.4948 2.1109 33 1 2.2051 4.0200 3.0790 34 1 2.5804 5.6855 4.7378 35 1 3.0786 4.0684 5.3087 36 1 3.8713 5.2320 7.1652 37 1 3.9653 6.7807 6.2642 38 1 6.9465 3.8875 6.1134 39 1 8.4308 6.8890 9.1122 40 1 6.5061 4.9926 3.9501 41 1 5.7319 6.6016 4.0671 42 1 3.2966 4.9922 0.0063 43 1 2.8880 3.8381 -2.1212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365763617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:52 Heat of formation + Delta-G solvation = -61.208768 kcal Electronic energy + Delta-G solvation = -27195.585240 eV Core-core repulsion = 23242.014913 eV Total energy + Delta-G solvation = -3953.570326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64617 -40.12954 -38.19868 -36.99899 -35.77173 -34.88621 -33.74786 -32.43480 -31.14237 -30.54452 -28.92832 -28.23715 -25.37421 -24.98558 -23.69334 -22.93871 -22.06822 -20.06283 -19.89307 -18.59388 -17.77198 -17.60908 -17.35707 -16.83014 -16.08410 -15.68542 -15.49165 -15.28356 -14.91946 -14.64290 -14.50187 -14.27143 -13.75762 -13.73215 -13.35905 -13.11853 -12.80539 -12.66170 -12.53754 -12.48332 -12.12701 -11.87802 -11.73949 -11.63941 -11.58626 -11.07930 -10.61064 -10.45615 -10.41293 -10.30910 -10.12681 -10.03302 -9.58324 -9.37577 -8.75349 -8.62551 -8.22073 -7.89601 -6.27945 -4.39582 0.61504 1.58216 2.21487 2.83109 3.26213 3.36379 3.45719 3.49016 3.61386 4.00480 4.28417 4.35247 4.39368 4.64750 4.74163 4.78835 4.90170 4.90910 5.00544 5.02694 5.23471 5.25125 5.39124 5.45431 5.57579 5.66244 5.67751 5.76689 5.83632 5.93390 6.00689 6.17507 6.38694 6.43794 6.52964 6.61221 6.63873 6.84763 6.95244 7.10587 7.35509 7.83656 8.01700 8.05919 8.54330 8.68770 8.73135 9.32305 10.81049 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027422 B = 0.002771 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.825053 B =10102.174771 C =10584.566878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 N -0.489 5.489 4 C 0.110 3.890 5 C 0.068 3.932 6 N -0.688 5.688 7 C 0.720 3.280 8 O -0.583 6.583 9 N -0.623 5.623 10 C 0.099 3.901 11 C -0.119 4.119 12 C 0.220 3.780 13 O -0.559 6.559 14 C -0.555 4.555 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.884 5.884 18 Si 0.953 3.047 19 H -0.294 1.294 20 H -0.326 1.326 21 H -0.273 1.273 22 C 0.108 3.892 23 C 0.003 3.997 24 C -0.237 4.237 25 C 0.513 3.487 26 O -0.557 6.557 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.163 0.837 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.374 0.626 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 -10.372 -10.123 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.033 4.033 3 N -0.201 5.201 4 C -0.019 4.019 5 C -0.030 4.030 6 N -0.341 5.341 7 C 0.422 3.578 8 O -0.460 6.460 9 N -0.359 5.359 10 C -0.025 4.025 11 C -0.157 4.157 12 C 0.179 3.821 13 O -0.367 6.367 14 C -0.592 4.592 15 H 0.101 0.899 16 C -0.133 4.133 17 N -0.519 5.519 18 Si 0.789 3.211 19 H -0.222 1.222 20 H -0.258 1.258 21 H -0.199 1.199 22 C -0.014 4.014 23 C -0.020 4.020 24 C -0.259 4.259 25 C 0.316 3.684 26 O -0.441 6.441 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.180 0.820 33 H 0.240 0.760 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.223 0.777 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.157 0.843 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.836 -10.754 -11.119 22.138 hybrid contribution 0.069 -0.499 0.912 1.042 sum -15.767 -11.253 -10.208 21.896 Atomic orbital electron populations 1.22116 0.94175 1.03227 1.02982 1.21969 0.95803 0.80469 1.05076 1.45378 1.53977 1.14597 1.06158 1.21738 0.98231 0.91871 0.90059 1.16392 1.09333 0.91226 0.86088 1.42304 1.12213 1.61960 1.17657 1.15443 0.82020 0.78365 0.81940 1.90937 1.44994 1.63380 1.46713 1.47708 1.15619 1.62036 1.10555 1.22110 0.92008 1.00137 0.88196 1.22920 0.95693 1.00994 0.96114 1.20240 0.92365 0.81367 0.88110 1.86112 1.34351 1.34990 1.81277 1.21109 1.29650 1.03125 1.05328 0.89910 1.25152 0.93208 0.97678 0.97309 1.69963 1.25012 1.37597 1.19288 0.85624 0.79675 0.80698 0.75104 1.22165 1.25808 1.19885 1.23050 0.83386 0.97731 0.97239 1.21585 0.89375 1.00215 0.90815 1.22008 1.09554 0.94626 0.99714 1.17148 0.80336 0.88250 0.82707 1.90952 1.55629 1.67960 1.29542 0.91618 0.92086 0.90565 0.89075 0.88005 0.81966 0.75974 0.92516 0.92291 0.90162 0.89524 0.77704 0.92272 0.91057 0.91034 0.84334 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 37.16 0.38 -0.63 16 2 C 0.09 0.64 6.06 -4.04 -0.02 0.62 16 3 N -0.49 -4.87 2.59 -119.57 -0.31 -5.18 16 4 C 0.11 0.99 10.20 -16.57 -0.17 0.82 16 5 C 0.07 0.76 5.79 -83.86 -0.49 0.27 16 6 N -0.69 -7.93 5.25 -14.37 -0.08 -8.01 16 7 C 0.72 11.57 8.35 -86.92 -0.73 10.84 16 8 O -0.58 -11.51 15.65 5.28 0.08 -11.43 16 9 N -0.62 -10.15 3.33 -176.22 -0.59 -10.73 16 10 C 0.10 1.37 6.16 -3.06 -0.02 1.35 16 11 C -0.12 -2.08 5.97 -24.89 -0.15 -2.23 16 12 C 0.22 4.50 0.71 -89.61 -0.06 4.44 16 13 O -0.56 -11.44 8.76 -35.23 -0.31 -11.75 16 14 C -0.55 -13.85 8.86 -34.44 -0.31 -14.15 16 15 H 0.08 2.26 8.01 -52.49 -0.42 1.84 16 16 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 17 N -0.88 -25.19 13.96 55.43 0.77 -24.41 16 18 Si 0.95 22.13 24.63 -169.99 -4.19 17.94 16 19 H -0.29 -6.68 7.02 56.52 0.40 -6.29 16 20 H -0.33 -7.88 7.11 56.52 0.40 -7.48 16 21 H -0.27 -6.16 5.70 56.52 0.32 -5.84 16 22 C 0.11 2.06 6.10 -2.52 -0.02 2.04 16 23 C 0.00 0.04 8.89 -39.36 -0.35 -0.31 16 24 C -0.24 -2.85 9.98 -39.41 -0.39 -3.24 16 25 C 0.51 6.68 7.40 -15.47 -0.11 6.57 16 26 O -0.56 -8.88 16.63 4.82 0.08 -8.80 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.43 8.01 -51.93 -0.42 0.02 16 31 H 0.10 0.86 7.38 -51.92 -0.38 0.48 16 32 H 0.16 0.95 8.04 -52.49 -0.42 0.53 16 33 H 0.40 3.50 7.82 -40.82 -0.32 3.18 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.44 6.89 -51.93 -0.36 1.08 16 37 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.37 7.10 8.43 45.56 0.38 7.49 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 41 H 0.07 1.39 8.00 -51.93 -0.42 0.97 16 42 H 0.14 1.68 7.89 -52.49 -0.41 1.27 16 43 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -33.92 354.42 -7.07 -40.99 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.35 Total: 7.87 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -2.53 Total: 8.18 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.20 Total: -48.33 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.15 Total: -31.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.19 Total: 17.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.92 -7.07 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365763617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.218 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds