Wall clock time and date at job start Tue Mar 31 2020 13:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21280 * 119.99850 * 2 1 4 4 N 1.34772 * 119.99546 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99772 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47610 * 180.02562 * 5 4 2 7 7 C 1.52990 * 109.47336 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99688 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00226 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49455 * 11 9 8 13 13 C 1.38908 * 120.00352 * 215.12379 * 12 11 9 14 14 C 1.38003 * 120.00179 * 180.02562 * 13 12 11 15 15 C 1.38899 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99801 * 179.97438 * 15 14 13 17 17 C 1.34820 * 117.00252 * 5.33726 * 16 15 14 18 18 H 1.08001 * 119.99593 * 354.96888 * 17 16 15 19 19 C 1.38634 * 120.00020 * 174.96470 * 17 16 15 20 20 N 1.31572 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47182 * 60.00498 * 21 19 17 23 23 H 1.48501 * 109.46873 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47501 * 300.00326 * 21 19 17 25 25 C 1.38902 * 120.00661 * 0.26478 * 15 14 13 26 26 C 1.38008 * 119.99473 * 359.45951 * 25 15 14 27 27 H 1.09004 * 109.46965 * 270.00064 * 1 2 3 28 28 H 1.08999 * 109.47197 * 30.00066 * 1 2 3 29 29 H 1.09003 * 109.46997 * 150.00196 * 1 2 3 30 30 H 0.96996 * 120.00731 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.46879 * 59.99890 * 5 4 2 32 32 H 1.09009 * 109.47095 * 300.00413 * 5 4 2 33 33 H 1.09002 * 109.46622 * 59.99872 * 6 5 4 34 34 H 1.09000 * 109.47086 * 300.00481 * 6 5 4 35 35 H 1.09002 * 109.47238 * 60.00410 * 7 6 5 36 36 H 1.09000 * 109.47557 * 300.00353 * 7 6 5 37 37 H 0.96993 * 120.00341 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99675 * 355.48546 * 11 9 8 39 39 H 1.07998 * 119.99489 * 359.97438 * 13 12 11 40 40 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 41 41 H 0.97004 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.00563 * 179.70790 * 25 15 14 43 43 H 1.08001 * 120.00490 * 180.27632 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1559 -2.6097 0.0001 7 6 5.6858 -2.6097 -0.0012 8 7 6.1742 -3.9909 -0.0004 9 6 7.4993 -4.2372 -0.0008 10 8 8.2894 -3.3130 -0.0012 11 7 7.9486 -5.5079 -0.0006 12 6 9.3216 -5.7651 -0.0962 13 6 9.7730 -6.8777 -0.7947 14 6 11.1262 -7.1314 -0.8884 15 6 12.0370 -6.2745 -0.2840 16 8 13.3685 -6.5244 -0.3758 17 6 13.7452 -7.5555 -1.1586 18 1 12.9982 -8.1897 -1.6127 19 6 15.0913 -7.8015 -1.3806 20 7 16.0013 -7.0291 -0.8269 21 14 15.6132 -9.2305 -2.4645 22 1 15.0522 -9.0485 -3.8274 23 1 17.0954 -9.2781 -2.5411 24 1 15.1068 -10.5011 -1.8864 25 6 11.5856 -5.1651 0.4196 26 6 10.2326 -4.9082 0.5086 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6959 -2.0072 0.0005 31 1 4.0095 -0.6529 0.8894 32 1 4.0089 -0.6539 -0.8906 33 1 3.7922 -3.1237 -0.8897 34 1 3.7929 -3.1234 0.8903 35 1 6.0499 -2.0956 0.8884 36 1 6.0485 -2.0961 -0.8916 37 1 5.5439 -4.7282 0.0003 38 1 7.3207 -6.2442 0.0659 39 1 9.0647 -7.5447 -1.2636 40 1 11.4772 -7.9968 -1.4311 41 1 16.9432 -7.2014 -0.9820 42 1 12.2936 -4.5015 0.8936 43 1 9.8817 -4.0433 1.0518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043558627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:25 Heat of formation + Delta-G solvation = -99.534583 kcal Electronic energy + Delta-G solvation = -24882.625467 eV Core-core repulsion = 20927.393209 eV Total energy + Delta-G solvation = -3955.232258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60553 -40.61847 -40.43088 -38.41403 -37.16741 -35.54989 -35.35254 -34.13521 -32.60846 -31.84145 -30.45773 -29.24317 -27.33638 -26.10548 -23.91076 -23.19961 -22.77124 -21.85044 -21.55890 -20.02283 -19.28312 -18.96557 -18.13883 -17.68634 -17.20478 -17.15437 -16.52976 -16.34380 -16.18976 -15.95915 -15.61504 -15.51387 -15.33331 -15.01411 -14.54080 -14.42302 -14.24119 -13.92230 -13.56764 -13.49394 -13.26086 -13.17103 -12.96727 -12.95272 -12.65463 -12.59921 -12.43411 -12.14228 -12.07319 -11.35447 -11.33429 -11.00603 -10.93784 -10.53938 -10.14808 -10.08704 -9.81744 -8.55684 -8.42855 -6.10610 0.55273 0.61133 1.38005 1.48629 1.54689 1.58274 1.64495 2.11259 2.21292 2.31701 2.86475 3.18668 3.26124 3.55459 3.85864 3.98414 4.00358 4.06939 4.09929 4.17080 4.51114 4.52689 4.54322 4.59100 4.62170 4.69685 4.76407 4.81115 5.04470 5.08878 5.10974 5.16756 5.22704 5.32969 5.42090 5.45783 5.47348 5.61403 5.71575 6.02821 6.06510 6.22517 6.58741 7.01038 7.08713 7.28591 7.56398 7.82563 8.80224 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.046763 B = 0.001577 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.621603 B =17750.141694 C =18004.511308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.716 5.716 5 C 0.118 3.882 6 C -0.119 4.119 7 C 0.139 3.861 8 N -0.722 5.722 9 C 0.694 3.306 10 O -0.623 6.623 11 N -0.661 5.661 12 C 0.081 3.919 13 C -0.079 4.079 14 C -0.219 4.219 15 C 0.105 3.895 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.107 0.893 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.021 2.979 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.254 1.254 25 C -0.191 4.191 26 C -0.075 4.075 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.421 0.579 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.417 0.583 38 H 0.424 0.576 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.271 0.729 42 H 0.109 0.891 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.404 1.297 0.551 35.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.369 5.369 5 C -0.007 4.007 6 C -0.157 4.157 7 C 0.014 3.986 8 N -0.379 5.379 9 C 0.394 3.606 10 O -0.503 6.503 11 N -0.310 5.310 12 C -0.014 4.014 13 C -0.099 4.099 14 C -0.239 4.239 15 C 0.055 3.945 16 O -0.140 6.140 17 C -0.489 4.489 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.562 5.562 21 Si 0.840 3.160 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.178 1.178 25 C -0.211 4.211 26 C -0.095 4.095 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.259 0.741 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.255 0.745 38 H 0.262 0.738 39 H 0.179 0.821 40 H 0.151 0.849 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -33.947 3.013 0.660 34.087 hybrid contribution 0.382 -1.010 -0.207 1.100 sum -33.566 2.002 0.453 33.628 Atomic orbital electron populations 1.21902 0.88051 1.06248 1.06187 1.21679 0.92447 0.82897 0.74179 1.90733 1.72344 1.33705 1.52240 1.45948 1.06940 1.09378 1.74661 1.21129 0.80468 0.97385 1.01739 1.21773 0.92490 0.95698 1.05768 1.21065 0.94320 0.81437 1.01818 1.44767 1.03836 1.09892 1.79448 1.16184 0.83539 0.82987 0.77857 1.90935 1.56043 1.44732 1.58633 1.42047 1.05346 1.06949 1.76700 1.17130 0.82746 0.98426 1.03051 1.20812 0.94525 0.97460 0.97103 1.21121 0.93305 1.02470 1.07023 1.19869 0.84689 0.94461 0.95499 1.83961 1.18988 1.49248 1.61842 1.21849 0.93282 1.06431 1.27387 0.87539 1.26636 0.94280 1.02070 0.99264 1.70209 1.01592 1.40114 1.44255 0.84621 0.77518 0.76162 0.77735 1.18132 1.20011 1.17797 1.20256 0.96052 0.98287 1.06504 1.20868 0.90891 0.99389 0.98349 0.87271 0.89444 0.86970 0.74089 0.92575 0.92664 0.88190 0.88080 0.92539 0.92760 0.74499 0.73788 0.82145 0.84909 0.91966 0.87291 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 10.30 71.24 0.73 0.14 16 2 C 0.50 6.59 7.94 87.66 0.70 7.28 16 3 O -0.61 -15.56 17.10 -3.03 -0.05 -15.61 16 4 N -0.72 -5.10 5.56 -463.05 -2.57 -7.68 16 5 C 0.12 1.22 5.67 86.38 0.49 1.71 16 6 C -0.12 -0.54 5.44 30.59 0.17 -0.38 16 7 C 0.14 1.86 5.67 86.38 0.49 2.35 16 8 N -0.72 -10.03 5.56 -478.53 -2.66 -12.69 16 9 C 0.69 17.55 8.41 179.05 1.51 19.06 16 10 O -0.62 -22.79 13.78 -3.98 -0.05 -22.84 16 11 N -0.66 -15.03 5.34 -317.04 -1.69 -16.72 16 12 C 0.08 2.67 6.30 38.16 0.24 2.91 16 13 C -0.08 -2.55 9.96 22.37 0.22 -2.32 16 14 C -0.22 -9.26 9.16 22.37 0.20 -9.06 16 15 C 0.11 5.38 6.65 22.59 0.15 5.53 16 16 O -0.23 -14.33 9.76 -23.01 -0.22 -14.55 16 17 C -0.41 -24.04 9.48 67.91 0.64 -23.40 16 18 H 0.11 5.53 5.20 -2.91 -0.02 5.51 16 19 C -0.03 -1.45 5.49 84.83 0.47 -0.98 16 20 N -0.92 -57.48 13.67 21.61 0.30 -57.19 16 21 Si 1.02 42.60 29.55 68.60 2.03 44.63 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 25 C -0.19 -8.95 9.99 22.37 0.22 -8.72 16 26 C -0.07 -2.99 8.69 22.38 0.19 -2.80 16 27 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 28 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.42 -0.42 8.47 -92.71 -0.79 -1.20 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.42 2.14 8.49 -92.71 -0.79 1.35 16 38 H 0.42 5.45 8.84 -92.71 -0.82 4.63 16 39 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.13 5.49 5.63 -2.91 -0.02 5.47 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 43 H 0.13 5.26 6.23 -2.91 -0.02 5.24 16 Total: -1.00 -92.12 371.36 0.18 -91.94 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -1.31 Total: 19.38 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 6.43 Total: -8.67 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -6.63 Total: -94.27 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.33 Total: -53.01 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -92.12 0.18 -91.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.592 kcal (2) G-P(sol) polarization free energy of solvation -92.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds