Wall clock time and date at job start Tue Mar 31 2020 13:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47097 * 2 1 4 4 C 1.53001 * 109.46883 * 119.99301 * 2 1 3 5 5 C 1.50698 * 109.47547 * 294.99811 * 4 2 1 6 6 H 1.07994 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00089 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00006 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00040 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47252 * 89.99511 * 9 7 5 11 11 H 1.48501 * 109.47103 * 209.99399 * 9 7 5 12 12 H 1.48507 * 109.47276 * 329.99351 * 9 7 5 13 13 C 1.52995 * 109.47350 * 239.99282 * 2 1 3 14 14 N 1.46908 * 109.46784 * 63.86830 * 13 2 1 15 15 C 1.47165 * 111.00109 * 195.81395 * 14 13 2 16 16 C 1.52885 * 108.49211 * 165.50396 * 15 14 13 17 17 C 1.50746 * 109.96864 * 50.46911 * 16 15 14 18 18 C 1.39137 * 118.41782 * 163.00229 * 17 16 15 19 19 F 1.35095 * 119.69339 * 359.57527 * 18 17 16 20 20 C 1.38454 * 120.61580 * 179.54681 * 18 17 16 21 21 C 1.37855 * 119.96147 * 359.77296 * 20 18 17 22 22 C 1.39490 * 119.72526 * 0.57563 * 21 20 18 23 23 C 1.47597 * 119.93714 * 179.78825 * 22 21 20 24 24 O 1.21492 * 119.99941 * 179.72408 * 23 22 21 25 25 O 1.34726 * 119.99966 * 359.72374 * 23 22 21 26 26 C 1.37416 * 121.65361 * 342.76577 * 17 16 15 27 27 C 1.46625 * 110.99556 * 72.83197 * 14 13 2 28 28 H 1.09010 * 109.47204 * 305.37468 * 1 2 3 29 29 H 1.09000 * 109.47469 * 65.37314 * 1 2 3 30 30 H 1.08999 * 109.47400 * 185.37907 * 1 2 3 31 31 H 1.09005 * 109.47264 * 55.00553 * 4 2 1 32 32 H 1.09007 * 109.46995 * 174.99992 * 4 2 1 33 33 H 0.97001 * 120.00177 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47191 * 303.87726 * 13 2 1 35 35 H 1.08993 * 109.47733 * 183.87047 * 13 2 1 36 36 H 1.09004 * 109.62924 * 45.80519 * 15 14 13 37 37 H 1.08997 * 109.63494 * 285.20791 * 15 14 13 38 38 H 1.08998 * 109.39361 * 290.31559 * 16 15 14 39 39 H 1.08999 * 109.30664 * 170.56666 * 16 15 14 40 40 H 1.07997 * 120.01999 * 180.02562 * 20 18 17 41 41 H 1.07992 * 120.13437 * 180.33248 * 21 20 18 42 42 H 0.96705 * 117.00219 * 179.97438 * 25 23 22 43 43 H 1.08998 * 109.26973 * 55.57107 * 27 14 13 44 44 H 1.08999 * 109.26761 * 296.10862 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9923 -0.4019 3.7284 8 7 1.6449 0.2776 4.7994 9 14 2.9626 -1.9885 3.9030 10 1 4.4161 -1.6851 3.8793 11 1 2.6144 -2.6426 5.1900 12 1 2.6286 -2.8994 2.7787 13 6 2.0400 -0.7214 -1.2491 14 7 1.6281 0.0229 -2.4468 15 6 1.7617 -0.8065 -3.6551 16 6 0.9949 -0.1326 -4.7931 17 6 1.3995 1.3156 -4.8998 18 6 1.0989 2.0025 -6.0718 19 9 0.4666 1.3622 -7.0794 20 6 1.4411 3.3365 -6.2148 21 6 2.0817 3.9968 -5.1882 22 6 2.3927 3.3123 -4.0132 23 6 3.0826 4.0135 -2.9129 24 8 3.3496 3.4197 -1.8871 25 8 3.4164 5.3119 -3.0460 26 6 2.0460 1.9612 -3.8733 27 6 2.4049 1.2581 -2.5908 28 1 -0.3634 0.5950 0.8380 29 1 -0.3634 0.4282 -0.9342 30 1 -0.3634 -1.0231 0.0963 31 1 1.6054 -1.7197 1.2953 32 1 3.1263 -0.7994 1.2057 33 1 1.8915 -0.0456 5.6801 34 1 1.6211 -1.7270 -1.2844 35 1 3.1277 -0.7819 -1.2151 36 1 1.3446 -1.7961 -3.4680 37 1 2.8142 -0.8945 -3.9244 38 1 -0.0752 -0.1957 -4.5957 39 1 1.2204 -0.6412 -5.7304 40 1 1.2028 3.8605 -7.1286 41 1 2.3451 5.0387 -5.2947 42 1 3.8667 5.7284 -2.2984 43 1 3.4676 1.0158 -2.5988 44 1 2.1931 1.9165 -1.7484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592469738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:29 Heat of formation + Delta-G solvation = -112.267245 kcal Electronic energy + Delta-G solvation = -27457.408933 eV Core-core repulsion = 23481.704583 eV Total energy + Delta-G solvation = -3975.704350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.30619 -41.00880 -39.45279 -37.67000 -36.30151 -35.10675 -32.90376 -32.08803 -31.40254 -29.68109 -27.57814 -26.47206 -24.69502 -24.13847 -23.62026 -21.95146 -21.34870 -19.93659 -18.91888 -18.17672 -17.65848 -17.26816 -16.81613 -16.61861 -16.22399 -15.77592 -15.43542 -15.13853 -14.49572 -14.28214 -14.09844 -14.00938 -13.79989 -13.47831 -13.28979 -13.01700 -12.88779 -12.64196 -12.26992 -12.22876 -11.93675 -11.69271 -11.64628 -11.58841 -11.40501 -10.91623 -10.83656 -10.62292 -10.43717 -10.18140 -9.84741 -9.54611 -9.33648 -9.13523 -9.01258 -8.99088 -8.45587 -8.14516 -5.95955 -3.92124 0.24195 0.85342 2.23334 2.77263 3.25621 3.35274 3.42363 3.46135 3.78038 3.93132 4.22497 4.32158 4.51998 4.62745 4.69046 4.83784 5.10487 5.12847 5.25970 5.37421 5.39127 5.48997 5.53492 5.62486 5.64122 5.70493 5.75831 5.84259 5.85335 5.97406 6.08829 6.13580 6.30812 6.35682 6.46639 6.50511 6.67466 6.92025 7.07870 7.15789 7.24089 7.28635 7.40612 7.58185 7.72236 7.89387 8.64781 9.10791 9.67160 11.17699 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.003465 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.391232 B = 8078.136175 C = 9279.402730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.064 0.936 4 C -0.009 4.009 5 C -0.509 4.509 6 H 0.073 0.927 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.059 3.941 14 N -0.530 5.530 15 C 0.047 3.953 16 C -0.072 4.072 17 C -0.115 4.115 18 C 0.134 3.866 19 F -0.131 7.131 20 C -0.175 4.175 21 C -0.034 4.034 22 C -0.141 4.141 23 C 0.521 3.479 24 O -0.492 6.492 25 O -0.516 6.516 26 C 0.024 3.976 27 C 0.079 3.921 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.417 0.583 43 H 0.059 0.941 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 5.823 -25.402 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 H 0.082 0.918 4 C -0.047 4.047 5 C -0.547 4.547 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.081 4.081 16 C -0.109 4.109 17 C -0.116 4.116 18 C 0.115 3.885 19 F -0.110 7.110 20 C -0.193 4.193 21 C -0.052 4.052 22 C -0.143 4.143 23 C 0.365 3.635 24 O -0.380 6.380 25 O -0.328 6.328 26 C 0.023 3.977 27 C -0.048 4.048 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.276 0.724 43 H 0.076 0.924 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.960 5.558 -25.230 25.853 hybrid contribution 1.582 -0.756 0.406 1.800 sum 2.542 4.802 -24.823 25.411 Atomic orbital electron populations 1.21576 0.95344 1.00692 1.00427 1.21008 0.96272 0.99406 0.92415 0.91795 1.19626 0.95351 0.96139 0.93571 1.21133 1.35065 1.09425 0.89056 0.90848 1.25024 0.95759 0.96872 0.95971 1.69917 1.47440 1.39285 0.97959 0.86814 0.80625 0.84626 0.77401 1.20478 1.21540 1.19083 1.22387 0.97698 0.97164 0.89520 1.62433 1.55253 1.05236 1.02521 1.22188 0.98341 0.97163 0.90403 1.20492 1.01816 0.89611 0.99001 1.19548 1.01982 0.97934 0.92175 1.17966 0.94613 0.90857 0.85096 1.91508 1.79142 1.81851 1.58453 1.21029 1.03751 0.93069 1.01487 1.21196 0.93233 1.00200 0.90547 1.18961 1.06926 0.93663 0.94701 1.20723 0.76402 0.79935 0.86412 1.90961 1.50499 1.66624 1.29915 1.84497 1.73019 1.25848 1.49468 1.19642 0.91907 0.91320 0.94837 1.21575 0.95736 0.92518 0.94957 0.92558 0.93569 0.94241 0.96686 0.97434 0.92916 0.91003 0.94948 0.89753 0.94530 0.89107 0.90131 0.83856 0.83374 0.72371 0.92360 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.86 37.16 0.33 -2.10 16 2 C -0.07 -1.47 2.35 -90.62 -0.21 -1.69 16 3 H 0.06 1.40 6.73 -51.93 -0.35 1.05 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.71 9.03 -34.44 -0.31 -15.02 16 6 H 0.07 2.29 7.30 -52.49 -0.38 1.91 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 9 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.06 0.99 4.37 -3.82 -0.02 0.97 16 14 N -0.53 -7.75 3.95 -236.22 -0.93 -8.69 16 15 C 0.05 0.55 5.57 -3.74 -0.02 0.53 16 16 C -0.07 -0.75 5.60 -27.92 -0.16 -0.91 16 17 C -0.12 -1.31 5.77 -104.57 -0.60 -1.92 16 18 C 0.13 1.36 7.23 -39.17 -0.28 1.07 16 19 F -0.13 -1.33 16.55 2.25 0.04 -1.29 16 20 C -0.17 -1.46 10.01 -39.64 -0.40 -1.86 16 21 C -0.03 -0.29 9.60 -39.26 -0.38 -0.67 16 22 C -0.14 -1.60 5.88 -104.88 -0.62 -2.22 16 23 C 0.52 6.21 8.22 34.55 0.28 6.50 16 24 O -0.49 -7.58 13.89 -19.26 -0.27 -7.85 16 25 O -0.52 -4.33 12.66 -40.56 -0.51 -4.85 16 26 C 0.02 0.30 5.82 -104.24 -0.61 -0.30 16 27 C 0.08 1.16 3.58 -5.17 -0.02 1.14 16 28 H 0.06 1.23 7.11 -51.92 -0.37 0.86 16 29 H 0.05 0.83 7.57 -51.93 -0.39 0.43 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 35 H 0.03 0.54 7.94 -51.93 -0.41 0.13 16 36 H 0.08 0.90 7.78 -51.93 -0.40 0.49 16 37 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.71 7.92 -51.93 -0.41 0.29 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.15 0.95 7.59 -52.49 -0.40 0.55 16 42 H 0.42 1.92 9.11 45.56 0.42 2.33 16 43 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 44 H 0.13 2.22 4.55 -51.93 -0.24 1.99 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -33.51 354.93 -8.81 -42.32 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.38 Total: 0.16 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.20 Total: -14.98 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.16 Total: -36.39 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.78 Total: -12.70 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.51 -8.81 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592469738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.946 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds