Wall clock time and date at job start Tue Mar 31 2020 12:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.37054 * 2 1 4 4 C 1.53740 * 110.72676 * 237.69295 * 2 1 3 5 5 N 1.46537 * 105.19753 * 241.45336 * 4 2 1 6 6 C 1.34778 * 124.98235 * 179.85941 * 5 4 2 7 7 O 1.21283 * 120.00145 * 175.10013 * 6 5 4 8 8 C 1.50700 * 119.99738 * 355.09961 * 6 5 4 9 9 H 1.09003 * 109.46925 * 336.78098 * 8 6 5 10 10 C 1.50699 * 109.47083 * 96.77908 * 8 6 5 11 11 H 1.07995 * 120.00241 * 35.30394 * 10 8 6 12 12 C 1.37884 * 120.00129 * 215.30823 * 10 8 6 13 13 N 1.31514 * 120.00134 * 183.16158 * 12 10 8 14 14 Si 1.86803 * 119.99741 * 3.16246 * 12 10 8 15 15 H 1.48504 * 109.46911 * 86.31520 * 14 12 10 16 16 H 1.48496 * 109.47096 * 206.31579 * 14 12 10 17 17 H 1.48497 * 109.47099 * 326.31440 * 14 12 10 18 18 C 1.50696 * 109.47288 * 216.77862 * 8 6 5 19 19 C 1.38237 * 119.99978 * 110.79496 * 18 8 6 20 20 C 1.38241 * 119.99884 * 179.97438 * 19 18 8 21 21 C 1.38235 * 119.99818 * 0.06366 * 20 19 18 22 22 C 1.38231 * 120.00154 * 359.89530 * 21 20 19 23 23 C 1.38229 * 120.00004 * 290.77041 * 18 8 6 24 24 C 1.39837 * 110.04302 * 359.59288 * 5 4 2 25 25 C 1.39630 * 129.33692 * 180.28567 * 24 5 4 26 26 C 1.37843 * 120.28350 * 180.02562 * 25 24 5 27 27 C 1.38304 * 120.22149 * 359.97438 * 26 25 24 28 28 C 1.38224 * 119.82950 * 359.97438 * 27 26 25 29 29 C 1.38185 * 120.14875 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47332 * 299.09924 * 1 2 3 31 31 H 1.08995 * 109.46870 * 59.10919 * 1 2 3 32 32 H 1.09005 * 109.46695 * 179.10130 * 1 2 3 33 33 H 1.08998 * 110.41915 * 122.46332 * 4 2 1 34 34 H 1.09000 * 110.17795 * 0.32216 * 4 2 1 35 35 H 0.96993 * 119.99990 * 180.02562 * 13 12 10 36 36 H 1.07996 * 120.00055 * 359.69998 * 19 18 8 37 37 H 1.07995 * 119.99838 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.99901 * 180.02562 * 21 20 19 39 39 H 1.08006 * 120.00137 * 180.11315 * 22 21 20 40 40 H 1.07999 * 120.00046 * 359.97438 * 23 18 8 41 41 H 1.07996 * 119.86292 * 359.97438 * 25 24 5 42 42 H 1.07999 * 119.89113 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.08193 * 180.02562 * 27 26 25 44 44 H 1.07998 * 119.92819 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0741 -0.7685 -1.2153 5 7 2.8421 -1.8826 -0.6529 6 6 3.4926 -2.8156 -1.3761 7 8 4.1750 -3.6485 -0.8179 8 6 3.3720 -2.8238 -2.8782 9 1 2.4515 -2.3190 -3.1715 10 6 4.5523 -2.1063 -3.4809 11 1 5.5247 -2.1822 -3.0172 12 6 4.3907 -1.3528 -4.6242 13 7 5.4319 -0.7776 -5.1853 14 14 2.6930 -1.1490 -5.3763 15 1 1.9991 -0.0064 -4.7297 16 1 2.8246 -0.8885 -6.8323 17 1 1.9057 -2.3902 -5.1648 18 6 3.3437 -4.2472 -3.3721 19 6 2.1819 -4.7695 -3.9092 20 6 2.1562 -6.0751 -4.3627 21 6 3.2918 -6.8588 -4.2781 22 6 4.4538 -6.3362 -3.7418 23 6 4.4796 -5.0304 -3.2887 24 6 2.8062 -1.8325 0.7441 25 6 3.4005 -2.6859 1.6759 26 6 3.2412 -2.4597 3.0263 27 6 2.4915 -1.3848 3.4684 28 6 1.9010 -0.5350 2.5520 29 6 2.0580 -0.7579 1.1973 30 1 -0.3634 0.4998 0.8979 31 1 -0.3633 0.5276 -0.8819 32 1 -0.3633 -1.0276 -0.0161 33 1 2.7215 -0.1264 -1.8125 34 1 1.2503 -1.1451 -1.8216 35 1 5.3182 -0.2473 -5.9894 36 1 1.2932 -4.1590 -3.9703 37 1 1.2484 -6.4833 -4.7819 38 1 3.2718 -7.8786 -4.6328 39 1 5.3416 -6.9479 -3.6773 40 1 5.3875 -4.6221 -2.8699 41 1 3.9868 -3.5272 1.3372 42 1 3.7033 -3.1240 3.7415 43 1 2.3685 -1.2094 4.5269 44 1 1.3156 0.3050 2.8955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584292339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:23 Heat of formation + Delta-G solvation = 17.885680 kcal Electronic energy + Delta-G solvation = -27074.901991 eV Core-core repulsion = 23535.610721 eV Total energy + Delta-G solvation = -3539.291271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90752 -38.97199 -37.71634 -36.23685 -33.72629 -33.13897 -31.64416 -30.18140 -29.83940 -29.57463 -27.74474 -26.47214 -23.99262 -22.80791 -22.40423 -21.87930 -20.76508 -20.50412 -18.85888 -17.24393 -16.67299 -16.24089 -15.93744 -15.76465 -15.42918 -14.82521 -14.54936 -14.32770 -13.94673 -13.67722 -13.58727 -13.33211 -12.92514 -12.81360 -12.76655 -12.66211 -12.43624 -12.14009 -12.02631 -11.83869 -11.73131 -11.40650 -11.21669 -11.07373 -11.00055 -10.56941 -10.55009 -10.30645 -10.04459 -9.89225 -9.64843 -9.03833 -8.82371 -8.62182 -8.18206 -7.90793 -7.44523 -6.35397 -4.40021 1.52123 1.60487 2.06631 2.15348 3.05559 3.18610 3.20004 3.26221 3.35628 4.04759 4.15991 4.47322 4.58794 4.61865 4.97160 5.06938 5.17131 5.17352 5.29307 5.44705 5.50248 5.55299 5.59082 5.61857 5.65485 5.72067 5.80136 5.87426 5.92615 5.95456 6.01401 6.12910 6.19827 6.24402 6.25522 6.37280 6.53941 6.64650 6.71517 6.72128 6.77709 6.81567 7.11122 7.19860 7.22331 7.30648 7.54305 7.73084 7.84504 8.18903 8.65318 8.75609 9.20611 10.75640 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011877 B = 0.005258 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.922068 B = 5324.062578 C = 6446.681978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 H 0.094 0.906 4 C 0.104 3.896 5 N -0.556 5.556 6 C 0.547 3.453 7 O -0.525 6.525 8 C 0.042 3.958 9 H 0.058 0.942 10 C -0.509 4.509 11 H 0.084 0.916 12 C 0.086 3.914 13 N -0.878 5.878 14 Si 0.858 3.142 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.253 1.253 18 C -0.045 4.045 19 C -0.131 4.131 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.133 4.133 23 C -0.066 4.066 24 C 0.166 3.834 25 C -0.139 4.139 26 C -0.094 4.094 27 C -0.157 4.157 28 C -0.077 4.077 29 C -0.143 4.143 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.270 0.730 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -0.585 9.550 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 H 0.112 0.888 4 C -0.019 4.019 5 N -0.278 5.278 6 C 0.340 3.660 7 O -0.400 6.400 8 C 0.020 3.980 9 H 0.076 0.924 10 C -0.546 4.546 11 H 0.102 0.898 12 C -0.119 4.119 13 N -0.513 5.513 14 Si 0.684 3.316 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.177 1.177 18 C -0.046 4.046 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.084 4.084 24 C 0.069 3.931 25 C -0.160 4.160 26 C -0.113 4.113 27 C -0.177 4.177 28 C -0.096 4.096 29 C -0.146 4.146 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.695 -0.990 9.474 13.592 hybrid contribution -0.726 0.296 -0.714 1.061 sum -10.421 -0.695 8.759 13.631 Atomic orbital electron populations 1.21799 0.93346 1.02335 1.02066 1.20685 0.96443 0.99476 0.91011 0.88778 1.22264 0.95767 0.87769 0.96062 1.46158 1.50025 1.28103 1.03534 1.21466 0.76351 0.77717 0.90472 1.90549 1.38232 1.38231 1.73023 1.18321 1.00487 0.92149 0.87027 0.92371 1.20468 0.93921 1.29477 1.10765 0.89797 1.24968 0.96797 0.94299 0.95831 1.69847 1.29672 1.31701 1.20123 0.87111 0.85288 0.79711 0.79491 1.19435 1.20765 1.17698 1.20129 0.92705 0.95153 0.96625 1.21036 0.97564 0.95348 1.00984 1.20887 0.97972 0.94438 1.01812 1.20908 0.93694 0.99160 1.01921 1.21090 0.97634 0.96040 1.00304 1.21003 0.98489 0.92582 0.96297 1.18562 0.95588 0.94953 0.84005 1.20989 1.02305 1.00987 0.91730 1.20877 0.98214 0.97481 0.94715 1.20885 1.01077 0.96742 0.98966 1.20250 0.99433 0.99190 0.90721 1.20007 1.02593 0.97788 0.94228 0.92079 0.91945 0.92341 0.88859 0.90325 0.91970 0.87227 0.87201 0.87241 0.86955 0.85681 0.84391 0.85994 0.86217 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.07 37.16 0.34 -1.12 16 2 C -0.06 -0.76 3.61 -91.13 -0.33 -1.09 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.10 1.69 5.99 -3.64 -0.02 1.67 16 5 N -0.56 -10.84 3.13 -112.90 -0.35 -11.19 16 6 C 0.55 12.22 6.74 -10.98 -0.07 12.15 16 7 O -0.53 -12.62 13.59 5.55 0.08 -12.54 16 8 C 0.04 0.95 1.57 -94.08 -0.15 0.81 16 9 H 0.06 1.25 3.77 -51.93 -0.20 1.05 16 10 C -0.51 -13.37 8.07 -34.44 -0.28 -13.65 16 11 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 12 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 13 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 14 Si 0.86 19.16 26.99 -169.99 -4.59 14.57 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.25 -5.35 5.59 56.52 0.32 -5.04 16 18 C -0.05 -1.00 4.66 -104.63 -0.49 -1.48 16 19 C -0.13 -2.60 8.99 -39.58 -0.36 -2.95 16 20 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 21 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 23 C -0.07 -1.43 8.14 -39.58 -0.32 -1.76 16 24 C 0.17 2.98 6.62 -83.57 -0.55 2.43 16 25 C -0.14 -2.42 9.46 -39.21 -0.37 -2.79 16 26 C -0.09 -1.31 10.02 -39.70 -0.40 -1.71 16 27 C -0.16 -1.94 10.06 -39.56 -0.40 -2.34 16 28 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 29 C -0.14 -2.13 5.55 -104.27 -0.58 -2.71 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 1.18 7.23 -51.93 -0.38 0.80 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.11 2.00 7.48 -52.49 -0.39 1.61 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.13 2.91 7.53 -52.49 -0.40 2.52 16 41 H 0.14 2.63 6.29 -52.49 -0.33 2.30 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -30.31 359.40 -10.33 -40.64 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.98 Total: 9.39 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -5.66 Total: -22.09 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.42 Total: -35.39 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.59 Total: 14.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.31 -10.33 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584292339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.525 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds