Wall clock time and date at job start Tue Mar 31 2020 13:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46510 * 119.99928 * 2 1 4 4 C 1.34775 * 120.00209 * 180.02562 * 2 1 3 5 5 O 1.21283 * 120.00103 * 359.97438 * 4 2 1 6 6 C 1.50699 * 119.99807 * 179.97438 * 4 2 1 7 7 C 1.53008 * 109.46970 * 179.97438 * 6 4 2 8 8 N 1.46497 * 109.46990 * 179.97438 * 7 6 4 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99781 * 22 20 18 24 24 H 1.48497 * 109.46655 * 209.99962 * 22 20 18 25 25 H 1.48498 * 109.46856 * 329.99802 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.08997 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46615 * 299.99387 * 1 2 3 29 29 H 1.09003 * 109.47195 * 59.99377 * 1 2 3 30 30 H 1.08997 * 109.47199 * 270.00753 * 3 2 1 31 31 H 1.09000 * 109.46473 * 30.00891 * 3 2 1 32 32 H 1.09001 * 109.46562 * 150.00035 * 3 2 1 33 33 H 1.08993 * 109.47869 * 59.99602 * 6 4 2 34 34 H 1.09001 * 109.47023 * 299.99072 * 6 4 2 35 35 H 1.09001 * 109.46888 * 59.99647 * 7 6 4 36 36 H 1.09001 * 109.46731 * 299.99546 * 7 6 4 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99805 * 354.72075 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1560 -2.6096 -0.0010 8 7 5.6210 -2.6095 -0.0022 9 6 6.2949 -3.7768 -0.0028 10 8 5.6870 -4.8298 -0.0019 11 7 7.6427 -3.7767 -0.0034 12 6 8.3424 -4.9835 0.1071 13 6 7.8235 -6.0208 0.8724 14 6 8.5140 -7.2124 0.9825 15 6 9.7193 -7.3787 0.3277 16 6 10.2461 -6.3436 -0.4342 17 8 11.4331 -6.5058 -1.0726 18 6 11.8256 -5.5133 -1.8965 19 1 11.1658 -4.6810 -2.0919 20 6 13.0764 -5.5613 -2.4928 21 7 13.8804 -6.5750 -2.2544 22 14 13.6200 -4.1865 -3.6349 23 1 14.3100 -3.1330 -2.8479 24 1 14.5504 -4.7306 -4.6564 25 1 12.4318 -3.6034 -4.3080 26 6 9.5550 -5.1454 -0.5465 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.3791 1.5836 -1.0276 31 1 1.6084 2.0283 0.5140 32 1 3.1499 1.1384 0.5139 33 1 4.0096 -0.6534 0.8887 34 1 4.0088 -0.6531 -0.8912 35 1 3.7922 -3.1236 -0.8907 36 1 3.7930 -3.1232 0.8893 37 1 6.1059 -1.7695 -0.0032 38 1 8.1275 -2.9402 -0.0806 39 1 6.8794 -5.8955 1.3818 40 1 8.1084 -8.0173 1.5775 41 1 10.2545 -8.3130 0.4119 42 1 14.7556 -6.6084 -2.6713 43 1 9.9604 -4.3406 -1.1418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048509435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:26 Heat of formation + Delta-G solvation = -82.770331 kcal Electronic energy + Delta-G solvation = -25632.835869 eV Core-core repulsion = 21678.330564 eV Total energy + Delta-G solvation = -3954.505306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72878 -40.96232 -40.40443 -38.30423 -36.65114 -36.26777 -35.65297 -34.20717 -32.38119 -30.86941 -30.05081 -28.79165 -27.34135 -27.10048 -24.71366 -23.48338 -23.21495 -21.91160 -20.50917 -19.89349 -19.41587 -18.97197 -18.19576 -17.36323 -17.23978 -16.93510 -16.84603 -16.54888 -16.14734 -15.99146 -15.62262 -15.47344 -15.26290 -15.17809 -14.56352 -14.29853 -14.17731 -13.97792 -13.54253 -13.42015 -13.31692 -13.24882 -13.16038 -12.76151 -12.70801 -12.64282 -12.47785 -12.38598 -12.09287 -11.56565 -11.30894 -11.17308 -10.97183 -10.70536 -10.23396 -9.69829 -9.30965 -8.82433 -8.43685 -6.12382 0.46567 0.72694 1.37750 1.42057 1.47758 1.54283 1.55637 2.04075 2.10969 2.20386 2.87067 3.12881 3.20479 3.51919 3.57425 3.79037 4.03602 4.13891 4.29716 4.35668 4.45085 4.47049 4.51346 4.54187 4.64815 4.74001 4.74982 4.86625 4.88146 4.93739 5.00009 5.04793 5.13722 5.31888 5.37334 5.48098 5.50112 5.69648 5.71010 5.97293 6.04344 6.22492 6.29760 6.96957 7.00649 7.09707 7.45226 7.80558 8.79339 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.002195 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.645614 B =12753.613009 C =14092.430185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.622 5.622 3 C 0.067 3.933 4 C 0.507 3.493 5 O -0.591 6.591 6 C -0.135 4.135 7 C 0.156 3.844 8 N -0.720 5.720 9 C 0.700 3.300 10 O -0.613 6.613 11 N -0.670 5.670 12 C 0.206 3.794 13 C -0.201 4.201 14 C -0.052 4.052 15 C -0.215 4.215 16 C 0.135 3.865 17 O -0.227 6.227 18 C -0.411 4.411 19 H 0.103 0.897 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.253 1.253 26 C -0.259 4.259 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.419 0.581 38 H 0.422 0.578 39 H 0.127 0.873 40 H 0.152 0.848 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 23.354 5.315 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.355 5.355 3 C -0.074 4.074 4 C 0.296 3.704 5 O -0.472 6.472 6 C -0.175 4.175 7 C 0.032 3.968 8 N -0.378 5.378 9 C 0.400 3.600 10 O -0.492 6.492 11 N -0.319 5.319 12 C 0.111 3.889 13 C -0.222 4.222 14 C -0.071 4.071 15 C -0.235 4.235 16 C 0.084 3.916 17 O -0.133 6.133 18 C -0.487 4.487 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.176 1.176 26 C -0.281 4.281 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.257 0.743 38 H 0.260 0.740 39 H 0.144 0.856 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.925 21.724 5.274 31.312 hybrid contribution 0.772 0.749 -0.598 1.230 sum -21.153 22.473 4.677 31.214 Atomic orbital electron populations 1.21776 0.78972 1.03130 1.02992 1.47909 1.07759 1.07061 1.72771 1.22154 0.98124 0.83580 1.03548 1.20945 0.90982 0.83230 0.75212 1.90745 1.71462 1.33003 1.51961 1.21773 0.90668 0.96829 1.08232 1.20747 0.77290 0.96998 1.01804 1.44738 1.06955 1.06724 1.79337 1.16047 0.81372 0.84848 0.77724 1.90952 1.68312 1.32038 1.57921 1.42363 1.04599 1.08680 1.76209 1.17163 0.90751 0.86670 0.94334 1.20859 1.02183 0.94702 1.04481 1.20897 0.92215 0.97238 0.96725 1.20459 0.99284 0.98772 1.05011 1.19574 0.86422 0.93895 0.91726 1.83988 1.31653 1.44281 1.53362 1.21794 1.01731 1.02379 1.22843 0.87962 1.26616 0.94572 1.01084 0.99892 1.70194 1.09537 1.31914 1.44164 0.84570 0.78776 0.76033 0.76713 1.18477 1.20012 1.17622 1.20795 0.98943 0.99521 1.08803 0.92190 0.90304 0.90567 0.91076 0.89287 0.88763 0.84520 0.84890 0.93388 0.92900 0.74290 0.73961 0.85551 0.83062 0.86295 0.91892 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.69 127.77 1.37 2.08 16 2 N -0.62 -6.28 3.27 -871.87 -2.85 -9.13 16 3 C 0.07 0.06 10.29 127.77 1.31 1.38 16 4 C 0.51 8.28 7.67 87.66 0.67 8.96 16 5 O -0.59 -16.28 15.31 -3.04 -0.05 -16.32 16 6 C -0.14 -1.21 4.37 29.85 0.13 -1.08 16 7 C 0.16 3.02 4.96 86.38 0.43 3.45 16 8 N -0.72 -12.79 5.56 -478.51 -2.66 -15.45 16 9 C 0.70 20.36 8.30 179.05 1.49 21.85 16 10 O -0.61 -24.14 14.05 -4.00 -0.06 -24.19 16 11 N -0.67 -18.90 5.35 -317.22 -1.70 -20.59 16 12 C 0.21 7.81 6.27 38.13 0.24 8.05 16 13 C -0.20 -7.74 8.65 22.42 0.19 -7.54 16 14 C -0.05 -1.97 10.03 22.24 0.22 -1.75 16 15 C -0.22 -9.57 9.99 22.41 0.22 -9.34 16 16 C 0.14 6.81 6.64 22.56 0.15 6.96 16 17 O -0.23 -13.56 9.76 -22.74 -0.22 -13.78 16 18 C -0.41 -23.49 9.44 67.92 0.64 -22.85 16 19 H 0.10 5.29 5.30 -2.91 -0.02 5.27 16 20 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 21 N -0.92 -55.97 13.67 21.61 0.30 -55.67 16 22 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 C -0.26 -11.28 9.04 22.51 0.20 -11.07 16 27 H 0.06 0.95 6.90 -2.39 -0.02 0.93 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.09 -0.14 8.07 -2.39 -0.02 -0.15 16 32 H 0.09 -0.25 6.44 -2.39 -0.02 -0.27 16 33 H 0.14 0.32 7.40 -2.39 -0.02 0.30 16 34 H 0.13 0.43 8.11 -2.39 -0.02 0.41 16 35 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.42 3.48 8.49 -92.71 -0.79 2.69 16 38 H 0.42 8.39 8.83 -92.71 -0.82 7.57 16 39 H 0.13 4.79 6.43 -2.91 -0.02 4.78 16 40 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 42 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.13 5.56 5.72 -2.91 -0.02 5.54 16 Total: -1.00 -89.11 366.42 1.99 -87.12 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.54 Total: 26.13 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 7.74 Total: -1.81 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -6.92 Total: -100.85 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.32 Total: -54.30 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -89.11 1.99 -87.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048509435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.352 kcal (2) G-P(sol) polarization free energy of solvation -89.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds