Wall clock time and date at job start Tue Mar 31 2020 13:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21280 * 119.99850 * 2 1 4 4 N 1.34772 * 119.99546 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99772 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47610 * 180.02562 * 5 4 2 7 7 C 1.52990 * 109.47336 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99688 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00226 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49455 * 11 9 8 13 13 C 1.38908 * 120.00352 * 215.12379 * 12 11 9 14 14 C 1.38003 * 120.00179 * 180.02562 * 13 12 11 15 15 C 1.38899 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99801 * 179.97438 * 15 14 13 17 17 C 1.34820 * 117.00252 * 5.33726 * 16 15 14 18 18 H 1.08001 * 119.99593 * 354.96888 * 17 16 15 19 19 C 1.38634 * 120.00020 * 174.96470 * 17 16 15 20 20 N 1.31572 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47182 * 60.00498 * 21 19 17 23 23 H 1.48501 * 109.46873 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47501 * 300.00326 * 21 19 17 25 25 C 1.38902 * 120.00661 * 0.26478 * 15 14 13 26 26 C 1.38008 * 119.99473 * 359.45951 * 25 15 14 27 27 H 1.09004 * 109.46965 * 270.00064 * 1 2 3 28 28 H 1.08999 * 109.47197 * 30.00066 * 1 2 3 29 29 H 1.09003 * 109.46997 * 150.00196 * 1 2 3 30 30 H 0.96996 * 120.00731 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.46879 * 59.99890 * 5 4 2 32 32 H 1.09009 * 109.47095 * 300.00413 * 5 4 2 33 33 H 1.09002 * 109.46622 * 59.99872 * 6 5 4 34 34 H 1.09000 * 109.47086 * 300.00481 * 6 5 4 35 35 H 1.09002 * 109.47238 * 60.00410 * 7 6 5 36 36 H 1.09000 * 109.47557 * 300.00353 * 7 6 5 37 37 H 0.96993 * 120.00341 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99675 * 355.48546 * 11 9 8 39 39 H 1.07998 * 119.99489 * 359.97438 * 13 12 11 40 40 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 41 41 H 0.97004 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.00563 * 179.70790 * 25 15 14 43 43 H 1.08001 * 120.00490 * 180.27632 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1559 -2.6097 0.0001 7 6 5.6858 -2.6097 -0.0012 8 7 6.1742 -3.9909 -0.0004 9 6 7.4993 -4.2372 -0.0008 10 8 8.2894 -3.3130 -0.0012 11 7 7.9486 -5.5079 -0.0006 12 6 9.3216 -5.7651 -0.0962 13 6 9.7730 -6.8777 -0.7947 14 6 11.1262 -7.1314 -0.8884 15 6 12.0370 -6.2745 -0.2840 16 8 13.3685 -6.5244 -0.3758 17 6 13.7452 -7.5555 -1.1586 18 1 12.9982 -8.1897 -1.6127 19 6 15.0913 -7.8015 -1.3806 20 7 16.0013 -7.0291 -0.8269 21 14 15.6132 -9.2305 -2.4645 22 1 15.0522 -9.0485 -3.8274 23 1 17.0954 -9.2781 -2.5411 24 1 15.1068 -10.5011 -1.8864 25 6 11.5856 -5.1651 0.4196 26 6 10.2326 -4.9082 0.5086 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6959 -2.0072 0.0005 31 1 4.0095 -0.6529 0.8894 32 1 4.0089 -0.6539 -0.8906 33 1 3.7922 -3.1237 -0.8897 34 1 3.7929 -3.1234 0.8903 35 1 6.0499 -2.0956 0.8884 36 1 6.0485 -2.0961 -0.8916 37 1 5.5439 -4.7282 0.0003 38 1 7.3207 -6.2442 0.0659 39 1 9.0647 -7.5447 -1.2636 40 1 11.4772 -7.9968 -1.4311 41 1 16.9432 -7.2014 -0.9820 42 1 12.2936 -4.5015 0.8936 43 1 9.8817 -4.0433 1.0518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043558627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:25 Heat of formation + Delta-G solvation = -68.534361 kcal Electronic energy + Delta-G solvation = -24881.281197 eV Core-core repulsion = 20927.393209 eV Total energy + Delta-G solvation = -3953.887988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36037 -39.99929 -38.77865 -37.02099 -36.21674 -34.69516 -33.95324 -32.23784 -31.88927 -30.17711 -29.95916 -27.80009 -25.65420 -25.08300 -22.45235 -22.19004 -21.65994 -21.00171 -20.50262 -18.54390 -17.79730 -17.40290 -17.17585 -16.81638 -16.55675 -16.29080 -15.67112 -15.05983 -14.90460 -14.53965 -14.47631 -14.15380 -13.88023 -13.58232 -13.51622 -13.28267 -13.19850 -12.79081 -12.61215 -12.48294 -12.43759 -12.12400 -11.82852 -11.63883 -11.53793 -11.43966 -10.99699 -10.73221 -10.47123 -10.38226 -9.95511 -9.62639 -9.60791 -9.24275 -9.20697 -8.66860 -8.16757 -6.88833 -6.41404 -3.99722 2.17495 2.18678 2.26424 2.51257 2.85377 3.14162 3.15082 3.18695 3.32239 3.99153 4.13307 4.29359 4.40887 4.45280 4.53507 4.61955 4.71399 4.86179 5.01480 5.12363 5.15168 5.26567 5.37349 5.40133 5.56972 5.59586 5.62089 5.81909 5.88098 6.16354 6.21751 6.26527 6.31697 6.68910 6.87262 6.94416 6.96812 7.14251 7.25224 7.27891 7.46252 7.73306 7.83461 8.02194 8.03898 8.66160 9.03767 9.74812 10.76561 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.046763 B = 0.001577 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.621603 B =17750.141694 C =18004.511308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.545 6.545 4 N -0.733 5.733 5 C 0.119 3.881 6 C -0.142 4.142 7 C 0.142 3.858 8 N -0.750 5.750 9 C 0.699 3.301 10 O -0.573 6.573 11 N -0.674 5.674 12 C 0.052 3.948 13 C -0.092 4.092 14 C -0.220 4.220 15 C 0.146 3.854 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.178 4.178 26 C -0.067 4.067 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.270 0.730 42 H 0.121 0.879 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.714 3.953 1.560 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.422 6.422 4 N -0.386 5.386 5 C -0.005 4.005 6 C -0.180 4.180 7 C 0.017 3.983 8 N -0.407 5.407 9 C 0.399 3.601 10 O -0.450 6.450 11 N -0.322 5.322 12 C -0.041 4.041 13 C -0.112 4.112 14 C -0.240 4.240 15 C 0.092 3.908 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.198 4.198 26 C -0.087 4.087 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.231 0.769 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -29.084 5.742 1.655 29.692 hybrid contribution -0.694 -1.999 -0.613 2.203 sum -29.778 3.743 1.042 30.030 Atomic orbital electron populations 1.21890 0.91501 1.04981 1.04866 1.20856 0.90707 0.83413 0.75522 1.90759 1.70840 1.31417 1.49155 1.46076 1.07431 1.08902 1.76142 1.21231 0.79609 0.96344 1.03317 1.21964 0.95751 0.96806 1.03515 1.20991 0.91706 0.82411 1.03180 1.45026 1.05477 1.08585 1.81593 1.15949 0.82275 0.83647 0.78227 1.90945 1.54222 1.43216 1.56579 1.42283 1.06870 1.05942 1.77080 1.17039 0.80866 1.00032 1.06167 1.20443 0.95321 0.97194 0.98284 1.20946 0.92095 1.03157 1.07780 1.19418 0.85168 0.92729 0.93484 1.83994 1.16659 1.47768 1.59682 1.21259 0.92318 1.06107 1.27165 0.89165 1.25275 0.94614 0.98845 0.97782 1.70040 1.01203 1.37135 1.41360 0.85792 0.78001 0.79980 0.79696 1.19547 1.20309 1.19557 1.20158 0.94915 0.98502 1.06237 1.20777 0.91494 0.98672 0.97770 0.88777 0.88791 0.90154 0.76445 0.90855 0.90839 0.90464 0.90471 0.91120 0.91093 0.77257 0.76900 0.87273 0.85146 0.92003 0.86147 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.30 36.01 0.37 -0.15 16 2 C 0.51 3.64 7.94 -10.98 -0.09 3.55 16 3 O -0.54 -6.77 17.10 5.56 0.10 -6.67 16 4 N -0.73 -3.46 5.56 -60.29 -0.33 -3.80 16 5 C 0.12 0.70 5.67 -4.04 -0.02 0.67 16 6 C -0.14 -0.57 5.44 -26.74 -0.15 -0.72 16 7 C 0.14 1.11 5.67 -4.05 -0.02 1.08 16 8 N -0.75 -6.59 5.56 -65.23 -0.36 -6.95 16 9 C 0.70 9.82 8.41 -86.91 -0.73 9.09 16 10 O -0.57 -10.74 13.78 5.29 0.07 -10.67 16 11 N -0.67 -9.05 5.34 -14.18 -0.08 -9.12 16 12 C 0.05 0.93 6.30 -83.62 -0.53 0.40 16 13 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 14 C -0.22 -4.73 9.16 -39.42 -0.36 -5.09 16 15 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 16 O -0.18 -5.13 9.76 -0.03 0.00 -5.13 16 17 C -0.39 -10.99 9.48 30.88 0.29 -10.69 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 21 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.18 -3.99 9.99 -39.42 -0.39 -4.39 16 26 C -0.07 -1.35 8.69 -39.41 -0.34 -1.69 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.40 0.60 8.47 -40.82 -0.35 0.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 2.08 8.49 -40.82 -0.35 1.73 16 38 H 0.40 3.70 8.84 -40.82 -0.36 3.34 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.76 5.63 -52.48 -0.30 2.47 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 43 H 0.13 2.60 6.23 -52.49 -0.33 2.27 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -38.06 371.36 -7.73 -45.78 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.73 Total: 5.87 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.72 Total: -5.67 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.01 Total: -44.60 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.06 -7.73 -45.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.751 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds