Wall clock time and date at job start Tue Mar 31 2020 13:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21273 * 120.00090 * 2 1 4 4 N 1.34779 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00101 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46866 * 179.97438 * 5 4 2 7 7 C 1.53008 * 109.46929 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46833 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47194 * 119.99906 * 22 20 18 25 25 H 1.48503 * 109.46815 * 240.00051 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.09001 * 109.46978 * 240.00228 * 1 2 3 28 28 H 1.08994 * 109.46864 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46773 * 120.00046 * 1 2 3 30 30 H 0.97000 * 119.99820 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.46958 * 59.99652 * 5 4 2 32 32 H 1.09001 * 109.46725 * 299.99511 * 5 4 2 33 33 H 1.08993 * 109.47791 * 59.99923 * 6 5 4 34 34 H 1.09001 * 109.47141 * 299.99369 * 6 5 4 35 35 H 1.09001 * 109.46888 * 59.99768 * 7 6 5 36 36 H 1.09001 * 109.46731 * 299.99666 * 7 6 5 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.97001 * 120.00264 * 354.72212 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0001 7 6 5.6859 -2.6098 -0.0001 8 7 6.1742 -3.9910 -0.0009 9 6 7.4994 -4.2372 -0.0005 10 8 8.2895 -3.3131 -0.0001 11 7 7.9486 -5.5079 -0.0017 12 6 9.3197 -5.7652 -0.1125 13 6 10.1247 -4.9291 -0.8766 14 6 11.4783 -5.1827 -0.9869 15 6 12.0369 -6.2646 -0.3336 16 6 11.2365 -7.1074 0.4270 17 8 11.7850 -8.1734 1.0640 18 6 10.9802 -8.8754 1.8868 19 1 9.9755 -8.5310 2.0826 20 6 11.4423 -10.0396 2.4815 21 7 12.6661 -10.4593 2.2425 22 14 10.3274 -11.0119 3.6221 23 1 9.0109 -10.3327 3.7249 24 1 10.1375 -12.3812 3.0798 25 1 10.9478 -11.0944 4.9688 26 6 9.8765 -6.8554 0.5396 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6959 -2.0072 -0.0005 31 1 4.0089 -0.6539 0.8905 32 1 4.0096 -0.6529 -0.8895 33 1 3.7929 -3.1234 -0.8902 34 1 3.7922 -3.1237 0.8897 35 1 6.0493 -2.0959 0.8899 36 1 6.0492 -2.0959 -0.8901 37 1 5.5439 -4.7282 -0.0009 38 1 7.3216 -6.2441 0.0744 39 1 9.6918 -4.0801 -1.3848 40 1 12.1020 -4.5313 -1.5810 41 1 13.0961 -6.4576 -0.4181 42 1 12.9893 -11.2739 2.6583 43 1 9.2528 -7.5068 1.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048514371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:28 Heat of formation + Delta-G solvation = -101.088388 kcal Electronic energy + Delta-G solvation = -25141.436621 eV Core-core repulsion = 21186.136984 eV Total energy + Delta-G solvation = -3955.299637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69065 -40.62042 -40.43066 -38.37515 -37.19686 -35.64696 -35.53286 -34.21254 -32.69884 -31.00678 -30.47394 -29.78509 -27.30993 -26.26645 -23.63222 -23.46827 -22.80521 -21.77735 -21.55146 -20.08304 -19.40924 -18.99702 -17.71872 -17.59828 -17.21376 -16.99118 -16.81387 -16.52079 -16.18332 -16.01506 -15.66524 -15.55286 -15.40127 -15.27658 -14.56591 -14.43023 -14.23788 -13.94840 -13.54147 -13.52907 -13.25150 -12.97035 -12.96668 -12.77006 -12.70883 -12.60810 -12.37604 -12.09330 -12.07215 -11.55196 -11.29454 -11.15648 -10.99428 -10.72049 -10.19638 -10.12195 -9.31215 -8.82546 -8.44786 -6.13461 0.46420 0.72370 1.36958 1.45186 1.50467 1.55314 1.64824 2.05169 2.19057 2.30249 2.86513 3.15789 3.20176 3.51595 3.84698 3.97433 3.98092 4.06636 4.14134 4.35278 4.46733 4.50555 4.55000 4.58155 4.64516 4.70194 4.72743 4.78728 5.01137 5.06436 5.09713 5.13061 5.16915 5.35652 5.39154 5.44551 5.49984 5.69349 5.70778 5.97598 6.03663 6.22551 6.58130 6.96402 6.99779 7.28230 7.45669 7.79803 8.78481 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.001933 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.128285 B =14481.711207 C =15841.653556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.717 5.717 5 C 0.119 3.881 6 C -0.121 4.121 7 C 0.139 3.861 8 N -0.722 5.722 9 C 0.699 3.301 10 O -0.613 6.613 11 N -0.672 5.672 12 C 0.206 3.794 13 C -0.200 4.200 14 C -0.052 4.052 15 C -0.216 4.216 16 C 0.135 3.865 17 O -0.228 6.228 18 C -0.411 4.411 19 H 0.103 0.897 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.019 2.981 23 H -0.248 1.248 24 H -0.268 1.268 25 H -0.273 1.273 26 C -0.260 4.260 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.421 0.579 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.421 0.579 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.797 11.846 -5.251 30.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.371 5.371 5 C -0.006 4.006 6 C -0.159 4.159 7 C 0.014 3.986 8 N -0.379 5.379 9 C 0.400 3.600 10 O -0.492 6.492 11 N -0.321 5.321 12 C 0.111 3.889 13 C -0.221 4.221 14 C -0.071 4.071 15 C -0.236 4.236 16 C 0.084 3.916 17 O -0.134 6.134 18 C -0.487 4.487 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.171 1.171 24 H -0.193 1.193 25 H -0.198 1.198 26 C -0.282 4.282 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.258 0.742 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.259 0.741 39 H 0.147 0.853 40 H 0.170 0.830 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.409 13.198 -5.213 29.981 hybrid contribution -0.453 -1.476 0.598 1.656 sum -26.863 11.722 -4.615 29.670 Atomic orbital electron populations 1.21928 0.88091 1.05904 1.06592 1.21662 0.92427 0.82878 0.74191 1.90727 1.72371 1.33656 1.52125 1.45917 1.06959 1.09387 1.74794 1.21115 0.80424 0.97178 1.01838 1.21789 0.92575 0.95876 1.05685 1.21105 0.94294 0.81091 1.02081 1.44837 1.03762 1.10154 1.79175 1.16071 0.83700 0.82551 0.77713 1.90940 1.55980 1.44185 1.58073 1.42406 1.05908 1.07520 1.76243 1.17169 0.83004 0.94433 0.94334 1.20861 0.94232 1.02579 1.04418 1.20908 0.94581 0.94891 0.96677 1.20466 0.99784 0.98267 1.05055 1.19580 0.92104 0.88192 0.91745 1.83987 1.39361 1.36572 1.53480 1.21831 0.97864 1.06121 1.22894 0.87962 1.26600 0.98491 0.97148 0.99859 1.70197 1.17866 1.23614 1.44126 0.84521 0.77597 0.77543 0.76477 1.17118 1.19314 1.19784 1.20794 0.94884 1.03592 1.08887 0.86921 0.89846 0.86857 0.74156 0.92586 0.92366 0.88155 0.88402 0.92533 0.92080 0.74613 0.74121 0.85334 0.82989 0.86341 0.91887 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.32 71.24 0.74 0.07 16 2 C 0.50 6.72 7.94 87.66 0.70 7.42 16 3 O -0.61 -15.52 17.08 -3.01 -0.05 -15.57 16 4 N -0.72 -5.45 5.56 -463.06 -2.57 -8.02 16 5 C 0.12 1.26 5.67 86.38 0.49 1.75 16 6 C -0.12 -0.66 5.44 30.60 0.17 -0.49 16 7 C 0.14 1.93 5.67 86.38 0.49 2.42 16 8 N -0.72 -11.29 5.56 -478.51 -2.66 -13.95 16 9 C 0.70 18.91 8.30 179.05 1.49 20.40 16 10 O -0.61 -22.28 14.05 -4.00 -0.06 -22.33 16 11 N -0.67 -18.30 5.35 -317.22 -1.70 -19.99 16 12 C 0.21 7.60 6.27 38.13 0.24 7.84 16 13 C -0.20 -7.42 8.65 22.42 0.19 -7.23 16 14 C -0.05 -1.91 10.03 22.24 0.22 -1.69 16 15 C -0.22 -9.43 9.99 22.41 0.22 -9.21 16 16 C 0.14 6.73 6.64 22.56 0.15 6.88 16 17 O -0.23 -13.55 9.76 -22.74 -0.22 -13.77 16 18 C -0.41 -23.36 9.44 67.92 0.64 -22.72 16 19 H 0.10 5.27 5.30 -2.91 -0.02 5.26 16 20 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 21 N -0.92 -55.74 13.67 21.61 0.30 -55.44 16 22 Si 1.02 41.54 29.55 68.60 2.03 43.56 16 23 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 C -0.26 -11.17 9.04 22.51 0.20 -10.97 16 27 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 29 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.42 -0.06 8.47 -92.71 -0.79 -0.85 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.42 3.26 8.49 -92.71 -0.79 2.47 16 38 H 0.42 8.20 8.83 -92.71 -0.82 7.39 16 39 H 0.13 4.64 6.43 -2.91 -0.02 4.62 16 40 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 42 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.13 5.46 5.72 -2.91 -0.02 5.44 16 Total: -1.00 -88.03 371.73 0.15 -87.87 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -1.31 Total: 24.02 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 6.40 Total: -6.38 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -6.63 Total: -97.40 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.33 Total: -51.68 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -88.03 0.15 -87.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.215 kcal (2) G-P(sol) polarization free energy of solvation -88.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds