Wall clock time and date at job start Tue Mar 31 2020 12:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.75041 * 2 1 4 4 C 1.53367 * 109.61382 * 239.56890 * 2 1 3 5 5 N 1.46958 * 108.63946 * 190.83207 * 4 2 1 6 6 C 1.34780 * 120.59546 * 235.20546 * 5 4 2 7 7 O 1.21608 * 119.99701 * 6.09428 * 6 5 4 8 8 C 1.47400 * 120.00160 * 186.09804 * 6 5 4 9 9 C 1.38234 * 126.45698 * 210.39176 * 8 6 5 10 10 N 1.34243 * 108.41469 * 180.25117 * 9 8 6 11 11 H 0.96998 * 125.39029 * 179.79032 * 10 9 8 12 12 C 1.37823 * 109.20832 * 359.76018 * 10 9 8 13 13 C 1.46630 * 125.85890 * 179.97438 * 12 10 9 14 14 O 1.21602 * 119.99954 * 180.02562 * 13 12 10 15 15 O 1.34873 * 120.00305 * 0.04782 * 13 12 10 16 16 C 1.36448 * 108.27796 * 0.02562 * 12 10 9 17 17 C 1.46964 * 118.81126 * 55.47633 * 5 4 2 18 18 C 1.53808 * 108.39788 * 304.48586 * 17 5 4 19 19 H 1.09003 * 109.67406 * 169.38824 * 18 17 5 20 20 C 1.53002 * 109.74280 * 289.84391 * 18 17 5 21 21 N 1.46958 * 108.58152 * 49.63652 * 18 17 5 22 22 C 1.36939 * 120.59600 * 124.62240 * 21 18 17 23 23 H 1.07994 * 120.00325 * 208.68571 * 22 21 18 24 24 C 1.38816 * 119.99969 * 28.68790 * 22 21 18 25 25 N 1.31618 * 119.99595 * 18.64889 * 24 22 21 26 26 Si 1.86793 * 120.00251 * 198.64868 * 24 22 21 27 27 H 1.48504 * 109.47297 * 94.79145 * 26 24 22 28 28 H 1.48498 * 109.47343 * 214.78923 * 26 24 22 29 29 H 1.48501 * 109.47282 * 334.79356 * 26 24 22 30 30 H 1.09001 * 109.47140 * 180.42831 * 1 2 3 31 31 H 1.08999 * 109.47359 * 300.42974 * 1 2 3 32 32 H 1.09003 * 109.46889 * 60.43240 * 1 2 3 33 33 H 1.09000 * 109.60876 * 71.08500 * 4 2 1 34 34 H 1.08997 * 109.74751 * 310.66292 * 4 2 1 35 35 H 1.08000 * 125.79400 * 0.02562 * 9 8 6 36 36 H 0.96697 * 117.00476 * 179.97438 * 15 13 12 37 37 H 1.08004 * 126.49264 * 179.97438 * 16 12 10 38 38 H 1.09003 * 109.60937 * 64.27230 * 17 5 4 39 39 H 1.09002 * 109.60926 * 184.77864 * 17 5 4 40 40 H 1.09000 * 109.47597 * 179.15306 * 20 18 17 41 41 H 1.09000 * 109.47716 * 299.16329 * 20 18 17 42 42 H 1.09007 * 109.46535 * 59.16103 * 20 18 17 43 43 H 0.97006 * 119.99652 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7317 -1.2457 5 7 3.4908 -0.9489 -1.0987 6 6 4.3492 -0.5134 -2.0421 7 8 3.9430 0.1607 -2.9691 8 6 5.7803 -0.8542 -1.9502 9 6 6.8376 -0.0910 -2.4091 10 7 7.9794 -0.7452 -2.1437 11 1 8.8706 -0.4318 -2.3640 12 6 7.6848 -1.9320 -1.5081 13 6 8.6601 -2.9286 -1.0545 14 8 8.2805 -3.9437 -0.5030 15 8 9.9783 -2.7192 -1.2485 16 6 6.3298 -2.0210 -1.3743 17 6 3.9835 -1.6549 0.0923 18 6 3.4692 -0.9182 1.3407 19 1 3.6602 -1.5221 2.2279 20 6 4.1800 0.4300 1.4747 21 7 2.0232 -0.7010 1.1938 22 6 1.1509 -1.1443 2.1518 23 1 0.1411 -1.4134 1.8797 24 6 1.5647 -1.2478 3.4728 25 7 2.6335 -0.5967 3.8805 26 14 0.6049 -2.3111 4.6717 27 1 1.2211 -3.6605 4.7396 28 1 0.6319 -1.6864 6.0187 29 1 -0.8014 -2.4317 4.2101 30 1 -0.3633 -1.0276 0.0077 31 1 -0.3634 0.5205 0.8861 32 1 -0.3633 0.5071 -0.8939 33 1 1.8540 -0.1253 -2.1311 34 1 1.5387 -1.6921 -1.3441 35 1 6.7582 0.8670 -2.9013 36 1 10.5829 -3.4043 -0.9321 37 1 5.7813 -2.8319 -0.9181 38 1 3.6121 -2.6797 0.0900 39 1 5.0735 -1.6583 0.0907 40 1 3.8017 0.9548 2.3520 41 1 5.2522 0.2664 1.5835 42 1 3.9926 1.0296 0.5839 43 1 2.9228 -0.6693 4.8035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604779520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:32 Heat of formation + Delta-G solvation = -62.073450 kcal Electronic energy + Delta-G solvation = -28261.598952 eV Core-core repulsion = 24307.991130 eV Total energy + Delta-G solvation = -3953.607822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74479 -40.99628 -40.42344 -38.71873 -37.13321 -35.67584 -34.51934 -32.95284 -32.47387 -30.91878 -29.70453 -27.89357 -27.20587 -25.71404 -25.01217 -23.32600 -22.65762 -21.53922 -20.93162 -20.39285 -19.39143 -18.74001 -17.85047 -17.43947 -16.93021 -16.77990 -16.70874 -16.48243 -16.08700 -15.77193 -15.32756 -15.20737 -14.98329 -14.67612 -14.44187 -14.33334 -14.18114 -13.57049 -13.48431 -13.32968 -12.97415 -12.82692 -12.78920 -12.65443 -12.40120 -12.29952 -12.25703 -11.98271 -11.95578 -11.74027 -11.51645 -11.28350 -10.90455 -10.43765 -10.12576 -9.72164 -9.47974 -8.48666 -7.76794 -5.21232 0.11741 0.81009 1.50602 1.54078 1.60431 1.75190 1.90794 2.01981 2.23612 2.45282 2.59105 3.36847 3.57727 3.71606 4.02610 4.08798 4.15749 4.20529 4.29397 4.41195 4.53672 4.61069 4.64576 4.71737 4.74404 4.83657 4.86407 4.90604 4.96900 5.12658 5.21303 5.28567 5.39247 5.39270 5.49453 5.55416 5.60425 5.76341 5.81805 5.89833 6.33472 6.48956 6.59253 6.90234 7.24699 7.26994 7.93584 8.47274 9.27583 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.004283 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.994259 B = 6536.249377 C = 7896.676654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 H 0.012 0.988 4 C 0.109 3.891 5 N -0.592 5.592 6 C 0.585 3.415 7 O -0.589 6.589 8 C -0.257 4.257 9 C 0.133 3.867 10 N -0.493 5.493 11 H 0.447 0.553 12 C -0.056 4.056 13 C 0.563 3.437 14 O -0.540 6.540 15 O -0.506 6.506 16 C -0.072 4.072 17 C 0.090 3.910 18 C 0.177 3.823 19 H 0.073 0.927 20 C -0.121 4.121 21 N -0.595 5.595 22 C -0.252 4.252 23 H 0.074 0.926 24 C -0.042 4.042 25 N -0.921 5.921 26 Si 0.954 3.046 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.271 1.271 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.218 0.782 36 H 0.438 0.562 37 H 0.153 0.847 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.023 0.977 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.120 -0.839 -12.734 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.046 3.954 3 H 0.029 0.971 4 C -0.015 4.015 5 N -0.322 5.322 6 C 0.376 3.624 7 O -0.472 6.472 8 C -0.266 4.266 9 C -0.012 4.012 10 N -0.089 5.089 11 H 0.290 0.710 12 C -0.165 4.165 13 C 0.409 3.591 14 O -0.430 6.430 15 O -0.321 6.321 16 C -0.098 4.098 17 C -0.034 4.034 18 C 0.070 3.930 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.318 5.318 22 C -0.382 4.382 23 H 0.091 0.909 24 C -0.238 4.238 25 N -0.567 5.567 26 Si 0.784 3.216 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.301 0.699 37 H 0.171 0.829 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.792 -0.495 -13.033 18.982 hybrid contribution 0.117 -0.796 1.409 1.622 sum 13.909 -1.291 -11.624 18.172 Atomic orbital electron populations 1.21664 0.93734 1.01805 1.01174 1.20884 0.94598 0.92995 0.86903 0.97061 1.22104 0.79673 1.00723 0.98980 1.47822 1.07062 1.56389 1.20904 1.17749 0.85472 0.78270 0.80940 1.90691 1.79555 1.41528 1.35447 1.19480 0.92729 0.99950 1.14449 1.22731 0.82860 0.98474 0.97119 1.41620 1.10077 1.14541 1.42665 0.70993 1.18772 0.92438 0.91468 1.13805 1.19359 0.81583 0.83413 0.74750 1.90990 1.81121 1.28992 1.41917 1.84488 1.16624 1.53957 1.76996 1.21401 0.91831 0.98356 0.98174 1.22906 1.00356 0.95266 0.84838 1.20726 0.82980 0.94713 0.94620 0.90935 1.21753 0.98111 0.98927 0.99186 1.44394 1.02174 1.64996 1.20223 1.19465 0.95979 1.35737 0.87033 0.90858 1.25618 0.99393 1.00736 0.98079 1.70169 1.28075 1.42837 1.15647 0.85450 0.78941 0.78736 0.78464 1.21788 1.22850 1.19628 0.92496 0.93589 0.90925 0.89567 0.91392 0.76597 0.69861 0.82900 0.92060 0.87679 0.94057 0.93787 0.95769 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.94 71.98 0.57 -4.01 16 2 C 0.15 6.31 3.23 45.02 0.15 6.46 16 3 H 0.01 0.53 7.40 -2.39 -0.02 0.51 16 4 C 0.11 4.02 5.91 86.42 0.51 4.53 16 5 N -0.59 -21.55 2.58 -821.08 -2.12 -23.67 16 6 C 0.58 20.30 7.62 86.66 0.66 20.96 16 7 O -0.59 -23.00 16.44 -4.06 -0.07 -23.07 16 8 C -0.26 -7.01 5.54 -20.13 -0.11 -7.12 16 9 C 0.13 2.45 11.84 84.32 1.00 3.45 16 10 N -0.49 -7.04 6.01 -183.40 -1.10 -8.14 16 11 H 0.45 2.94 8.96 -92.71 -0.83 2.11 16 12 C -0.06 -1.17 7.02 39.97 0.28 -0.89 16 13 C 0.56 11.50 8.31 70.01 0.58 12.09 16 14 O -0.54 -15.13 17.65 19.50 0.34 -14.79 16 15 O -0.51 -5.74 13.44 -57.87 -0.78 -6.52 16 16 C -0.07 -1.89 8.10 22.59 0.18 -1.70 16 17 C 0.09 3.34 4.88 86.56 0.42 3.76 16 18 C 0.18 7.98 2.35 45.18 0.11 8.09 16 19 H 0.07 3.76 6.06 -2.39 -0.01 3.75 16 20 C -0.12 -5.33 8.96 71.98 0.65 -4.68 16 21 N -0.59 -28.27 2.68 -649.91 -1.74 -30.01 16 22 C -0.25 -13.05 8.59 84.03 0.72 -12.33 16 23 H 0.07 3.71 6.21 -2.91 -0.02 3.69 16 24 C -0.04 -2.25 4.87 84.86 0.41 -1.84 16 25 N -0.92 -51.68 10.24 21.65 0.22 -51.45 16 26 Si 0.95 43.87 29.59 68.60 2.03 45.90 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 H 0.06 2.04 7.32 -2.39 -0.02 2.03 16 31 H 0.04 1.82 7.72 -2.39 -0.02 1.80 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 3.09 6.99 -2.39 -0.02 3.07 16 34 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 35 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.44 1.24 9.11 -74.06 -0.67 0.57 16 37 H 0.15 4.28 6.53 -2.91 -0.02 4.26 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.11 3.51 4.06 -2.39 -0.01 3.50 16 40 H 0.04 2.09 7.18 -2.39 -0.02 2.08 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 42 H 0.02 1.03 7.02 -2.38 -0.02 1.01 16 43 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 Total: -1.00 -72.50 348.58 2.49 -70.01 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.42 Total: 14.98 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 6.13 Total: 26.76 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -4.75 Total: -113.28 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.50 Total: -44.38 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.50 2.49 -70.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604779520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.940 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds