Wall clock time and date at job start Tue Mar 31 2020 13:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46638 * 2 1 4 4 C 1.53002 * 109.47184 * 240.00186 * 2 1 3 5 5 N 1.46503 * 109.46930 * 184.99545 * 4 2 1 6 6 C 1.46493 * 119.99951 * 269.99468 * 5 4 2 7 7 C 1.36940 * 119.99681 * 89.99974 * 5 4 2 8 8 H 1.07995 * 120.00269 * 342.69487 * 7 5 4 9 9 C 1.38811 * 119.99490 * 162.97318 * 7 5 4 10 10 N 1.31620 * 120.00494 * 345.47584 * 9 7 5 11 11 Si 1.86802 * 119.99865 * 165.48174 * 9 7 5 12 12 H 1.48498 * 109.46893 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47486 * 119.99706 * 11 9 7 14 14 H 1.48502 * 109.47108 * 239.99872 * 11 9 7 15 15 N 1.46502 * 109.47717 * 119.99470 * 2 1 3 16 16 C 1.34771 * 120.00070 * 275.00829 * 15 2 1 17 17 O 1.21552 * 120.00304 * 359.97438 * 16 15 2 18 18 C 1.47881 * 119.99787 * 179.97438 * 16 15 2 19 19 C 1.39285 * 119.60664 * 179.72607 * 18 16 15 20 20 C 1.38539 * 119.12159 * 179.79569 * 19 18 16 21 21 C 1.38912 * 118.53480 * 0.51511 * 20 19 18 22 22 C 1.39730 * 119.43283 * 359.61634 * 21 20 19 23 23 N 1.31997 * 120.36390 * 0.20443 * 22 21 20 24 24 O 1.35990 * 120.43994 * 180.44879 * 22 21 20 25 25 C 1.43136 * 116.72203 * 342.44006 * 24 22 21 26 26 C 1.53452 * 108.34430 * 46.50804 * 25 24 22 27 27 O 1.35781 * 119.57460 * 179.46566 * 21 20 19 28 28 H 1.08997 * 109.47284 * 299.99898 * 1 2 3 29 29 H 1.08994 * 109.47488 * 60.00152 * 1 2 3 30 30 H 1.09005 * 109.46638 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47377 * 64.99608 * 4 2 1 32 32 H 1.08997 * 109.46588 * 304.99393 * 4 2 1 33 33 H 1.08998 * 109.47678 * 265.06547 * 6 5 4 34 34 H 1.08998 * 109.47217 * 25.06615 * 6 5 4 35 35 H 1.09008 * 109.47182 * 145.06584 * 6 5 4 36 36 H 0.96998 * 120.00313 * 180.02562 * 10 9 7 37 37 H 0.96999 * 119.99208 * 94.99883 * 15 2 1 38 38 H 1.08000 * 120.43697 * 0.05629 * 19 18 16 39 39 H 1.08004 * 120.73008 * 180.22116 * 20 19 18 40 40 H 1.08999 * 109.68280 * 286.79859 * 25 24 22 41 41 H 1.08997 * 109.72053 * 166.24153 * 25 24 22 42 42 H 1.09004 * 109.71690 * 180.46851 * 26 25 24 43 43 H 1.09000 * 109.71506 * 59.83077 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.3342 0.2342 -1.7614 7 6 4.0850 -1.9157 -0.6023 8 1 3.5080 -2.5495 0.0547 9 6 5.4213 -2.2021 -0.8459 10 7 6.0484 -1.6169 -1.8443 11 14 6.3294 -3.4182 0.2430 12 1 5.4070 -3.9326 1.2869 13 1 6.8233 -4.5493 -0.5827 14 1 7.4801 -2.7389 0.8910 15 7 2.0185 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8583 1.1614 2.4116 18 6 2.6396 -0.7153 3.5647 19 6 2.7749 -0.0111 4.7588 20 6 3.2332 -0.6752 5.8849 21 6 3.5522 -2.0228 5.7767 22 6 3.3961 -2.6689 4.5476 23 7 2.9531 -2.0048 3.4963 24 8 3.6936 -3.9898 4.4208 25 6 4.5121 -4.5662 5.4439 26 6 3.9656 -4.1219 6.8072 27 8 4.0136 -2.6917 6.8645 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -0.1584 -2.1370 32 1 1.6054 -1.7198 -1.2951 33 1 4.6151 -0.0330 -2.7801 34 1 3.7754 1.1699 -1.7722 35 1 5.2330 0.3547 -1.1565 36 1 6.9820 -1.8173 -2.0147 37 1 2.2492 -1.6316 1.1526 38 1 2.5218 1.0377 4.8071 39 1 3.3444 -0.1554 6.8251 40 1 5.5396 -4.2210 5.3299 41 1 4.4797 -5.6533 5.3718 42 1 4.5789 -4.5425 7.6041 43 1 2.9352 -4.4598 6.9182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699458573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:09 Heat of formation + Delta-G solvation = -58.418752 kcal Electronic energy + Delta-G solvation = -28071.545183 eV Core-core repulsion = 24118.095841 eV Total energy + Delta-G solvation = -3953.449342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65082 -41.02604 -39.38946 -38.52528 -38.01955 -35.80566 -33.71584 -33.02378 -32.54856 -31.52605 -29.85141 -28.07641 -27.38834 -26.44475 -25.48254 -23.85404 -23.05954 -21.93032 -21.32099 -20.09444 -19.10260 -19.03418 -18.55857 -17.93799 -17.05542 -17.01398 -16.90774 -16.15768 -15.98344 -15.67267 -15.57770 -15.55557 -15.39296 -14.90492 -14.66976 -14.56349 -14.41815 -13.86370 -13.75237 -13.48449 -13.10868 -12.86301 -12.75455 -12.71848 -12.58117 -12.48652 -12.19592 -12.19144 -12.01039 -11.90742 -11.77821 -11.32224 -10.68878 -10.61137 -10.48571 -9.96760 -9.42966 -8.80981 -7.81333 -5.22299 -0.51963 0.01900 1.37947 1.40741 1.49260 1.54459 1.67686 1.92735 2.27867 2.49932 2.70335 2.88420 3.32711 3.36194 3.44399 3.69603 3.83026 3.86360 3.97799 4.06440 4.11999 4.17634 4.41415 4.48857 4.50294 4.53469 4.58009 4.76270 4.82601 4.85314 4.88929 5.00221 5.13004 5.17020 5.33192 5.45503 5.46947 5.60500 5.66581 5.74902 5.97289 6.31264 6.50493 6.76859 7.14963 7.24665 7.88665 8.30474 9.22987 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011051 B = 0.005461 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.074052 B = 5125.646733 C = 6940.548618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.118 3.882 3 H 0.060 0.940 4 C 0.141 3.859 5 N -0.616 5.616 6 C 0.181 3.819 7 C -0.228 4.228 8 H 0.074 0.926 9 C -0.057 4.057 10 N -0.941 5.941 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.291 1.291 14 H -0.302 1.302 15 N -0.677 5.677 16 C 0.567 3.433 17 O -0.572 6.572 18 C 0.066 3.934 19 C -0.103 4.103 20 C -0.072 4.072 21 C 0.036 3.964 22 C 0.243 3.757 23 N -0.469 5.469 24 O -0.320 6.320 25 C 0.011 3.989 26 C 0.018 3.982 27 O -0.301 6.301 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.006 0.994 34 H 0.024 0.976 35 H 0.014 0.986 36 H 0.244 0.756 37 H 0.409 0.591 38 H 0.172 0.828 39 H 0.193 0.807 40 H 0.078 0.922 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -3.679 19.003 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.079 0.921 4 C 0.014 3.986 5 N -0.338 5.338 6 C 0.036 3.964 7 C -0.359 4.359 8 H 0.092 0.908 9 C -0.251 4.251 10 N -0.589 5.589 11 Si 0.778 3.222 12 H -0.189 1.189 13 H -0.218 1.218 14 H -0.230 1.230 15 N -0.326 5.326 16 C 0.353 3.647 17 O -0.453 6.453 18 C -0.071 4.071 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.013 4.013 22 C 0.060 3.940 23 N -0.193 5.193 24 O -0.230 6.230 25 C -0.064 4.064 26 C -0.056 4.056 27 O -0.214 6.214 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.246 0.754 38 H 0.189 0.811 39 H 0.210 0.790 40 H 0.096 0.904 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.910 -3.428 18.196 20.135 hybrid contribution 1.391 -0.847 0.766 1.800 sum -6.518 -4.275 18.962 20.502 Atomic orbital electron populations 1.22015 0.93200 1.02606 1.02671 1.21871 0.94701 0.96733 0.85535 0.92149 1.21268 0.83116 0.99369 0.94826 1.44138 1.01051 1.20648 1.67991 1.20508 0.92417 0.87405 0.96103 1.19411 0.94015 1.03473 1.18954 0.90788 1.25480 0.99162 1.01479 0.98971 1.70253 1.10352 1.48037 1.30304 0.85439 0.78655 0.78937 0.79203 1.18928 1.21833 1.23027 1.45945 1.63198 1.14837 1.08616 1.17913 0.77733 0.85785 0.83311 1.90698 1.53452 1.15627 1.85492 1.20858 1.02318 0.88423 0.95497 1.22094 0.97286 1.02589 0.90402 1.21255 0.96927 0.90571 1.00995 1.20004 1.00547 0.94482 0.86286 1.19546 0.99519 0.86372 0.88558 1.66512 1.12990 1.09183 1.30568 1.86239 1.67550 1.18270 1.50924 1.24215 0.93794 1.02358 0.86042 1.24120 1.05112 0.77088 0.99314 1.86251 1.78473 1.21696 1.34958 0.93327 0.89492 0.91707 0.90637 0.92229 0.97591 0.95753 0.96748 0.94693 0.75367 0.81083 0.79014 0.90385 0.81960 0.81300 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.48 71.98 0.68 -3.46 16 2 C 0.12 4.32 2.88 44.99 0.13 4.45 16 3 H 0.06 2.45 7.58 -2.38 -0.02 2.43 16 4 C 0.14 5.51 5.30 86.38 0.46 5.97 16 5 N -0.62 -30.87 2.82 -726.95 -2.05 -32.92 16 6 C 0.18 9.31 8.97 127.77 1.15 10.45 16 7 C -0.23 -12.50 8.81 84.03 0.74 -11.76 16 8 H 0.07 3.96 6.40 -2.91 -0.02 3.94 16 9 C -0.06 -3.29 5.09 84.86 0.43 -2.86 16 10 N -0.94 -57.30 10.45 21.65 0.23 -57.07 16 11 Si 0.95 47.46 29.58 68.60 2.03 49.49 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 14 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 15 N -0.68 -26.96 4.48 -445.37 -1.99 -28.95 16 16 C 0.57 22.65 7.76 86.80 0.67 23.32 16 17 O -0.57 -24.15 15.97 -3.88 -0.06 -24.22 16 18 C 0.07 2.38 6.74 41.79 0.28 2.66 16 19 C -0.10 -2.85 9.62 22.59 0.22 -2.64 16 20 C -0.07 -1.62 10.08 22.50 0.23 -1.40 16 21 C 0.04 0.93 6.51 22.79 0.15 1.08 16 22 C 0.24 7.93 7.55 85.03 0.64 8.57 16 23 N -0.47 -17.84 9.55 -297.43 -2.84 -20.67 16 24 O -0.32 -9.71 10.51 -81.37 -0.85 -10.57 16 25 C 0.01 0.19 7.24 72.13 0.52 0.71 16 26 C 0.02 0.22 7.26 72.13 0.52 0.74 16 27 O -0.30 -5.95 10.42 -79.04 -0.82 -6.77 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 32 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 33 H 0.01 0.32 7.51 -2.39 -0.02 0.30 16 34 H 0.02 1.08 8.03 -2.39 -0.02 1.06 16 35 H 0.01 0.80 6.95 -2.38 -0.02 0.78 16 36 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.41 17.19 5.90 -92.71 -0.55 16.64 16 38 H 0.17 4.20 7.63 -2.91 -0.02 4.18 16 39 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.17 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.10 357.86 0.95 -76.15 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.49 Total: 19.68 kcal Atomic # 6 Polarization: 29.03 SS G_CDS: 6.82 Total: 35.85 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -6.66 Total: -139.62 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.74 Total: -41.55 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -77.10 0.95 -76.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699458573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.733 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds