Wall clock time and date at job start Tue Mar 31 2020 13:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00487 * 2 1 4 4 O 1.21541 * 119.99860 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00342 * 179.97438 * 3 2 1 6 6 C 1.34775 * 120.00006 * 180.02562 * 5 3 2 7 7 O 1.21237 * 120.00184 * 0.02562 * 6 5 3 8 8 C 1.50698 * 120.00065 * 180.02562 * 6 5 3 9 9 N 1.46498 * 109.47488 * 179.97438 * 8 6 5 10 10 C 1.39664 * 120.00039 * 179.97438 * 9 8 6 11 11 C 1.38973 * 120.04703 * 359.97438 * 10 9 8 12 12 C 1.38116 * 120.03003 * 180.02562 * 11 10 9 13 13 C 1.38216 * 120.13578 * 359.74695 * 12 11 10 14 14 C 1.38779 * 120.08401 * 0.51068 * 13 12 11 15 15 O 1.35897 * 120.00949 * 179.76812 * 14 13 12 16 16 C 1.42898 * 117.00481 * 359.71829 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 C 1.38609 * 119.96517 * 359.48769 * 14 13 12 27 27 H 1.08998 * 109.46815 * 59.99443 * 1 2 3 28 28 H 1.08995 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47051 * 300.00003 * 1 2 3 30 30 H 0.97002 * 119.99960 * 180.02562 * 2 1 3 31 31 H 0.97004 * 119.99530 * 0.02562 * 5 3 2 32 32 H 1.09006 * 109.47342 * 59.99530 * 8 6 5 33 33 H 1.09008 * 109.46640 * 300.00007 * 8 6 5 34 34 H 0.97000 * 119.99514 * 359.97438 * 9 8 6 35 35 H 1.07996 * 119.98339 * 0.02562 * 11 10 9 36 36 H 1.08007 * 119.92769 * 179.97438 * 12 11 10 37 37 H 1.07991 * 119.95689 * 180.26971 * 13 12 11 38 38 H 1.09002 * 109.47259 * 300.00417 * 16 15 14 39 39 H 1.09001 * 109.47074 * 60.00439 * 16 15 14 40 40 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 41 41 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 42 42 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 43 43 H 1.08006 * 120.06150 * 180.23058 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5313 2.2197 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.1606 2.3342 0.0010 7 8 3.5545 3.3842 0.0015 8 6 5.6676 2.3342 0.0010 9 7 6.1561 3.7154 0.0010 10 6 7.5292 3.9705 0.0016 11 6 8.4331 2.9149 0.0027 12 6 9.7909 3.1676 0.0037 13 6 10.2544 4.4697 -0.0015 14 6 9.3565 5.5278 0.0028 15 8 9.8139 6.8074 0.0023 16 6 11.2312 6.9899 0.0036 17 6 11.5529 8.4856 0.0035 18 6 13.0475 8.6781 0.0042 19 1 13.7025 7.8193 0.0042 20 6 13.5789 9.9503 0.0037 21 7 12.7812 10.9960 0.0032 22 14 15.4316 10.1889 0.0053 23 1 16.1012 8.8634 0.0063 24 1 15.8343 10.9454 -1.2074 25 1 15.8320 10.9472 1.2175 26 6 7.9929 5.2786 0.0016 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 3.9717 0.3269 0.0005 32 1 6.0310 1.8207 -0.8892 33 1 6.0309 1.8199 0.8909 34 1 5.5257 4.4527 0.0007 35 1 8.0736 1.8965 0.0027 36 1 10.4919 2.3459 0.0050 37 1 11.3167 4.6639 -0.0051 38 1 11.6563 6.5272 0.8943 39 1 11.6580 6.5261 -0.8857 40 1 11.1277 8.9487 -0.8870 41 1 11.1262 8.9492 0.8929 42 1 13.1551 11.8911 0.0025 43 1 7.2927 6.1009 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055876992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:44 Heat of formation + Delta-G solvation = -71.705526 kcal Electronic energy + Delta-G solvation = -25002.266016 eV Core-core repulsion = 21048.240516 eV Total energy + Delta-G solvation = -3954.025500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68980 -39.82587 -39.06639 -37.59631 -35.27652 -35.04934 -34.83628 -33.31455 -30.99202 -30.22343 -28.94063 -27.96034 -26.66618 -24.91792 -22.93911 -22.55656 -21.51236 -21.04135 -20.32971 -19.66830 -18.42601 -17.50141 -16.85345 -16.48253 -16.28512 -15.77369 -15.64370 -15.51842 -15.23330 -15.22357 -15.04175 -14.64030 -14.19041 -14.03257 -13.89331 -13.35199 -13.29375 -12.86064 -12.65837 -12.61877 -12.29919 -11.61613 -11.57171 -11.47456 -11.22738 -10.91782 -10.71543 -10.67602 -10.43446 -10.22025 -10.09329 -9.78977 -9.74586 -9.61453 -9.24755 -8.42447 -7.96492 -7.42375 -6.07236 -4.11683 1.51608 1.68945 1.69948 1.82458 2.73227 3.05005 3.28765 3.35605 3.38370 3.40151 3.93351 4.01456 4.08408 4.44860 4.56681 4.70396 4.77950 4.95169 5.03818 5.19781 5.27134 5.29247 5.49009 5.50364 5.52697 5.68090 5.75954 5.81323 6.08642 6.09399 6.10142 6.34611 6.58776 6.65605 6.70633 6.85331 6.88239 7.29077 7.44062 7.54144 7.60657 7.68729 7.81949 7.86147 8.13239 8.27865 8.94295 9.52521 11.04400 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.043520 B = 0.001625 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.223700 B =17229.787938 C =17841.960400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.742 5.742 3 C 0.691 3.309 4 O -0.526 6.526 5 N -0.689 5.689 6 C 0.513 3.487 7 O -0.458 6.458 8 C 0.115 3.885 9 N -0.740 5.740 10 C 0.247 3.753 11 C -0.247 4.247 12 C -0.037 4.037 13 C -0.261 4.261 14 C 0.189 3.811 15 O -0.315 6.315 16 C 0.066 3.934 17 C 0.024 3.976 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.232 4.232 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.401 0.599 31 H 0.412 0.588 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.412 0.588 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.262 0.738 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.704 -30.348 -0.008 36.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.399 5.399 3 C 0.391 3.609 4 O -0.397 6.397 5 N -0.356 5.356 6 C 0.298 3.702 7 O -0.324 6.324 8 C -0.013 4.013 9 N -0.376 5.376 10 C 0.145 3.855 11 C -0.269 4.269 12 C -0.055 4.055 13 C -0.282 4.282 14 C 0.141 3.859 15 O -0.227 6.227 16 C -0.008 4.008 17 C -0.013 4.013 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.255 4.255 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.234 0.766 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.814 -28.461 -0.007 35.260 hybrid contribution 1.428 -0.697 0.000 1.589 sum -19.385 -29.158 -0.007 35.014 Atomic orbital electron populations 1.21513 0.77253 1.02559 1.02848 1.45033 1.08302 1.06818 1.79735 1.16145 0.81196 0.85033 0.78529 1.91108 1.66836 1.29789 1.51995 1.44035 1.07055 1.11476 1.73065 1.20875 0.90440 0.83064 0.75783 1.90867 1.69533 1.30354 1.41693 1.20965 0.88627 0.87514 1.04244 1.44204 1.04133 1.05563 1.83695 1.17251 0.82566 0.92802 0.92851 1.20357 0.92937 0.96972 1.16641 1.20608 0.94558 0.95866 0.94511 1.21182 0.99973 0.92735 1.14261 1.18817 0.92247 0.84454 0.90399 1.86161 1.27527 1.22498 1.86564 1.23326 0.75311 1.02386 0.99760 1.19138 0.96629 0.86677 0.98888 1.21017 0.90841 0.92469 1.52031 0.92287 1.24993 0.98365 0.95898 0.94958 1.69993 1.34702 0.98212 1.49838 0.86434 0.85018 0.78269 0.77684 1.19632 1.20874 1.20869 1.19682 0.93575 0.95138 1.17126 0.91915 0.90085 0.91905 0.76575 0.75259 0.88546 0.88540 0.75015 0.86674 0.86228 0.85465 0.93051 0.93047 0.95397 0.95391 0.92791 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 10.70 59.85 0.64 0.99 16 2 N -0.74 -2.80 5.72 -72.08 -0.41 -3.21 16 3 C 0.69 5.74 8.50 -86.92 -0.74 5.00 16 4 O -0.53 -7.55 14.74 -18.48 -0.27 -7.82 16 5 N -0.69 -3.58 5.24 -15.78 -0.08 -3.67 16 6 C 0.51 4.42 7.84 -10.99 -0.09 4.34 16 7 O -0.46 -6.50 14.07 -18.21 -0.26 -6.76 16 8 C 0.12 0.74 5.39 -5.20 -0.03 0.71 16 9 N -0.74 -7.94 5.70 -59.82 -0.34 -8.28 16 10 C 0.25 3.20 6.65 -83.81 -0.56 2.65 16 11 C -0.25 -2.82 9.31 -39.35 -0.37 -3.18 16 12 C -0.04 -0.46 10.03 -39.63 -0.40 -0.86 16 13 C -0.26 -4.12 9.04 -39.39 -0.36 -4.47 16 14 C 0.19 3.40 6.68 -39.24 -0.26 3.14 16 15 O -0.31 -6.69 10.13 -19.42 -0.20 -6.89 16 16 C 0.07 1.45 4.68 37.16 0.17 1.62 16 17 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 18 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C -0.23 -3.70 9.83 -39.24 -0.39 -4.09 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.40 -0.09 8.84 -40.82 -0.36 -0.45 16 31 H 0.41 -0.04 8.71 -40.82 -0.36 -0.40 16 32 H 0.10 0.40 7.95 -51.93 -0.41 -0.01 16 33 H 0.10 0.40 7.95 -51.92 -0.41 -0.01 16 34 H 0.41 4.93 7.45 -40.82 -0.30 4.63 16 35 H 0.12 0.91 6.73 -52.49 -0.35 0.56 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 38 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 39 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -39.31 370.43 -9.01 -48.32 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.83 Total: -0.49 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.92 Total: -7.17 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.10 Total: -41.18 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.73 Total: -21.47 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.31 -9.01 -48.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055876992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.381 kcal (2) G-P(sol) polarization free energy of solvation -39.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds