Wall clock time and date at job start Tue Mar 31 2020 12:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47146 * 2 1 4 4 C 1.34781 * 120.00243 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00052 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47506 * 299.99689 * 6 4 3 8 8 C 1.52996 * 109.47450 * 60.00268 * 6 4 3 9 9 N 1.46505 * 109.46976 * 180.02562 * 6 4 3 10 10 C 1.34775 * 120.00126 * 154.99902 * 9 6 4 11 11 O 1.21589 * 119.99626 * 0.02562 * 10 9 6 12 12 N 1.34769 * 120.00357 * 179.97438 * 10 9 6 13 13 C 1.39948 * 120.00506 * 174.74069 * 12 10 9 14 14 C 1.38955 * 120.03330 * 326.18035 * 13 12 10 15 15 C 1.38158 * 120.07039 * 179.72006 * 14 13 12 16 16 C 1.38174 * 120.13328 * 0.55134 * 15 14 13 17 17 C 1.38912 * 120.06993 * 359.72335 * 16 15 14 18 18 O 1.35746 * 120.03332 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99994 * 185.92639 * 18 17 16 20 20 H 1.08002 * 119.99873 * 5.40526 * 19 18 17 21 21 C 1.38652 * 120.00082 * 185.40735 * 19 18 17 22 22 N 1.31561 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47077 * 59.99920 * 23 21 19 25 25 H 1.48497 * 109.47378 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47443 * 300.00163 * 23 21 19 27 27 C 1.38704 * 120.03642 * 146.45274 * 13 12 10 28 28 H 1.08995 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47051 * 300.00269 * 1 2 3 30 30 H 1.08998 * 109.46826 * 59.99464 * 1 2 3 31 31 H 1.08997 * 109.47019 * 240.00287 * 2 1 3 32 32 H 1.08998 * 109.47186 * 119.99650 * 2 1 3 33 33 H 0.97002 * 120.00271 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47273 * 300.00214 * 8 6 4 35 35 H 1.09006 * 109.47127 * 59.99755 * 8 6 4 36 36 H 1.08995 * 109.47295 * 179.97438 * 8 6 4 37 37 H 0.97002 * 119.99904 * 334.99686 * 9 6 4 38 38 H 0.97005 * 119.99643 * 354.74049 * 12 10 9 39 39 H 1.08001 * 119.96433 * 359.97438 * 14 13 12 40 40 H 1.07994 * 119.93400 * 180.25489 * 15 14 13 41 41 H 1.08001 * 119.96506 * 179.70312 * 16 15 14 42 42 H 0.96993 * 119.99733 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.06795 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8457 3.0483 0.0011 7 1 3.4828 3.5624 -0.8889 8 6 3.3354 3.7692 1.2504 9 7 5.3108 3.0483 0.0010 10 6 5.9846 4.1063 -0.4919 11 8 5.3766 5.0610 -0.9360 12 7 7.3323 4.1066 -0.4915 13 6 8.0321 5.1537 -1.1019 14 6 7.5146 5.7683 -2.2355 15 6 8.2019 6.8059 -2.8353 16 6 9.4111 7.2281 -2.3169 17 6 9.9366 6.6140 -1.1871 18 8 11.1248 7.0290 -0.6787 19 6 11.6374 6.3130 0.3424 20 1 11.1507 5.4033 0.6617 21 6 12.7891 6.7447 0.9824 22 7 13.3821 7.8526 0.5930 23 14 13.4988 5.7531 2.3974 24 1 13.8422 4.3885 1.9225 25 1 14.7230 6.4223 2.9059 26 1 12.4958 5.6595 3.4884 27 6 9.2457 5.5753 -0.5791 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3880 2.1185 0.0004 34 1 2.2454 3.7692 1.2501 35 1 3.6985 3.2551 2.1404 36 1 3.6991 4.7967 1.2510 37 1 5.7958 2.2868 0.3557 38 1 7.8173 3.3810 -0.0682 39 1 6.5720 5.4373 -2.6459 40 1 7.7957 7.2847 -3.7139 41 1 9.9485 8.0363 -2.7907 42 1 14.1876 8.1547 1.0410 43 1 9.6520 5.0965 0.2996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048514385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:08 Heat of formation + Delta-G solvation = -90.913240 kcal Electronic energy + Delta-G solvation = -26061.676707 eV Core-core repulsion = 22106.818298 eV Total energy + Delta-G solvation = -3954.858409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91930 -41.00073 -40.29918 -38.28838 -36.51531 -36.09296 -35.64151 -34.21998 -32.58561 -31.07087 -30.59438 -29.73754 -27.28492 -25.89924 -24.13335 -23.48160 -23.16855 -21.85799 -21.42469 -20.29699 -19.45697 -19.29371 -18.02272 -17.55268 -16.99371 -16.94404 -16.75289 -16.43052 -16.12665 -15.90237 -15.64895 -15.50531 -15.37837 -15.14125 -14.58639 -14.53961 -14.20398 -13.82204 -13.56058 -13.42524 -13.30565 -13.16597 -12.77801 -12.71249 -12.66934 -12.58606 -12.45397 -12.36569 -12.14414 -11.52582 -11.35043 -11.13431 -11.04870 -10.71439 -10.34178 -10.16408 -9.32320 -8.83276 -8.44746 -6.13224 0.45850 0.72787 1.33371 1.36444 1.42502 1.47112 1.52421 1.96775 2.18206 2.19242 2.86340 3.07013 3.19533 3.51577 3.55311 3.98019 4.07669 4.13066 4.14630 4.24012 4.35215 4.47037 4.52759 4.60117 4.64422 4.72689 4.76332 4.92931 5.04118 5.07024 5.12544 5.18099 5.25521 5.29357 5.33462 5.39395 5.48839 5.69435 5.70452 5.89463 6.03413 6.22047 6.39822 6.84124 6.99540 7.07152 7.37134 7.79462 8.77987 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.002402 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.459399 B =11653.894674 C =12706.018024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.110 3.890 3 N -0.710 5.710 4 C 0.515 3.485 5 O -0.573 6.573 6 C 0.144 3.856 7 H 0.118 0.882 8 C -0.155 4.155 9 N -0.719 5.719 10 C 0.709 3.291 11 O -0.600 6.600 12 N -0.675 5.675 13 C 0.206 3.794 14 C -0.198 4.198 15 C -0.050 4.050 16 C -0.214 4.214 17 C 0.135 3.865 18 O -0.226 6.226 19 C -0.412 4.412 20 H 0.102 0.898 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.258 1.258 27 C -0.261 4.261 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.419 0.581 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.412 0.588 38 H 0.418 0.582 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.694 -15.429 1.085 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.363 5.363 4 C 0.300 3.700 5 O -0.452 6.452 6 C 0.035 3.965 7 H 0.135 0.865 8 C -0.213 4.213 9 N -0.376 5.376 10 C 0.410 3.590 11 O -0.479 6.479 12 N -0.322 5.322 13 C 0.111 3.889 14 C -0.219 4.219 15 C -0.068 4.068 16 C -0.234 4.234 17 C 0.084 3.916 18 O -0.132 6.132 19 C -0.488 4.488 20 H 0.119 0.881 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.183 1.183 27 C -0.283 4.283 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.256 0.744 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.249 0.751 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.173 0.827 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.461 -15.010 0.690 30.430 hybrid contribution 1.002 -0.500 0.940 1.462 sum -25.460 -15.510 1.630 29.856 Atomic orbital electron populations 1.21970 0.91792 1.04248 1.03486 1.21430 0.96282 0.81874 1.01714 1.45896 1.05981 1.10358 1.74059 1.20643 0.83375 0.90539 0.75408 1.90708 1.56398 1.46954 1.51183 1.20737 0.79696 0.93119 1.02945 0.86477 1.22145 1.03252 1.00561 0.95367 1.44741 1.06475 1.19863 1.66542 1.15815 0.81336 0.83183 0.78670 1.90919 1.67923 1.35565 1.53472 1.42433 1.04849 1.25376 1.59550 1.17178 0.90742 0.89319 0.91658 1.20861 1.02450 1.01577 0.97018 1.20916 0.92066 0.94913 0.98923 1.20478 0.99532 1.05389 0.98038 1.19586 0.85951 0.92899 0.93169 1.83984 1.30259 1.51832 1.47156 1.21742 1.09679 1.06623 1.10778 0.88078 1.26575 0.96152 0.97877 1.01436 1.70179 1.19825 1.23347 1.42338 0.84664 0.77808 0.77694 0.76160 1.18067 1.19784 1.18259 1.20790 0.98839 1.03876 1.04820 0.89861 0.90853 0.91148 0.92508 0.92084 0.74371 0.87773 0.91683 0.92242 0.75091 0.74462 0.85107 0.82711 0.86199 0.91868 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 10.03 71.98 0.72 0.24 16 2 C 0.11 1.02 6.39 86.38 0.55 1.57 16 3 N -0.71 -6.92 5.45 -463.07 -2.52 -9.45 16 4 C 0.51 8.75 7.22 87.66 0.63 9.39 16 5 O -0.57 -14.21 15.84 -3.03 -0.05 -14.26 16 6 C 0.14 2.47 2.98 44.24 0.13 2.60 16 7 H 0.12 2.05 7.58 -2.39 -0.02 2.03 16 8 C -0.15 -2.08 9.38 71.98 0.68 -1.40 16 9 N -0.72 -15.85 4.96 -461.42 -2.29 -18.14 16 10 C 0.71 20.81 8.26 179.06 1.48 22.29 16 11 O -0.60 -21.08 13.72 -4.00 -0.05 -21.13 16 12 N -0.67 -20.43 5.35 -317.24 -1.70 -22.13 16 13 C 0.21 7.89 6.27 38.13 0.24 8.13 16 14 C -0.20 -7.39 8.65 22.42 0.19 -7.20 16 15 C -0.05 -1.82 10.03 22.24 0.22 -1.59 16 16 C -0.21 -9.40 9.99 22.42 0.22 -9.17 16 17 C 0.14 6.83 6.64 22.56 0.15 6.98 16 18 O -0.23 -13.61 9.76 -22.72 -0.22 -13.83 16 19 C -0.41 -23.84 9.44 67.92 0.64 -23.20 16 20 H 0.10 5.32 5.30 -2.91 -0.02 5.30 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -56.35 13.67 21.61 0.30 -56.05 16 23 Si 1.02 42.61 29.55 68.60 2.03 44.64 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 27 C -0.26 -11.61 9.04 22.51 0.20 -11.40 16 28 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.42 1.51 7.89 -92.71 -0.73 0.78 16 34 H 0.10 0.66 7.56 -2.39 -0.02 0.64 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.41 8.33 7.81 -92.71 -0.72 7.60 16 38 H 0.42 10.20 8.83 -92.70 -0.82 9.38 16 39 H 0.13 4.68 6.45 -2.91 -0.02 4.66 16 40 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.13 5.59 5.71 -2.91 -0.02 5.58 16 Total: -1.00 -80.28 367.99 0.83 -79.45 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -1.19 Total: 34.49 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 6.53 Total: -3.60 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -6.21 Total: -105.77 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.32 Total: -49.22 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -80.28 0.83 -79.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.463 kcal (2) G-P(sol) polarization free energy of solvation -80.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds