Wall clock time and date at job start Tue Mar 31 2020 13:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99888 * 2 1 4 4 O 1.21547 * 120.00003 * 175.46594 * 3 2 1 5 5 C 1.47884 * 119.99801 * 355.45803 * 3 2 1 6 6 C 1.39922 * 120.02440 * 221.51078 * 5 3 2 7 7 C 1.38329 * 120.35787 * 179.71683 * 6 5 3 8 8 C 1.37757 * 120.41105 * 0.56264 * 7 6 5 9 9 C 1.40747 * 120.03926 * 359.71718 * 8 7 6 10 10 C 1.41431 * 120.18003 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00176 * 209.19838 * 10 9 8 12 12 C 1.39942 * 119.99884 * 29.19431 * 10 9 8 13 13 N 1.30825 * 119.99863 * 10.64052 * 12 10 9 14 14 Si 1.86796 * 120.00198 * 190.64309 * 12 10 9 15 15 H 1.48501 * 109.47416 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47243 * 209.99997 * 14 12 10 17 17 H 1.48501 * 109.47222 * 330.00189 * 14 12 10 18 18 C 1.38992 * 120.02676 * 41.78861 * 5 3 2 19 19 C 1.46503 * 120.00355 * 179.97438 * 2 1 3 20 20 C 1.54349 * 110.81939 * 300.00190 * 19 2 1 21 21 C 1.51374 * 105.25238 * 144.51953 * 20 19 2 22 22 C 1.38360 * 130.49998 * 162.66140 * 21 20 19 23 23 C 1.38101 * 120.25913 * 180.11048 * 22 21 20 24 24 C 1.38255 * 119.93653 * 0.09125 * 23 22 21 25 25 C 1.38106 * 119.93597 * 0.02562 * 24 23 22 26 26 C 1.38380 * 109.66890 * 342.93184 * 21 20 19 27 27 C 1.51374 * 109.78432 * 359.86807 * 26 21 20 28 28 H 1.09005 * 109.47147 * 275.24862 * 1 2 3 29 29 H 1.08995 * 109.47113 * 35.25001 * 1 2 3 30 30 H 1.09008 * 109.46982 * 155.24777 * 1 2 3 31 31 H 1.07999 * 119.82186 * 359.97438 * 6 5 3 32 32 H 1.07997 * 119.79329 * 180.25303 * 7 6 5 33 33 H 1.07999 * 119.97990 * 179.73790 * 8 7 6 34 34 H 0.97001 * 120.00123 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.20167 * 359.97438 * 18 5 3 36 36 H 1.08991 * 110.88673 * 176.48752 * 19 2 1 37 37 H 1.08998 * 110.30387 * 263.49417 * 20 19 2 38 38 H 1.09005 * 110.30343 * 25.55106 * 20 19 2 39 39 H 1.07996 * 119.84658 * 0.20860 * 22 21 20 40 40 H 1.08003 * 120.03280 * 180.02562 * 23 22 21 41 41 H 1.08006 * 120.03248 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.89440 * 180.02562 * 25 24 23 43 43 H 1.09004 * 110.30266 * 258.35028 * 27 26 21 44 44 H 1.09000 * 110.38720 * 136.23639 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1689 0.0832 5 6 1.4028 2.4459 -0.1014 6 6 1.8938 3.4738 -0.9139 7 6 1.2079 4.6705 -1.0184 8 6 0.0400 4.8686 -0.3152 9 6 -0.4662 3.8483 0.5117 10 6 -1.6653 4.0482 1.2345 11 1 -1.8208 3.5386 2.1739 12 6 -2.6501 4.9064 0.7326 13 7 -2.5607 5.3597 -0.4914 14 14 -4.0922 5.4049 1.8101 15 1 -3.7477 6.6409 2.5576 16 1 -5.2825 5.6568 0.9587 17 1 -4.3929 4.3132 2.7708 18 6 0.2259 2.6297 0.6148 19 6 2.1976 -1.2687 0.0006 20 6 1.8472 -2.1040 1.2503 21 6 1.8599 -3.5438 0.7834 22 6 1.9334 -4.7219 1.5053 23 6 1.9318 -5.9391 0.8528 24 6 1.8584 -5.9821 -0.5271 25 6 1.7874 -4.8078 -1.2505 26 6 1.7884 -3.5862 -0.5979 27 6 1.7195 -2.1787 -1.1508 28 1 -0.3634 0.0940 1.0234 29 1 -0.3633 0.8392 -0.5931 30 1 -0.3633 -0.9333 -0.4303 31 1 2.8111 3.3306 -1.4657 32 1 1.5930 5.4563 -1.6514 33 1 -0.4876 5.8072 -0.3987 34 1 -3.2431 5.9549 -0.8392 35 1 -0.1546 1.8405 1.2463 36 1 3.2721 -1.0970 -0.0619 37 1 2.5950 -1.9521 2.0286 38 1 0.8576 -1.8350 1.6198 39 1 1.9907 -4.6891 2.5832 40 1 1.9889 -6.8565 1.4199 41 1 1.8574 -6.9332 -1.0390 42 1 1.7296 -4.8422 -2.3283 43 1 0.6948 -1.9311 -1.4281 44 1 2.3792 -2.0766 -2.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055628375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:39 Heat of formation + Delta-G solvation = 13.965958 kcal Electronic energy + Delta-G solvation = -25839.578316 eV Core-core repulsion = 22300.117073 eV Total energy + Delta-G solvation = -3539.461243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57493 -39.27358 -37.21296 -36.23596 -33.91484 -33.56169 -31.57035 -30.10665 -29.90597 -28.18861 -27.43745 -26.60259 -25.32390 -23.34390 -21.90402 -21.08466 -20.88197 -20.44444 -19.02858 -17.45779 -16.68752 -16.28645 -15.84904 -15.49677 -15.38017 -15.14339 -14.77094 -14.56035 -13.99937 -13.48210 -13.45962 -13.26869 -13.06120 -13.01634 -12.68265 -12.54852 -12.38391 -12.24059 -11.90255 -11.67199 -11.41904 -11.33488 -11.25261 -11.08687 -11.03078 -10.92169 -10.70176 -10.52092 -10.28791 -9.55145 -9.30863 -9.11266 -8.96013 -8.61692 -8.37316 -7.63120 -7.49847 -6.79530 -4.48953 1.20463 1.24461 2.26878 2.70448 3.03470 3.06259 3.10437 3.25157 3.56647 3.62213 3.88501 4.31293 4.53417 4.57242 4.84249 4.86758 4.97026 5.00674 5.09983 5.34051 5.38618 5.42979 5.49738 5.51781 5.63938 5.69060 5.74267 5.81787 5.94279 6.02916 6.09392 6.17747 6.25775 6.28565 6.34939 6.34953 6.52694 6.73537 6.82350 6.85409 6.89122 7.00244 7.15364 7.32819 7.58848 7.73736 7.88074 7.91343 8.07816 8.48466 8.68248 8.77677 8.80434 10.15191 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.002903 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.068741 B = 9643.943304 C =10607.826135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.571 3.429 4 O -0.553 6.553 5 C -0.115 4.115 6 C -0.177 4.177 7 C -0.116 4.116 8 C -0.133 4.133 9 C 0.101 3.899 10 C -0.464 4.464 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.804 5.804 14 Si 0.911 3.089 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.188 4.188 19 C 0.145 3.855 20 C -0.095 4.095 21 C -0.089 4.089 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.107 4.107 26 C -0.091 4.091 27 C -0.097 4.097 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.280 0.720 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -16.172 -0.119 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.363 3.637 4 O -0.431 6.431 5 C -0.118 4.118 6 C -0.197 4.197 7 C -0.134 4.134 8 C -0.153 4.153 9 C 0.099 3.901 10 C -0.495 4.495 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.430 5.430 14 Si 0.736 3.264 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.208 4.208 19 C 0.041 3.959 20 C -0.133 4.133 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.091 4.091 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.109 0.891 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.242 -16.006 -0.245 16.332 hybrid contribution -0.864 0.135 0.388 0.956 sum 2.378 -15.870 0.143 16.048 Atomic orbital electron populations 1.22124 0.79065 1.03267 1.02434 1.47695 1.07138 1.04806 1.74436 1.19012 0.86821 0.83943 0.73916 1.90668 1.14367 1.87589 1.50509 1.19228 0.96943 0.92677 1.02971 1.20375 1.00666 0.94296 1.04382 1.20683 0.96381 0.96123 1.00232 1.21589 0.94552 0.99764 0.99352 1.17547 0.91870 0.89541 0.91184 1.19519 0.99908 1.23512 1.06516 0.90422 1.25861 0.99553 0.94076 0.94741 1.69761 1.33573 1.25725 1.13945 0.86263 0.79872 0.79870 0.80422 1.19367 1.20325 1.18669 1.21432 0.96541 0.98064 1.04809 1.21548 0.98374 0.82793 0.93196 1.21453 1.03220 0.89954 0.98705 1.20544 0.99350 0.94817 0.94277 1.20594 1.00811 0.91327 0.99773 1.21015 1.00998 0.97405 0.94622 1.21015 1.01036 0.97815 0.94226 1.20626 1.00834 0.91227 0.99815 1.20560 0.99549 0.94585 0.94426 1.21473 1.03123 0.90099 0.98786 0.92263 0.88926 0.91818 0.88596 0.88618 0.85885 0.90860 0.87634 0.87108 0.90218 0.89377 0.86261 0.86023 0.86026 0.86253 0.89105 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 7.68 59.85 0.46 1.54 16 2 N -0.61 -10.00 2.89 -173.41 -0.50 -10.50 16 3 C 0.57 11.71 7.32 -12.31 -0.09 11.62 16 4 O -0.55 -12.62 16.34 5.32 0.09 -12.54 16 5 C -0.12 -2.55 5.14 -105.04 -0.54 -3.09 16 6 C -0.18 -3.99 9.65 -38.92 -0.38 -4.37 16 7 C -0.12 -2.62 10.01 -39.72 -0.40 -3.02 16 8 C -0.13 -3.27 8.65 -38.81 -0.34 -3.61 16 9 C 0.10 2.50 5.54 -106.87 -0.59 1.91 16 10 C -0.46 -11.50 9.06 -37.73 -0.34 -11.84 16 11 H 0.08 1.85 7.87 -52.49 -0.41 1.44 16 12 C 0.07 1.76 5.25 -17.34 -0.09 1.67 16 13 N -0.80 -19.73 10.86 55.55 0.60 -19.12 16 14 Si 0.91 17.88 29.57 -169.99 -5.03 12.86 16 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 16 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 18 C -0.19 -4.24 7.37 -38.44 -0.28 -4.53 16 19 C 0.15 2.05 3.48 -66.52 -0.23 1.82 16 20 C -0.10 -1.18 6.39 -26.85 -0.17 -1.35 16 21 C -0.09 -1.05 6.15 -104.19 -0.64 -1.69 16 22 C -0.11 -1.11 10.03 -39.59 -0.40 -1.51 16 23 C -0.12 -1.13 10.05 -39.63 -0.40 -1.53 16 24 C -0.12 -1.13 10.05 -39.62 -0.40 -1.53 16 25 C -0.11 -1.10 10.04 -39.53 -0.40 -1.49 16 26 C -0.09 -1.06 6.14 -104.14 -0.64 -1.70 16 27 C -0.10 -1.17 6.31 -26.85 -0.17 -1.34 16 28 H 0.06 0.85 6.83 -51.93 -0.35 0.49 16 29 H 0.09 1.57 6.01 -51.93 -0.31 1.25 16 30 H 0.06 0.77 6.07 -51.92 -0.32 0.46 16 31 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 3.12 6.24 -52.49 -0.33 2.80 16 34 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 35 H 0.11 2.18 5.54 -52.49 -0.29 1.89 16 36 H 0.11 1.74 7.03 -51.93 -0.37 1.38 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.07 7.19 -51.93 -0.37 0.70 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -28.05 356.95 -11.07 -39.12 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.58 Total: 8.84 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -6.03 Total: -24.04 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.10 Total: -29.62 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.05 -11.07 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055628375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.087 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds