Wall clock time and date at job start Tue Mar 31 2020 12:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46958 * 2 1 4 4 C 1.34783 * 119.99946 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99852 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99962 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46887 * 60.00311 * 6 4 3 8 8 C 1.52998 * 109.47094 * 299.99905 * 6 4 3 9 9 N 1.46507 * 109.46826 * 180.02562 * 6 4 3 10 10 C 1.34775 * 119.99900 * 204.99996 * 9 6 4 11 11 O 1.21594 * 119.99846 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00175 * 180.02562 * 10 9 6 13 13 C 1.39942 * 120.00133 * 185.30218 * 12 10 9 14 14 C 1.38962 * 120.03378 * 33.56194 * 13 12 10 15 15 C 1.38161 * 120.06420 * 179.97438 * 14 13 12 16 16 C 1.38168 * 120.13635 * 359.97438 * 15 14 13 17 17 C 1.38906 * 120.07245 * 359.97438 * 16 15 14 18 18 O 1.35752 * 120.03361 * 180.02562 * 17 16 15 19 19 C 1.34832 * 117.00075 * 185.84476 * 18 17 16 20 20 H 1.07991 * 120.00017 * 5.40522 * 19 18 17 21 21 C 1.38649 * 119.99696 * 185.40735 * 19 18 17 22 22 N 1.31551 * 120.00502 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47141 * 59.99715 * 23 21 19 25 25 H 1.48499 * 109.47085 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47090 * 299.99882 * 23 21 19 27 27 C 1.38701 * 120.03248 * 213.53643 * 13 12 10 28 28 H 1.08996 * 109.46920 * 59.99667 * 1 2 3 29 29 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46750 * 299.99763 * 1 2 3 31 31 H 1.08995 * 109.46936 * 240.00032 * 2 1 3 32 32 H 1.09001 * 109.47365 * 120.00392 * 2 1 3 33 33 H 0.97005 * 120.00589 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.47204 * 60.00435 * 8 6 4 35 35 H 1.09000 * 109.46831 * 180.02562 * 8 6 4 36 36 H 1.08995 * 109.47209 * 300.00231 * 8 6 4 37 37 H 0.97003 * 120.00045 * 24.99640 * 9 6 4 38 38 H 0.97004 * 119.99240 * 5.29545 * 12 10 9 39 39 H 1.07997 * 119.96802 * 359.97438 * 14 13 12 40 40 H 1.07994 * 119.92777 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.95837 * 179.97438 * 16 15 14 42 42 H 0.97002 * 120.00491 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.07444 * 359.74702 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1316 0.7056 -0.0005 6 6 3.8458 3.0483 0.0001 7 1 3.4829 3.5616 0.8906 8 6 3.3351 3.7703 -1.2485 9 7 5.3108 3.0483 -0.0013 10 6 5.9852 4.1057 0.4921 11 8 5.3776 5.0596 0.9389 12 7 7.3329 4.1060 0.4904 13 6 8.0333 5.1519 1.1021 14 6 7.5142 5.7679 2.2344 15 6 8.2053 6.8002 2.8390 16 6 9.4143 7.2228 2.3206 17 6 9.9389 6.6103 1.1896 18 8 11.1271 7.0259 0.6812 19 6 11.5210 6.4738 -0.4841 20 1 10.8614 5.8025 -1.0138 21 6 12.7729 6.7678 -1.0023 22 7 13.5763 7.5859 -0.3573 23 14 13.3183 6.0035 -2.6172 24 1 12.3801 6.4042 -3.6963 25 1 14.6863 6.4751 -2.9509 26 1 13.3218 4.5241 -2.4884 27 6 9.2464 5.5743 0.5790 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 2.2452 3.7703 -1.2479 35 1 3.6988 4.7978 -1.2483 36 1 3.6980 3.2570 -2.1389 37 1 5.7955 2.2871 -0.3573 38 1 7.8174 3.3811 0.0653 39 1 6.5696 5.4395 2.6421 40 1 7.8001 7.2771 3.7191 41 1 9.9519 8.0303 2.7953 42 1 14.4520 7.7919 -0.7201 43 1 9.6541 5.0941 -0.2983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048514387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:21 Heat of formation + Delta-G solvation = -63.802478 kcal Electronic energy + Delta-G solvation = -26063.522253 eV Core-core repulsion = 22109.839455 eV Total energy + Delta-G solvation = -3953.682798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.80491 -39.89010 -38.68640 -36.66090 -35.82776 -35.05664 -34.19865 -32.23253 -31.75989 -30.17524 -29.09567 -28.24070 -25.34803 -25.10584 -23.32295 -22.11705 -21.75786 -20.70436 -20.42413 -18.94741 -17.86679 -17.70506 -16.86224 -16.70803 -16.15355 -15.66176 -15.41324 -15.07484 -14.71730 -14.66559 -14.51451 -14.08301 -13.94521 -13.75743 -13.51311 -13.07023 -13.02189 -12.90174 -12.69863 -12.36121 -12.34243 -12.06124 -11.91596 -11.69809 -11.54863 -11.09777 -10.99659 -10.72063 -10.43102 -10.25558 -10.07107 -9.62024 -9.58922 -9.45486 -9.28435 -8.76997 -7.67066 -7.09994 -6.41775 -4.01384 2.06893 2.16410 2.35002 2.46521 2.91423 3.14179 3.14750 3.17979 3.31139 3.98566 4.14408 4.23908 4.49519 4.57265 4.64532 4.72469 4.81817 4.83178 5.13801 5.20162 5.28990 5.31871 5.38720 5.44244 5.52048 5.73138 5.84279 5.91425 6.04409 6.12473 6.20466 6.29696 6.31016 6.58868 6.82750 6.96356 7.04365 7.14192 7.31041 7.37118 7.46875 7.70547 7.86502 8.01726 8.03935 8.61491 9.03632 9.74517 10.76234 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.002405 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.712995 B =11640.970690 C =12694.611713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.727 5.727 4 C 0.512 3.488 5 O -0.533 6.533 6 C 0.147 3.853 7 H 0.117 0.883 8 C -0.161 4.161 9 N -0.732 5.732 10 C 0.708 3.292 11 O -0.571 6.571 12 N -0.679 5.679 13 C 0.199 3.801 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.169 3.831 18 O -0.177 6.177 19 C -0.391 4.391 20 H 0.089 0.911 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.271 1.271 27 C -0.257 4.257 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.406 0.594 38 H 0.404 0.596 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.187 -13.121 -1.068 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.381 5.381 4 C 0.297 3.703 5 O -0.409 6.409 6 C 0.037 3.963 7 H 0.134 0.866 8 C -0.220 4.220 9 N -0.390 5.390 10 C 0.409 3.591 11 O -0.448 6.448 12 N -0.326 5.326 13 C 0.106 3.894 14 C -0.226 4.226 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.764 3.236 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.279 4.279 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.242 0.758 38 H 0.239 0.761 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.800 -12.711 -0.619 26.989 hybrid contribution 0.379 -0.908 -1.304 1.634 sum -23.420 -13.620 -1.923 27.161 Atomic orbital electron populations 1.22016 0.94202 1.03423 1.02698 1.21338 0.94402 0.82628 1.02638 1.45974 1.06862 1.09321 1.75929 1.20722 0.82601 0.91286 0.75666 1.90719 1.55217 1.46074 1.48940 1.20531 0.81228 0.92580 1.01953 0.86557 1.22184 1.01073 1.02334 0.96406 1.44792 1.05369 1.20972 1.67858 1.15772 0.81737 0.82798 0.78793 1.90943 1.67510 1.34341 1.51981 1.42545 1.04442 1.26015 1.59571 1.17172 0.91525 0.88920 0.91820 1.20558 1.02329 1.02188 0.97494 1.20519 0.93583 0.95741 0.98339 1.20233 0.98184 1.04802 0.98973 1.19063 0.86744 0.90920 0.91798 1.84019 1.29418 1.58036 1.36536 1.21212 1.00910 1.28735 0.95895 0.89332 1.25262 0.94851 0.96796 0.99581 1.70023 1.08825 1.32479 1.38456 0.85809 0.78225 0.79137 0.80400 1.19579 1.20302 1.19582 1.20782 0.98228 1.03637 1.05268 0.91831 0.90647 0.91811 0.91314 0.91317 0.76178 0.91228 0.90154 0.91801 0.75818 0.76116 0.86239 0.86659 0.86424 0.92013 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.48 10.03 37.16 0.37 -0.10 16 2 C 0.11 0.63 6.39 -4.04 -0.03 0.60 16 3 N -0.73 -4.42 5.45 -60.30 -0.33 -4.75 16 4 C 0.51 4.82 7.22 -10.98 -0.08 4.74 16 5 O -0.53 -6.91 15.84 5.56 0.09 -6.82 16 6 C 0.15 1.40 2.99 -69.08 -0.21 1.20 16 7 H 0.12 1.14 7.58 -51.93 -0.39 0.75 16 8 C -0.16 -1.27 9.38 37.16 0.35 -0.92 16 9 N -0.73 -8.65 4.96 -59.81 -0.30 -8.94 16 10 C 0.71 10.95 8.26 -86.92 -0.72 10.23 16 11 O -0.57 -10.50 13.70 5.28 0.07 -10.43 16 12 N -0.68 -10.77 5.35 -14.24 -0.08 -10.84 16 13 C 0.20 3.92 6.27 -83.72 -0.52 3.39 16 14 C -0.20 -4.02 8.65 -39.34 -0.34 -4.36 16 15 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 16 C -0.20 -4.40 9.99 -39.36 -0.39 -4.79 16 17 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 18 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 19 C -0.39 -10.93 9.44 30.88 0.29 -10.64 16 20 H 0.09 2.28 5.30 -52.49 -0.28 2.01 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 23 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 C -0.26 -5.66 9.04 -39.21 -0.35 -6.02 16 28 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.40 1.39 7.89 -40.82 -0.32 1.06 16 34 H 0.07 0.34 7.56 -51.93 -0.39 -0.05 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.41 4.40 7.81 -40.82 -0.32 4.08 16 38 H 0.40 5.23 8.83 -40.82 -0.36 4.87 16 39 H 0.12 2.30 6.43 -52.49 -0.34 1.96 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.13 2.79 5.72 -52.49 -0.30 2.49 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -35.44 367.96 -7.29 -42.73 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.64 Total: 11.08 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.38 Total: -3.41 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.06 Total: -49.14 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.16 Total: -22.32 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.44 -7.29 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.075 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds