Wall clock time and date at job start Tue Mar 31 2020 13:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46510 * 119.99928 * 2 1 4 4 C 1.34775 * 120.00209 * 180.02562 * 2 1 3 5 5 O 1.21283 * 120.00103 * 359.97438 * 4 2 1 6 6 C 1.50699 * 119.99807 * 179.97438 * 4 2 1 7 7 C 1.53008 * 109.46970 * 179.97438 * 6 4 2 8 8 N 1.46497 * 109.46990 * 179.97438 * 7 6 4 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99781 * 22 20 18 24 24 H 1.48497 * 109.46655 * 209.99962 * 22 20 18 25 25 H 1.48498 * 109.46856 * 329.99802 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.08997 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46615 * 299.99387 * 1 2 3 29 29 H 1.09003 * 109.47195 * 59.99377 * 1 2 3 30 30 H 1.08997 * 109.47199 * 270.00753 * 3 2 1 31 31 H 1.09000 * 109.46473 * 30.00891 * 3 2 1 32 32 H 1.09001 * 109.46562 * 150.00035 * 3 2 1 33 33 H 1.08993 * 109.47869 * 59.99602 * 6 4 2 34 34 H 1.09001 * 109.47023 * 299.99072 * 6 4 2 35 35 H 1.09001 * 109.46888 * 59.99647 * 7 6 4 36 36 H 1.09001 * 109.46731 * 299.99546 * 7 6 4 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99805 * 354.72075 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1560 -2.6096 -0.0010 8 7 5.6210 -2.6095 -0.0022 9 6 6.2949 -3.7768 -0.0028 10 8 5.6870 -4.8298 -0.0019 11 7 7.6427 -3.7767 -0.0034 12 6 8.3424 -4.9835 0.1071 13 6 7.8235 -6.0208 0.8724 14 6 8.5140 -7.2124 0.9825 15 6 9.7193 -7.3787 0.3277 16 6 10.2461 -6.3436 -0.4342 17 8 11.4331 -6.5058 -1.0726 18 6 11.8256 -5.5133 -1.8965 19 1 11.1658 -4.6810 -2.0919 20 6 13.0764 -5.5613 -2.4928 21 7 13.8804 -6.5750 -2.2544 22 14 13.6200 -4.1865 -3.6349 23 1 14.3100 -3.1330 -2.8479 24 1 14.5504 -4.7306 -4.6564 25 1 12.4318 -3.6034 -4.3080 26 6 9.5550 -5.1454 -0.5465 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.3791 1.5836 -1.0276 31 1 1.6084 2.0283 0.5140 32 1 3.1499 1.1384 0.5139 33 1 4.0096 -0.6534 0.8887 34 1 4.0088 -0.6531 -0.8912 35 1 3.7922 -3.1236 -0.8907 36 1 3.7930 -3.1232 0.8893 37 1 6.1059 -1.7695 -0.0032 38 1 8.1275 -2.9402 -0.0806 39 1 6.8794 -5.8955 1.3818 40 1 8.1084 -8.0173 1.5775 41 1 10.2545 -8.3130 0.4119 42 1 14.7556 -6.6084 -2.6713 43 1 9.9604 -4.3406 -1.1418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048509435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:27 Heat of formation + Delta-G solvation = -53.596722 kcal Electronic energy + Delta-G solvation = -25631.570807 eV Core-core repulsion = 21678.330564 eV Total energy + Delta-G solvation = -3953.240243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54312 -40.12337 -38.72019 -36.67107 -36.04635 -35.19723 -34.17174 -32.22500 -31.51446 -29.28239 -28.64012 -28.16333 -26.64166 -25.27599 -23.82117 -21.94529 -21.74837 -20.55661 -19.67672 -18.55012 -17.89247 -17.51719 -17.30305 -16.72233 -16.34801 -15.77489 -15.60989 -15.01516 -14.82400 -14.59743 -14.32234 -14.08428 -13.91486 -13.62798 -13.51476 -13.30939 -13.12928 -13.05903 -12.92218 -12.64084 -12.35323 -12.08547 -11.92465 -11.67720 -11.52588 -11.10427 -10.99639 -10.71580 -10.42361 -10.33641 -10.01887 -9.59670 -9.45144 -9.24883 -9.16587 -8.77710 -7.66363 -7.09362 -6.42452 -4.01943 2.09840 2.15222 2.33800 2.45639 2.80504 3.11931 3.12931 3.17930 3.35341 3.96899 3.98778 4.33137 4.35023 4.47936 4.59802 4.65337 4.75637 4.86690 4.95308 5.05929 5.10821 5.13385 5.32225 5.37645 5.58934 5.66949 5.78245 5.89838 6.05378 6.13226 6.26002 6.30323 6.34441 6.59245 6.76722 6.83613 7.05045 7.14639 7.30905 7.38489 7.46964 7.67390 7.87423 8.01703 8.04906 8.66421 9.02991 9.74558 10.75749 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.002195 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.645614 B =12753.613009 C =14092.430185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.625 5.625 3 C 0.076 3.924 4 C 0.518 3.482 5 O -0.531 6.531 6 C -0.152 4.152 7 C 0.154 3.846 8 N -0.750 5.750 9 C 0.703 3.297 10 O -0.565 6.565 11 N -0.682 5.682 12 C 0.198 3.802 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.390 4.390 19 H 0.089 0.911 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.258 4.258 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.402 0.598 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.251 19.398 5.163 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C -0.067 4.067 4 C 0.306 3.694 5 O -0.406 6.406 6 C -0.192 4.192 7 C 0.029 3.971 8 N -0.407 5.407 9 C 0.403 3.597 10 O -0.441 6.441 11 N -0.329 5.329 12 C 0.105 3.895 13 C -0.225 4.225 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.200 1.200 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.280 4.280 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.228 0.772 38 H 0.236 0.764 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.805 17.627 5.094 27.740 hybrid contribution 0.735 1.939 -0.704 2.189 sum -20.070 19.565 4.390 28.370 Atomic orbital electron populations 1.21704 0.78967 1.04459 1.01283 1.47733 1.07356 1.06419 1.74514 1.21844 0.97404 0.85213 1.02240 1.20442 0.89863 0.83323 0.75809 1.90763 1.70221 1.30785 1.48873 1.21844 0.92677 0.99576 1.05100 1.20836 0.77844 0.94214 1.04184 1.45042 1.06976 1.07222 1.81438 1.15854 0.81605 0.84164 0.78062 1.90977 1.67462 1.29809 1.55828 1.42571 1.04532 1.09161 1.76617 1.17172 0.91498 0.85179 0.95676 1.20578 1.02268 0.94531 1.05147 1.20533 0.93595 0.96343 0.97701 1.20241 0.98260 0.99009 1.04663 1.19064 0.86757 0.92003 0.90716 1.84020 1.29537 1.42967 1.51567 1.21255 1.00967 1.02069 1.22388 0.89313 1.25272 0.94886 0.98190 0.98221 1.70039 1.08784 1.29090 1.41879 0.85733 0.78903 0.79653 0.79235 1.19966 1.20282 1.19318 1.20772 0.98320 1.00247 1.08621 0.89337 0.92157 0.92182 0.92226 0.90789 0.90657 0.88016 0.88008 0.90596 0.90580 0.77206 0.76362 0.86211 0.86629 0.86414 0.92075 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.69 59.85 0.64 1.07 16 2 N -0.63 -3.88 3.27 -189.51 -0.62 -4.50 16 3 C 0.08 0.19 10.29 59.85 0.62 0.81 16 4 C 0.52 4.58 7.67 -10.99 -0.08 4.50 16 5 O -0.53 -7.08 15.31 5.56 0.09 -6.99 16 6 C -0.15 -0.93 4.37 -27.88 -0.12 -1.05 16 7 C 0.15 1.59 4.96 -4.04 -0.02 1.57 16 8 N -0.75 -7.73 5.56 -65.22 -0.36 -8.09 16 9 C 0.70 10.92 8.30 -86.91 -0.72 10.20 16 10 O -0.57 -11.34 14.05 5.29 0.07 -11.27 16 11 N -0.68 -10.42 5.35 -14.24 -0.08 -10.50 16 12 C 0.20 3.89 6.27 -83.72 -0.52 3.37 16 13 C -0.20 -4.08 8.65 -39.35 -0.34 -4.42 16 14 C -0.06 -1.23 10.03 -39.63 -0.40 -1.62 16 15 C -0.20 -4.43 9.99 -39.36 -0.39 -4.82 16 16 C 0.17 4.14 6.64 -39.14 -0.26 3.88 16 17 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 18 C -0.39 -10.86 9.44 30.89 0.29 -10.56 16 19 H 0.09 2.27 5.30 -52.49 -0.28 2.00 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 21 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 22 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.26 -5.64 9.04 -39.21 -0.35 -6.00 16 27 H 0.09 0.67 6.90 -51.93 -0.36 0.31 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.10 8.07 -51.93 -0.42 -0.32 16 32 H 0.07 0.09 6.44 -51.93 -0.33 -0.24 16 33 H 0.10 0.38 7.40 -51.93 -0.38 0.00 16 34 H 0.10 0.41 8.11 -51.93 -0.42 -0.01 16 35 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.39 2.53 8.49 -40.82 -0.35 2.19 16 38 H 0.40 4.64 8.83 -40.82 -0.36 4.28 16 39 H 0.12 2.38 6.43 -52.49 -0.34 2.04 16 40 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.13 2.74 5.72 -52.48 -0.30 2.44 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -37.77 366.42 -7.04 -44.81 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.63 Total: 7.45 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.77 Total: -2.13 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.30 Total: -47.61 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.16 Total: -23.34 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.77 -7.04 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048509435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.784 kcal (2) G-P(sol) polarization free energy of solvation -37.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds