Wall clock time and date at job start Tue Mar 31 2020 13:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99888 * 2 1 4 4 O 1.21547 * 120.00003 * 175.46594 * 3 2 1 5 5 C 1.47884 * 119.99801 * 355.45803 * 3 2 1 6 6 C 1.39922 * 120.02440 * 221.51078 * 5 3 2 7 7 C 1.38329 * 120.35787 * 179.71683 * 6 5 3 8 8 C 1.37757 * 120.41105 * 0.56264 * 7 6 5 9 9 C 1.40747 * 120.03926 * 359.71718 * 8 7 6 10 10 C 1.41431 * 120.18003 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00176 * 209.19838 * 10 9 8 12 12 C 1.39942 * 119.99884 * 29.19431 * 10 9 8 13 13 N 1.30825 * 119.99863 * 10.64052 * 12 10 9 14 14 Si 1.86796 * 120.00198 * 190.64309 * 12 10 9 15 15 H 1.48501 * 109.47416 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47243 * 209.99997 * 14 12 10 17 17 H 1.48501 * 109.47222 * 330.00189 * 14 12 10 18 18 C 1.38992 * 120.02676 * 41.78861 * 5 3 2 19 19 C 1.46503 * 120.00355 * 179.97438 * 2 1 3 20 20 C 1.54349 * 110.81939 * 300.00190 * 19 2 1 21 21 C 1.51374 * 105.25238 * 144.51953 * 20 19 2 22 22 C 1.38360 * 130.49998 * 162.66140 * 21 20 19 23 23 C 1.38101 * 120.25913 * 180.11048 * 22 21 20 24 24 C 1.38255 * 119.93653 * 0.09125 * 23 22 21 25 25 C 1.38106 * 119.93597 * 0.02562 * 24 23 22 26 26 C 1.38380 * 109.66890 * 342.93184 * 21 20 19 27 27 C 1.51374 * 109.78432 * 359.86807 * 26 21 20 28 28 H 1.09005 * 109.47147 * 275.24862 * 1 2 3 29 29 H 1.08995 * 109.47113 * 35.25001 * 1 2 3 30 30 H 1.09008 * 109.46982 * 155.24777 * 1 2 3 31 31 H 1.07999 * 119.82186 * 359.97438 * 6 5 3 32 32 H 1.07997 * 119.79329 * 180.25303 * 7 6 5 33 33 H 1.07999 * 119.97990 * 179.73790 * 8 7 6 34 34 H 0.97001 * 120.00123 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.20167 * 359.97438 * 18 5 3 36 36 H 1.08991 * 110.88673 * 176.48752 * 19 2 1 37 37 H 1.08998 * 110.30387 * 263.49417 * 20 19 2 38 38 H 1.09005 * 110.30343 * 25.55106 * 20 19 2 39 39 H 1.07996 * 119.84658 * 0.20860 * 22 21 20 40 40 H 1.08003 * 120.03280 * 180.02562 * 23 22 21 41 41 H 1.08006 * 120.03248 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.89440 * 180.02562 * 25 24 23 43 43 H 1.09004 * 110.30266 * 258.35028 * 27 26 21 44 44 H 1.09000 * 110.38720 * 136.23639 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1689 0.0832 5 6 1.4028 2.4459 -0.1014 6 6 1.8938 3.4738 -0.9139 7 6 1.2079 4.6705 -1.0184 8 6 0.0400 4.8686 -0.3152 9 6 -0.4662 3.8483 0.5117 10 6 -1.6653 4.0482 1.2345 11 1 -1.8208 3.5386 2.1739 12 6 -2.6501 4.9064 0.7326 13 7 -2.5607 5.3597 -0.4914 14 14 -4.0922 5.4049 1.8101 15 1 -3.7477 6.6409 2.5576 16 1 -5.2825 5.6568 0.9587 17 1 -4.3929 4.3132 2.7708 18 6 0.2259 2.6297 0.6148 19 6 2.1976 -1.2687 0.0006 20 6 1.8472 -2.1040 1.2503 21 6 1.8599 -3.5438 0.7834 22 6 1.9334 -4.7219 1.5053 23 6 1.9318 -5.9391 0.8528 24 6 1.8584 -5.9821 -0.5271 25 6 1.7874 -4.8078 -1.2505 26 6 1.7884 -3.5862 -0.5979 27 6 1.7195 -2.1787 -1.1508 28 1 -0.3634 0.0940 1.0234 29 1 -0.3633 0.8392 -0.5931 30 1 -0.3633 -0.9333 -0.4303 31 1 2.8111 3.3306 -1.4657 32 1 1.5930 5.4563 -1.6514 33 1 -0.4876 5.8072 -0.3987 34 1 -3.2431 5.9549 -0.8392 35 1 -0.1546 1.8405 1.2463 36 1 3.2721 -1.0970 -0.0619 37 1 2.5950 -1.9521 2.0286 38 1 0.8576 -1.8350 1.6198 39 1 1.9907 -4.6891 2.5832 40 1 1.9889 -6.8565 1.4199 41 1 1.8574 -6.9332 -1.0390 42 1 1.7296 -4.8422 -2.3283 43 1 0.6948 -1.9311 -1.4281 44 1 2.3792 -2.0766 -2.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055628375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:38 Heat of formation + Delta-G solvation = 2.610020 kcal Electronic energy + Delta-G solvation = -25840.070746 eV Core-core repulsion = 22300.117073 eV Total energy + Delta-G solvation = -3539.953673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71879 -40.57108 -38.90140 -37.49148 -35.54244 -34.94327 -32.36509 -31.83107 -31.61507 -29.29774 -28.34116 -27.92516 -27.14936 -24.73705 -23.01591 -22.62997 -21.85464 -21.78872 -20.48652 -19.09763 -18.07752 -17.48723 -17.18942 -16.86262 -16.56044 -16.54113 -16.24841 -15.68547 -15.46116 -14.93726 -14.73889 -14.42437 -14.24802 -14.19659 -14.03783 -13.70903 -13.60040 -13.53593 -13.38711 -13.21708 -12.86060 -12.71123 -12.57472 -12.41866 -12.23659 -12.12294 -12.08792 -11.95266 -11.68614 -11.34406 -11.08187 -10.79476 -9.79387 -9.69032 -9.44748 -9.42427 -9.34035 -8.58244 -6.37388 0.41969 0.47899 0.50287 0.93595 1.43185 1.50266 1.55179 1.80113 1.98803 2.24264 2.76630 2.84035 3.39686 3.49681 3.66366 3.77033 3.98809 4.03620 4.06401 4.18564 4.22021 4.28812 4.36940 4.52408 4.60589 4.65084 4.65977 4.68027 4.79475 4.85238 4.88155 4.97843 5.03055 5.06010 5.15139 5.17262 5.20798 5.33720 5.44177 5.53312 5.62113 5.62875 5.71334 5.80557 5.99449 6.04378 6.11213 6.21524 6.29990 6.62708 6.92645 6.94462 7.10284 8.38363 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.002903 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.068741 B = 9643.943304 C =10607.826135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.596 5.596 3 C 0.568 3.432 4 O -0.583 6.583 5 C -0.119 4.119 6 C -0.188 4.188 7 C -0.114 4.114 8 C -0.157 4.157 9 C 0.075 3.925 10 C -0.492 4.492 11 H 0.080 0.920 12 C 0.036 3.964 13 N -0.832 5.832 14 Si 0.981 3.019 15 H -0.267 1.267 16 H -0.271 1.271 17 H -0.257 1.257 18 C -0.183 4.183 19 C 0.140 3.860 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.106 4.106 27 C -0.089 4.089 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.287 0.713 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.095 0.905 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -18.539 0.281 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C 0.359 3.641 4 O -0.464 6.464 5 C -0.122 4.122 6 C -0.208 4.208 7 C -0.132 4.132 8 C -0.177 4.177 9 C 0.073 3.927 10 C -0.521 4.521 11 H 0.098 0.902 12 C -0.178 4.178 13 N -0.459 5.459 14 Si 0.803 3.197 15 H -0.192 1.192 16 H -0.196 1.196 17 H -0.180 1.180 18 C -0.203 4.203 19 C 0.036 3.964 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.107 4.107 27 C -0.126 4.126 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.113 0.887 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.308 -18.410 0.147 18.555 hybrid contribution -0.516 0.753 0.221 0.939 sum 1.791 -17.657 0.368 17.752 Atomic orbital electron populations 1.22175 0.77818 1.04039 1.02774 1.47667 1.07869 1.04572 1.72532 1.18794 0.86384 0.84575 0.74309 1.90648 1.15374 1.88062 1.52344 1.19479 0.96773 0.93628 1.02312 1.20586 1.01042 0.94495 1.04724 1.20891 0.95650 0.96799 0.99857 1.21560 0.95596 0.99548 1.00986 1.17886 0.92592 0.90407 0.91790 1.19766 1.00551 1.24892 1.06938 0.90175 1.26664 1.01920 0.93479 0.95761 1.69824 1.34690 1.26042 1.15302 0.85201 0.76518 0.79420 0.78596 1.19159 1.19579 1.18039 1.21557 0.96367 0.97760 1.04641 1.21666 0.97121 0.82057 0.95541 1.21325 1.03180 0.90497 0.97554 1.20541 1.00890 0.94652 0.94587 1.20848 1.00615 0.91307 1.00636 1.21383 0.99695 0.97945 0.95008 1.21391 0.99662 0.98564 0.94427 1.20891 1.00506 0.91026 1.00841 1.20573 1.00932 0.94656 0.94503 1.21354 1.03221 0.90223 0.97814 0.91506 0.91065 0.88706 0.87798 0.86388 0.87259 0.90231 0.86098 0.89062 0.90503 0.89140 0.84978 0.83431 0.83380 0.84756 0.88668 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 7.68 127.77 0.98 3.09 16 2 N -0.60 -19.45 2.89 -820.83 -2.37 -21.82 16 3 C 0.57 23.56 7.32 86.80 0.64 24.20 16 4 O -0.58 -27.11 16.34 -3.86 -0.06 -27.17 16 5 C -0.12 -5.35 5.14 -20.13 -0.10 -5.45 16 6 C -0.19 -8.61 9.65 22.70 0.22 -8.39 16 7 C -0.11 -5.23 10.01 22.18 0.22 -5.01 16 8 C -0.16 -7.96 8.65 22.77 0.20 -7.76 16 9 C 0.08 3.83 5.54 -21.32 -0.12 3.71 16 10 C -0.49 -24.68 9.06 23.47 0.21 -24.47 16 11 H 0.08 3.84 7.87 -2.91 -0.02 3.82 16 12 C 0.04 1.70 5.25 85.26 0.45 2.15 16 13 N -0.83 -41.38 10.86 21.83 0.24 -41.14 16 14 Si 0.98 36.34 29.57 68.60 2.03 38.37 16 15 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 16 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 17 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 18 C -0.18 -8.37 7.37 23.01 0.17 -8.20 16 19 C 0.14 3.90 3.48 45.91 0.16 4.06 16 20 C -0.09 -2.11 6.39 30.52 0.20 -1.91 16 21 C -0.11 -2.35 6.15 -19.59 -0.12 -2.47 16 22 C -0.12 -2.16 10.03 22.27 0.22 -1.94 16 23 C -0.12 -1.89 10.05 22.24 0.22 -1.66 16 24 C -0.12 -1.87 10.05 22.24 0.22 -1.64 16 25 C -0.11 -2.08 10.04 22.30 0.22 -1.85 16 26 C -0.11 -2.31 6.14 -19.55 -0.12 -2.43 16 27 C -0.09 -2.04 6.31 30.52 0.19 -1.85 16 28 H 0.07 1.84 6.83 -2.38 -0.02 1.82 16 29 H 0.07 2.40 6.01 -2.39 -0.01 2.38 16 30 H 0.09 2.13 6.07 -2.38 -0.01 2.11 16 31 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.11 5.76 6.24 -2.91 -0.02 5.74 16 34 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 35 H 0.12 5.00 5.54 -2.91 -0.02 4.99 16 36 H 0.09 2.94 7.03 -2.39 -0.02 2.92 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.10 7.19 -2.38 -0.02 2.08 16 39 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.10 2.08 5.95 -2.39 -0.01 2.06 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -61.16 356.95 4.92 -56.25 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 1.02 Total: 33.33 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 4.06 Total: -37.82 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -2.14 Total: -62.96 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.06 Total: -27.17 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -61.16 4.92 -56.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055628375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.856 kcal (2) G-P(sol) polarization free energy of solvation -61.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds