Wall clock time and date at job start Tue Mar 31 2020 13:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00487 * 2 1 4 4 O 1.21541 * 119.99860 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00342 * 179.97438 * 3 2 1 6 6 C 1.34775 * 120.00006 * 180.02562 * 5 3 2 7 7 O 1.21237 * 120.00184 * 0.02562 * 6 5 3 8 8 C 1.50698 * 120.00065 * 180.02562 * 6 5 3 9 9 N 1.46498 * 109.47488 * 179.97438 * 8 6 5 10 10 C 1.39664 * 120.00039 * 179.97438 * 9 8 6 11 11 C 1.38973 * 120.04703 * 359.97438 * 10 9 8 12 12 C 1.38116 * 120.03003 * 180.02562 * 11 10 9 13 13 C 1.38216 * 120.13578 * 359.74695 * 12 11 10 14 14 C 1.38779 * 120.08401 * 0.51068 * 13 12 11 15 15 O 1.35897 * 120.00949 * 179.76812 * 14 13 12 16 16 C 1.42898 * 117.00481 * 359.71829 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 C 1.38609 * 119.96517 * 359.48769 * 14 13 12 27 27 H 1.08998 * 109.46815 * 59.99443 * 1 2 3 28 28 H 1.08995 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47051 * 300.00003 * 1 2 3 30 30 H 0.97002 * 119.99960 * 180.02562 * 2 1 3 31 31 H 0.97004 * 119.99530 * 0.02562 * 5 3 2 32 32 H 1.09006 * 109.47342 * 59.99530 * 8 6 5 33 33 H 1.09008 * 109.46640 * 300.00007 * 8 6 5 34 34 H 0.97000 * 119.99514 * 359.97438 * 9 8 6 35 35 H 1.07996 * 119.98339 * 0.02562 * 11 10 9 36 36 H 1.08007 * 119.92769 * 179.97438 * 12 11 10 37 37 H 1.07991 * 119.95689 * 180.26971 * 13 12 11 38 38 H 1.09002 * 109.47259 * 300.00417 * 16 15 14 39 39 H 1.09001 * 109.47074 * 60.00439 * 16 15 14 40 40 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 41 41 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 42 42 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 43 43 H 1.08006 * 120.06150 * 180.23058 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5313 2.2197 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.1606 2.3342 0.0010 7 8 3.5545 3.3842 0.0015 8 6 5.6676 2.3342 0.0010 9 7 6.1561 3.7154 0.0010 10 6 7.5292 3.9705 0.0016 11 6 8.4331 2.9149 0.0027 12 6 9.7909 3.1676 0.0037 13 6 10.2544 4.4697 -0.0015 14 6 9.3565 5.5278 0.0028 15 8 9.8139 6.8074 0.0023 16 6 11.2312 6.9899 0.0036 17 6 11.5529 8.4856 0.0035 18 6 13.0475 8.6781 0.0042 19 1 13.7025 7.8193 0.0042 20 6 13.5789 9.9503 0.0037 21 7 12.7812 10.9960 0.0032 22 14 15.4316 10.1889 0.0053 23 1 16.1012 8.8634 0.0063 24 1 15.8343 10.9454 -1.2074 25 1 15.8320 10.9472 1.2175 26 6 7.9929 5.2786 0.0016 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 3.9717 0.3269 0.0005 32 1 6.0310 1.8207 -0.8892 33 1 6.0309 1.8199 0.8909 34 1 5.5257 4.4527 0.0007 35 1 8.0736 1.8965 0.0027 36 1 10.4919 2.3459 0.0050 37 1 11.3167 4.6639 -0.0051 38 1 11.6563 6.5272 0.8943 39 1 11.6580 6.5261 -0.8857 40 1 11.1277 8.9487 -0.8870 41 1 11.1262 8.9492 0.8929 42 1 13.1551 11.8911 0.0025 43 1 7.2927 6.1009 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055876992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:44 Heat of formation + Delta-G solvation = -102.783599 kcal Electronic energy + Delta-G solvation = -25003.613662 eV Core-core repulsion = 21048.240516 eV Total energy + Delta-G solvation = -3955.373146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32696 -41.00902 -39.87590 -38.80590 -36.02275 -35.89197 -35.51653 -35.34239 -32.56117 -31.48415 -30.17410 -28.63140 -27.38302 -26.76179 -23.85807 -23.74098 -22.78332 -21.79264 -21.60984 -20.21666 -19.45515 -18.68561 -18.06865 -17.46137 -17.37798 -16.89490 -16.79751 -16.58003 -16.51575 -16.10335 -16.06982 -15.73863 -15.30871 -14.74074 -14.72011 -14.35028 -14.31636 -14.16206 -13.99750 -13.86440 -13.16671 -13.09247 -13.03961 -12.66993 -12.50382 -12.46024 -12.23733 -11.95701 -11.66702 -11.52486 -11.37553 -11.35483 -10.98381 -10.90423 -10.62148 -10.22714 -9.20240 -8.39102 -8.25793 -6.39783 0.60054 0.71233 0.86724 1.17952 1.41724 1.43155 1.56789 2.12979 2.17112 2.39572 2.71609 2.90516 2.99282 3.08692 3.55263 4.02665 4.23420 4.27306 4.30634 4.36561 4.37801 4.40476 4.41911 4.52993 4.61625 4.72366 4.76669 4.88183 4.96684 5.01952 5.27588 5.28169 5.34478 5.44090 5.47603 5.55931 5.66054 5.69642 5.77949 6.07715 6.35348 6.47431 6.58375 6.68347 6.75685 7.00521 7.30564 7.30585 8.87734 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.043520 B = 0.001625 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.223700 B =17229.787938 C =17841.960400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.718 5.718 3 C 0.683 3.317 4 O -0.594 6.594 5 N -0.665 5.665 6 C 0.515 3.485 7 O -0.522 6.522 8 C 0.115 3.885 9 N -0.745 5.745 10 C 0.254 3.746 11 C -0.227 4.227 12 C -0.029 4.029 13 C -0.279 4.279 14 C 0.149 3.851 15 O -0.346 6.346 16 C 0.087 3.913 17 C 0.026 3.974 18 C -0.545 4.545 19 H 0.073 0.927 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.979 3.021 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.258 4.258 27 H 0.046 0.954 28 H 0.123 0.877 29 H 0.046 0.954 30 H 0.424 0.576 31 H 0.440 0.560 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.402 0.598 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.061 0.939 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.266 0.734 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.431 -35.593 -0.006 40.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.376 5.376 3 C 0.383 3.617 4 O -0.470 6.470 5 N -0.334 5.334 6 C 0.302 3.698 7 O -0.394 6.394 8 C -0.012 4.012 9 N -0.377 5.377 10 C 0.150 3.850 11 C -0.249 4.249 12 C -0.047 4.047 13 C -0.300 4.300 14 C 0.103 3.897 15 O -0.261 6.261 16 C 0.013 3.987 17 C -0.011 4.011 18 C -0.582 4.582 19 H 0.091 0.909 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.802 3.198 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.281 4.281 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.065 0.935 30 H 0.262 0.738 31 H 0.281 0.719 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.238 0.762 35 H 0.185 0.815 36 H 0.176 0.824 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.075 0.925 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.542 -33.878 -0.005 39.110 hybrid contribution 0.804 0.740 -0.001 1.093 sum -18.737 -33.138 -0.006 38.068 Atomic orbital electron populations 1.21653 0.76887 1.04777 1.01336 1.44903 1.08535 1.06498 1.77629 1.16530 0.81969 0.85177 0.78013 1.91077 1.68332 1.32535 1.55077 1.43698 1.06126 1.12042 1.71534 1.21387 0.91426 0.82821 0.74132 1.90863 1.70853 1.32846 1.44825 1.21374 0.86656 0.85454 1.07707 1.44412 1.03105 1.07481 1.82718 1.17328 0.83878 0.91954 0.91798 1.20883 0.91985 0.98631 1.13437 1.21053 0.95961 0.95223 0.92461 1.21286 0.99373 0.93761 1.15550 1.19150 0.93476 0.83551 0.93533 1.86061 1.26563 1.25400 1.88042 1.22839 0.76515 0.98757 1.00608 1.18990 0.96376 0.89924 0.95822 1.21442 0.91531 0.93295 1.51973 0.90895 1.26081 1.04199 0.95427 0.94123 1.70146 1.37400 0.98901 1.50762 0.85197 0.77934 0.78860 0.77818 1.17879 1.20281 1.20275 1.19782 0.92745 0.96662 1.18930 0.93508 0.85878 0.93499 0.73778 0.71879 0.84688 0.84678 0.76170 0.81527 0.82405 0.85983 0.92080 0.92069 0.98550 0.98541 0.92501 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 10.70 127.77 1.37 1.90 16 2 N -0.72 -3.75 5.72 -500.25 -2.86 -6.61 16 3 C 0.68 10.58 8.50 179.05 1.52 12.10 16 4 O -0.59 -17.71 14.74 18.92 0.28 -17.43 16 5 N -0.67 -5.12 5.24 -440.52 -2.31 -7.42 16 6 C 0.52 7.90 7.84 87.66 0.69 8.59 16 7 O -0.52 -15.22 14.07 19.87 0.28 -14.95 16 8 C 0.11 0.98 5.39 85.63 0.46 1.44 16 9 N -0.74 -14.52 5.70 -343.18 -1.96 -16.48 16 10 C 0.25 6.08 6.65 38.20 0.25 6.33 16 11 C -0.23 -4.08 9.31 22.42 0.21 -3.87 16 12 C -0.03 -0.61 10.03 22.24 0.22 -0.38 16 13 C -0.28 -8.57 9.04 22.39 0.20 -8.37 16 14 C 0.15 5.57 6.68 22.49 0.15 5.72 16 15 O -0.35 -15.78 10.13 -92.39 -0.94 -16.72 16 16 C 0.09 4.00 4.68 71.98 0.34 4.33 16 17 C 0.03 1.48 5.34 29.85 0.16 1.64 16 18 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 19 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 0.00 5.46 84.65 0.46 0.46 16 21 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 22 Si 0.98 44.15 29.54 68.60 2.03 46.17 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 C -0.26 -8.52 9.83 22.49 0.22 -8.29 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.42 -1.84 8.84 -92.71 -0.82 -2.66 16 31 H 0.44 -2.14 8.71 -92.71 -0.81 -2.94 16 32 H 0.14 0.25 7.95 -2.38 -0.02 0.23 16 33 H 0.14 0.24 7.95 -2.38 -0.02 0.23 16 34 H 0.40 9.76 7.45 -92.71 -0.69 9.07 16 35 H 0.17 1.28 6.73 -2.91 -0.02 1.26 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.12 3.77 6.29 -2.91 -0.02 3.75 16 38 H 0.06 2.62 7.67 -2.39 -0.02 2.61 16 39 H 0.06 2.63 7.65 -2.39 -0.02 2.61 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.11 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -95.34 370.43 0.05 -95.29 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -1.25 Total: 5.55 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 6.49 Total: -9.62 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -6.84 Total: -88.31 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.38 Total: -49.09 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -95.34 0.05 -95.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055876992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.492 kcal (2) G-P(sol) polarization free energy of solvation -95.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds