Wall clock time and date at job start Tue Mar 31 2020 12:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46958 * 2 1 4 4 C 1.34783 * 119.99946 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99852 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99962 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46887 * 60.00311 * 6 4 3 8 8 C 1.52998 * 109.47094 * 299.99905 * 6 4 3 9 9 N 1.46507 * 109.46826 * 180.02562 * 6 4 3 10 10 C 1.34775 * 119.99900 * 204.99996 * 9 6 4 11 11 O 1.21594 * 119.99846 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00175 * 180.02562 * 10 9 6 13 13 C 1.39942 * 120.00133 * 185.30218 * 12 10 9 14 14 C 1.38962 * 120.03378 * 33.56194 * 13 12 10 15 15 C 1.38161 * 120.06420 * 179.97438 * 14 13 12 16 16 C 1.38168 * 120.13635 * 359.97438 * 15 14 13 17 17 C 1.38906 * 120.07245 * 359.97438 * 16 15 14 18 18 O 1.35752 * 120.03361 * 180.02562 * 17 16 15 19 19 C 1.34832 * 117.00075 * 185.84476 * 18 17 16 20 20 H 1.07991 * 120.00017 * 5.40522 * 19 18 17 21 21 C 1.38649 * 119.99696 * 185.40735 * 19 18 17 22 22 N 1.31551 * 120.00502 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47141 * 59.99715 * 23 21 19 25 25 H 1.48499 * 109.47085 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47090 * 299.99882 * 23 21 19 27 27 C 1.38701 * 120.03248 * 213.53643 * 13 12 10 28 28 H 1.08996 * 109.46920 * 59.99667 * 1 2 3 29 29 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46750 * 299.99763 * 1 2 3 31 31 H 1.08995 * 109.46936 * 240.00032 * 2 1 3 32 32 H 1.09001 * 109.47365 * 120.00392 * 2 1 3 33 33 H 0.97005 * 120.00589 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.47204 * 60.00435 * 8 6 4 35 35 H 1.09000 * 109.46831 * 180.02562 * 8 6 4 36 36 H 1.08995 * 109.47209 * 300.00231 * 8 6 4 37 37 H 0.97003 * 120.00045 * 24.99640 * 9 6 4 38 38 H 0.97004 * 119.99240 * 5.29545 * 12 10 9 39 39 H 1.07997 * 119.96802 * 359.97438 * 14 13 12 40 40 H 1.07994 * 119.92777 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.95837 * 179.97438 * 16 15 14 42 42 H 0.97002 * 120.00491 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.07444 * 359.74702 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1316 0.7056 -0.0005 6 6 3.8458 3.0483 0.0001 7 1 3.4829 3.5616 0.8906 8 6 3.3351 3.7703 -1.2485 9 7 5.3108 3.0483 -0.0013 10 6 5.9852 4.1057 0.4921 11 8 5.3776 5.0596 0.9389 12 7 7.3329 4.1060 0.4904 13 6 8.0333 5.1519 1.1021 14 6 7.5142 5.7679 2.2344 15 6 8.2053 6.8002 2.8390 16 6 9.4143 7.2228 2.3206 17 6 9.9389 6.6103 1.1896 18 8 11.1271 7.0259 0.6812 19 6 11.5210 6.4738 -0.4841 20 1 10.8614 5.8025 -1.0138 21 6 12.7729 6.7678 -1.0023 22 7 13.5763 7.5859 -0.3573 23 14 13.3183 6.0035 -2.6172 24 1 12.3801 6.4042 -3.6963 25 1 14.6863 6.4751 -2.9509 26 1 13.3218 4.5241 -2.4884 27 6 9.2464 5.5743 0.5790 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 2.2452 3.7703 -1.2479 35 1 3.6988 4.7978 -1.2483 36 1 3.6980 3.2570 -2.1389 37 1 5.7955 2.2871 -0.3573 38 1 7.8174 3.3811 0.0653 39 1 6.5696 5.4395 2.6421 40 1 7.8001 7.2771 3.7191 41 1 9.9519 8.0303 2.7953 42 1 14.4520 7.7919 -0.7201 43 1 9.6541 5.0941 -0.2983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048514387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:15 Heat of formation + Delta-G solvation = -90.850151 kcal Electronic energy + Delta-G solvation = -26064.695128 eV Core-core repulsion = 22109.839455 eV Total energy + Delta-G solvation = -3954.855673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -41.91924 -41.00050 -40.29832 -38.28781 -36.51506 -36.09338 -35.64106 -34.22229 -32.58494 -31.07026 -30.59391 -29.73666 -27.28589 -25.89819 -24.13299 -23.48176 -23.16848 -21.85806 -21.42455 -20.30141 -19.44889 -19.29264 -18.01792 -17.55127 -17.00456 -16.94674 -16.75380 -16.43450 -16.12031 -15.89756 -15.69296 -15.46198 -15.38507 -15.14028 -14.58664 -14.53634 -14.17922 -13.83183 -13.54945 -13.43456 -13.30629 -13.18851 -12.76462 -12.72057 -12.67227 -12.64227 -12.39302 -12.36451 -12.13324 -11.56446 -11.30316 -11.16156 -11.05074 -10.70847 -10.34124 -10.16394 -9.32268 -8.83196 -8.44824 -6.13373 0.45881 0.72797 1.33312 1.36346 1.42492 1.47031 1.52281 1.96865 2.17881 2.19394 2.86178 3.06664 3.19875 3.51661 3.55340 3.98063 4.07780 4.13074 4.14629 4.24000 4.35225 4.47091 4.52754 4.60250 4.64401 4.72730 4.76427 4.92937 5.04091 5.07016 5.12404 5.18202 5.25546 5.29326 5.33487 5.39411 5.48845 5.69425 5.70477 5.89505 6.03352 6.22076 6.39850 6.84068 6.99455 7.07196 7.37086 7.79321 8.77835 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.002405 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.712995 B =11640.970690 C =12694.611713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.110 3.890 3 N -0.710 5.710 4 C 0.515 3.485 5 O -0.573 6.573 6 C 0.144 3.856 7 H 0.118 0.882 8 C -0.155 4.155 9 N -0.719 5.719 10 C 0.709 3.291 11 O -0.600 6.600 12 N -0.675 5.675 13 C 0.206 3.794 14 C -0.198 4.198 15 C -0.050 4.050 16 C -0.214 4.214 17 C 0.135 3.865 18 O -0.226 6.226 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.017 2.983 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.261 4.261 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.419 0.581 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.418 0.582 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.224 -14.683 -1.729 30.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.363 5.363 4 C 0.300 3.700 5 O -0.453 6.453 6 C 0.035 3.965 7 H 0.135 0.865 8 C -0.213 4.213 9 N -0.376 5.376 10 C 0.410 3.590 11 O -0.479 6.479 12 N -0.322 5.322 13 C 0.111 3.889 14 C -0.219 4.219 15 C -0.068 4.068 16 C -0.234 4.234 17 C 0.084 3.916 18 O -0.132 6.132 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.836 3.164 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.180 1.180 27 C -0.283 4.283 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.256 0.744 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.249 0.751 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.173 0.827 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.949 -14.321 -1.282 30.545 hybrid contribution 0.997 -0.500 -0.946 1.462 sum -25.952 -14.821 -2.227 29.969 Atomic orbital electron populations 1.21972 0.91788 1.04247 1.03488 1.21429 0.96285 0.81879 1.01710 1.45896 1.05981 1.10355 1.74060 1.20649 0.83374 0.90548 0.75406 1.90709 1.56402 1.46961 1.51183 1.20740 0.79688 0.93106 1.02961 0.86466 1.22145 1.03249 1.00560 0.95366 1.44744 1.06475 1.19916 1.66488 1.15817 0.81327 0.83179 0.78678 1.90919 1.67949 1.35614 1.53377 1.42437 1.04849 1.25493 1.59429 1.17181 0.90769 0.89311 0.91649 1.20868 1.02394 1.01675 0.96973 1.20916 0.92049 0.94971 0.98894 1.20474 0.99283 1.05099 0.98568 1.19587 0.86365 0.92444 0.93221 1.83983 1.31603 1.60087 1.37542 1.21723 1.01655 1.29034 0.96412 0.88192 1.26562 0.94551 0.97162 1.03699 1.70173 1.09536 1.34938 1.40994 0.84672 0.77844 0.78707 0.75147 1.18376 1.19734 1.18000 1.20794 0.99031 1.03290 1.05224 0.90846 0.89866 0.91146 0.92086 0.92520 0.74366 0.87780 0.92224 0.91679 0.75094 0.74470 0.85075 0.82707 0.86196 0.91851 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 10.03 71.98 0.72 0.25 16 2 C 0.11 1.02 6.39 86.38 0.55 1.57 16 3 N -0.71 -6.91 5.45 -463.06 -2.52 -9.43 16 4 C 0.51 8.74 7.22 87.66 0.63 9.38 16 5 O -0.57 -14.23 15.84 -3.03 -0.05 -14.27 16 6 C 0.14 2.46 2.99 44.24 0.13 2.59 16 7 H 0.12 2.04 7.58 -2.39 -0.02 2.03 16 8 C -0.15 -2.06 9.38 71.98 0.68 -1.39 16 9 N -0.72 -15.83 4.96 -461.39 -2.29 -18.11 16 10 C 0.71 20.77 8.26 179.05 1.48 22.25 16 11 O -0.60 -21.01 13.70 -4.01 -0.05 -21.06 16 12 N -0.67 -20.44 5.35 -317.23 -1.70 -22.14 16 13 C 0.21 7.89 6.27 38.13 0.24 8.13 16 14 C -0.20 -7.40 8.65 22.43 0.19 -7.20 16 15 C -0.05 -1.82 10.03 22.23 0.22 -1.60 16 16 C -0.21 -9.39 9.99 22.41 0.22 -9.17 16 17 C 0.14 6.83 6.64 22.56 0.15 6.98 16 18 O -0.23 -13.60 9.76 -22.77 -0.22 -13.82 16 19 C -0.41 -23.88 9.44 67.92 0.64 -23.24 16 20 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 21 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 22 N -0.92 -56.26 13.67 21.61 0.30 -55.97 16 23 Si 1.02 42.65 29.55 68.60 2.03 44.67 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 27 C -0.26 -11.62 9.04 22.51 0.20 -11.42 16 28 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 1.50 7.89 -92.70 -0.73 0.77 16 34 H 0.10 0.65 7.56 -2.39 -0.02 0.63 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.41 8.33 7.81 -92.71 -0.72 7.60 16 38 H 0.42 10.24 8.83 -92.71 -0.82 9.42 16 39 H 0.13 4.69 6.43 -2.91 -0.02 4.67 16 40 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.13 5.59 5.72 -2.91 -0.02 5.58 16 Total: -1.00 -80.20 367.96 0.83 -79.36 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -1.19 Total: 34.43 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 6.53 Total: -3.65 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -6.21 Total: -105.65 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.33 Total: -49.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -80.20 0.83 -79.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.487 kcal (2) G-P(sol) polarization free energy of solvation -80.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds