Wall clock time and date at job start Tue Mar 31 2020 12:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.37054 * 2 1 4 4 C 1.53740 * 110.72676 * 237.69295 * 2 1 3 5 5 N 1.46537 * 105.19753 * 241.45336 * 4 2 1 6 6 C 1.34778 * 124.98235 * 179.85941 * 5 4 2 7 7 O 1.21283 * 120.00145 * 175.10013 * 6 5 4 8 8 C 1.50700 * 119.99738 * 355.09961 * 6 5 4 9 9 H 1.09003 * 109.46925 * 336.78098 * 8 6 5 10 10 C 1.50699 * 109.47083 * 96.77908 * 8 6 5 11 11 H 1.07995 * 120.00241 * 35.30394 * 10 8 6 12 12 C 1.37884 * 120.00129 * 215.30823 * 10 8 6 13 13 N 1.31514 * 120.00134 * 183.16158 * 12 10 8 14 14 Si 1.86803 * 119.99741 * 3.16246 * 12 10 8 15 15 H 1.48504 * 109.46911 * 86.31520 * 14 12 10 16 16 H 1.48496 * 109.47096 * 206.31579 * 14 12 10 17 17 H 1.48497 * 109.47099 * 326.31440 * 14 12 10 18 18 C 1.50696 * 109.47288 * 216.77862 * 8 6 5 19 19 C 1.38237 * 119.99978 * 110.79496 * 18 8 6 20 20 C 1.38241 * 119.99884 * 179.97438 * 19 18 8 21 21 C 1.38235 * 119.99818 * 0.06366 * 20 19 18 22 22 C 1.38231 * 120.00154 * 359.89530 * 21 20 19 23 23 C 1.38229 * 120.00004 * 290.77041 * 18 8 6 24 24 C 1.39837 * 110.04302 * 359.59288 * 5 4 2 25 25 C 1.39630 * 129.33692 * 180.28567 * 24 5 4 26 26 C 1.37843 * 120.28350 * 180.02562 * 25 24 5 27 27 C 1.38304 * 120.22149 * 359.97438 * 26 25 24 28 28 C 1.38224 * 119.82950 * 359.97438 * 27 26 25 29 29 C 1.38185 * 120.14875 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47332 * 299.09924 * 1 2 3 31 31 H 1.08995 * 109.46870 * 59.10919 * 1 2 3 32 32 H 1.09005 * 109.46695 * 179.10130 * 1 2 3 33 33 H 1.08998 * 110.41915 * 122.46332 * 4 2 1 34 34 H 1.09000 * 110.17795 * 0.32216 * 4 2 1 35 35 H 0.96993 * 119.99990 * 180.02562 * 13 12 10 36 36 H 1.07996 * 120.00055 * 359.69998 * 19 18 8 37 37 H 1.07995 * 119.99838 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.99901 * 180.02562 * 21 20 19 39 39 H 1.08006 * 120.00137 * 180.11315 * 22 21 20 40 40 H 1.07999 * 120.00046 * 359.97438 * 23 18 8 41 41 H 1.07996 * 119.86292 * 359.97438 * 25 24 5 42 42 H 1.07999 * 119.89113 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.08193 * 180.02562 * 27 26 25 44 44 H 1.07998 * 119.92819 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0741 -0.7685 -1.2153 5 7 2.8421 -1.8826 -0.6529 6 6 3.4926 -2.8156 -1.3761 7 8 4.1750 -3.6485 -0.8179 8 6 3.3720 -2.8238 -2.8782 9 1 2.4515 -2.3190 -3.1715 10 6 4.5523 -2.1063 -3.4809 11 1 5.5247 -2.1822 -3.0172 12 6 4.3907 -1.3528 -4.6242 13 7 5.4319 -0.7776 -5.1853 14 14 2.6930 -1.1490 -5.3763 15 1 1.9991 -0.0064 -4.7297 16 1 2.8246 -0.8885 -6.8323 17 1 1.9057 -2.3902 -5.1648 18 6 3.3437 -4.2472 -3.3721 19 6 2.1819 -4.7695 -3.9092 20 6 2.1562 -6.0751 -4.3627 21 6 3.2918 -6.8588 -4.2781 22 6 4.4538 -6.3362 -3.7418 23 6 4.4796 -5.0304 -3.2887 24 6 2.8062 -1.8325 0.7441 25 6 3.4005 -2.6859 1.6759 26 6 3.2412 -2.4597 3.0263 27 6 2.4915 -1.3848 3.4684 28 6 1.9010 -0.5350 2.5520 29 6 2.0580 -0.7579 1.1973 30 1 -0.3634 0.4998 0.8979 31 1 -0.3633 0.5276 -0.8819 32 1 -0.3633 -1.0276 -0.0161 33 1 2.7215 -0.1264 -1.8125 34 1 1.2503 -1.1451 -1.8216 35 1 5.3182 -0.2473 -5.9894 36 1 1.2932 -4.1590 -3.9703 37 1 1.2484 -6.4833 -4.7819 38 1 3.2718 -7.8786 -4.6328 39 1 5.3416 -6.9479 -3.6773 40 1 5.3875 -4.6221 -2.8699 41 1 3.9868 -3.5272 1.3372 42 1 3.7033 -3.1240 3.7415 43 1 2.3685 -1.2094 4.5269 44 1 1.3156 0.3050 2.8955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584292339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:23 Heat of formation + Delta-G solvation = 2.178321 kcal Electronic energy + Delta-G solvation = -27075.583113 eV Core-core repulsion = 23535.610721 eV Total energy + Delta-G solvation = -3539.972393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25608 -40.47119 -39.21531 -37.48715 -35.59308 -34.37269 -33.48777 -31.68599 -31.03772 -30.72055 -29.39543 -27.64312 -25.77865 -24.09710 -23.68682 -23.37992 -22.20217 -21.63207 -20.36399 -19.18373 -18.24897 -17.65831 -17.39812 -17.07532 -16.62522 -16.41784 -16.00106 -15.82456 -15.31247 -15.07746 -15.01989 -14.76097 -14.46010 -14.18645 -14.15966 -13.96870 -13.74108 -13.54069 -13.38602 -13.13779 -13.03230 -12.78726 -12.71483 -12.44255 -12.16341 -12.08741 -11.98835 -11.72238 -11.65359 -11.53965 -11.17481 -10.86630 -10.69636 -9.74144 -9.69630 -9.46341 -8.75696 -8.41360 -6.52587 0.32864 0.44398 0.55455 0.63525 1.28752 1.35117 1.44602 1.69124 1.90257 2.26634 2.86988 2.89663 3.06343 3.40437 3.47171 3.90315 3.97608 4.04798 4.13218 4.16775 4.20937 4.28365 4.32205 4.35523 4.39861 4.46914 4.58007 4.60535 4.72213 4.73612 4.76162 4.84557 4.95422 5.07455 5.12663 5.14281 5.26841 5.30150 5.36362 5.40436 5.55087 5.55703 5.62382 5.63810 5.69572 5.88923 6.09808 6.14573 6.23434 6.35699 6.52197 7.07749 7.12268 8.74170 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011877 B = 0.005258 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.922068 B = 5324.062578 C = 6446.681978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 H 0.111 0.889 4 C 0.091 3.909 5 N -0.561 5.561 6 C 0.537 3.463 7 O -0.561 6.561 8 C 0.050 3.950 9 H 0.074 0.926 10 C -0.509 4.509 11 H 0.022 0.978 12 C 0.032 3.968 13 N -0.932 5.932 14 Si 0.921 3.079 15 H -0.238 1.238 16 H -0.285 1.285 17 H -0.231 1.231 18 C -0.075 4.075 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.099 4.099 24 C 0.116 3.884 25 C -0.168 4.168 26 C -0.097 4.097 27 C -0.140 4.140 28 C -0.072 4.072 29 C -0.138 4.138 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.273 0.727 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 -0.312 10.586 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 H 0.129 0.871 4 C -0.030 4.030 5 N -0.283 5.283 6 C 0.329 3.671 7 O -0.439 6.439 8 C 0.028 3.972 9 H 0.092 0.908 10 C -0.547 4.547 11 H 0.040 0.960 12 C -0.168 4.168 13 N -0.570 5.570 14 Si 0.742 3.258 15 H -0.162 1.162 16 H -0.211 1.211 17 H -0.154 1.154 18 C -0.076 4.076 19 C -0.161 4.161 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.118 4.118 24 C 0.021 3.979 25 C -0.189 4.189 26 C -0.116 4.116 27 C -0.159 4.159 28 C -0.090 4.090 29 C -0.141 4.141 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.475 -0.697 10.564 17.933 hybrid contribution 0.867 0.139 -0.858 1.228 sum -13.607 -0.558 9.706 16.723 Atomic orbital electron populations 1.21785 0.90629 1.02347 1.04097 1.20759 0.98450 0.99239 0.88432 0.87104 1.22546 0.95519 0.87097 0.97873 1.46119 1.49675 1.27892 1.04651 1.21419 0.76594 0.78328 0.90724 1.90513 1.39845 1.39979 1.73558 1.18170 0.99023 0.92748 0.87224 0.90842 1.20363 0.92939 1.30324 1.11047 0.95998 1.25877 1.01529 0.93453 0.95920 1.70012 1.32613 1.33282 1.21050 0.86119 0.79969 0.81617 0.78132 1.16169 1.21101 1.15379 1.20151 0.94098 0.94952 0.98393 1.21307 0.96978 0.96975 1.00806 1.21398 0.99628 0.93217 0.99967 1.21397 0.92412 1.00977 0.99933 1.21372 0.99679 0.94721 0.99740 1.20888 0.97522 0.94691 0.98665 1.18939 0.98380 0.97338 0.83247 1.20989 1.03375 1.00827 0.93729 1.21168 0.98443 0.98682 0.93292 1.21400 0.98537 0.94855 1.01094 1.20760 0.98849 1.00005 0.89431 1.20357 1.01409 0.96468 0.95855 0.89674 0.90340 0.93290 0.90717 0.88901 0.91809 0.85433 0.82864 0.82904 0.84951 0.89721 0.87929 0.83836 0.82058 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.07 71.98 0.65 -1.62 16 2 C -0.05 -1.23 3.61 -11.13 -0.04 -1.27 16 3 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.09 2.99 5.99 86.62 0.52 3.51 16 5 N -0.56 -23.18 3.13 -629.48 -1.97 -25.15 16 6 C 0.54 26.14 6.74 87.66 0.59 26.73 16 7 O -0.56 -30.15 13.59 -3.04 -0.04 -30.19 16 8 C 0.05 2.41 1.57 -13.03 -0.02 2.39 16 9 H 0.07 3.21 3.77 -2.39 -0.01 3.20 16 10 C -0.51 -29.21 8.07 25.60 0.21 -29.01 16 11 H 0.02 1.47 8.06 -2.91 -0.02 1.44 16 12 C 0.03 1.81 5.47 84.66 0.46 2.27 16 13 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 14 Si 0.92 39.66 26.99 68.60 1.85 41.52 16 15 H -0.24 -9.04 7.11 99.48 0.71 -8.34 16 16 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.23 -9.04 5.59 99.48 0.56 -8.49 16 18 C -0.07 -3.46 4.66 -19.87 -0.09 -3.55 16 19 C -0.14 -5.45 8.99 22.27 0.20 -5.25 16 20 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 21 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16 22 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 23 C -0.10 -4.68 8.14 22.27 0.18 -4.50 16 24 C 0.12 4.33 6.62 38.28 0.25 4.59 16 25 C -0.17 -6.21 9.46 22.51 0.21 -6.00 16 26 C -0.10 -2.63 10.02 22.19 0.22 -2.40 16 27 C -0.14 -2.93 10.06 22.28 0.22 -2.71 16 28 C -0.07 -1.54 10.04 22.25 0.22 -1.32 16 29 C -0.14 -3.88 5.55 -19.63 -0.11 -3.99 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.09 2.70 7.23 -2.39 -0.02 2.68 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.13 4.31 7.48 -2.91 -0.02 4.29 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.08 4.53 7.53 -2.91 -0.02 4.51 16 41 H 0.10 4.42 6.29 -2.91 -0.02 4.40 16 42 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -76.84 359.40 5.35 -71.49 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.85 Total: 33.16 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 4.36 Total: -34.64 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.67 Total: -81.33 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.04 Total: -30.19 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.85 Total: 41.52 kcal Total: -76.84 5.35 -71.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584292339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.669 kcal (2) G-P(sol) polarization free energy of solvation -76.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds