Wall clock time and date at job start Tue Mar 31 2020 13:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00078 * 2 1 4 4 O 1.21280 * 120.00055 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00386 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47676 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47336 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99688 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00226 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49455 * 11 9 8 13 13 C 1.38908 * 120.00352 * 215.12379 * 12 11 9 14 14 C 1.38003 * 120.00179 * 180.02562 * 13 12 11 15 15 C 1.38899 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99801 * 179.97438 * 15 14 13 17 17 C 1.34820 * 117.00252 * 5.33726 * 16 15 14 18 18 H 1.08001 * 119.99593 * 354.96888 * 17 16 15 19 19 C 1.38634 * 120.00020 * 174.96470 * 17 16 15 20 20 N 1.31572 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47391 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46866 * 120.00229 * 21 19 17 24 24 H 1.48496 * 109.47183 * 240.00333 * 21 19 17 25 25 C 1.38902 * 120.00661 * 0.26478 * 15 14 13 26 26 C 1.38008 * 119.99473 * 359.45951 * 25 15 14 27 27 H 1.08996 * 109.47050 * 300.00110 * 1 2 3 28 28 H 1.09004 * 109.46906 * 60.00130 * 1 2 3 29 29 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00317 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46986 * 59.99718 * 5 3 2 32 32 H 1.09009 * 109.46922 * 300.00281 * 5 3 2 33 33 H 1.09002 * 109.46622 * 59.99701 * 6 5 3 34 34 H 1.09000 * 109.47086 * 300.00310 * 6 5 3 35 35 H 1.09002 * 109.47238 * 60.00410 * 7 6 5 36 36 H 1.09000 * 109.47557 * 300.00353 * 7 6 5 37 37 H 0.96993 * 120.00341 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99675 * 355.48546 * 11 9 8 39 39 H 1.07998 * 119.99489 * 359.97438 * 13 12 11 40 40 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 41 41 H 0.97004 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.00563 * 179.70790 * 25 15 14 43 43 H 1.08001 * 120.00490 * 180.27632 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6858 2.6097 0.0002 8 7 6.1741 3.9909 0.0004 9 6 7.4993 4.2372 -0.0001 10 8 8.2894 3.3130 -0.0011 11 7 7.9486 5.5079 0.0005 12 6 9.3217 5.7650 0.0953 13 6 9.7736 6.8770 0.7944 14 6 11.1269 7.1307 0.8874 15 6 12.0372 6.2743 0.2814 16 8 13.3688 6.5241 0.3724 17 6 13.7461 7.5545 1.1558 18 1 12.9994 8.1882 1.6111 19 6 15.0924 7.8003 1.3770 20 7 16.0019 7.0284 0.8220 21 14 15.6150 9.2283 2.4618 22 1 14.4097 9.9376 2.9613 23 1 16.3989 8.7140 3.6135 24 1 16.4519 10.1682 1.6737 25 6 11.5853 5.1655 -0.4228 26 6 10.2322 4.9087 -0.5110 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 -0.0004 31 1 4.0089 0.6536 -0.8908 32 1 4.0096 0.6532 0.8892 33 1 3.7929 3.1229 0.8907 34 1 3.7922 3.1242 -0.8893 35 1 6.0492 2.0964 -0.8900 36 1 6.0492 2.0954 0.8899 37 1 5.5439 4.7282 0.0008 38 1 7.3206 6.2443 -0.0648 39 1 9.0657 7.5436 1.2645 40 1 11.4783 7.9955 1.4306 41 1 16.9439 7.2006 0.9764 42 1 12.2929 4.5023 -0.8979 43 1 9.8809 4.0442 -1.0547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056565034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:26 Heat of formation + Delta-G solvation = -68.193775 kcal Electronic energy + Delta-G solvation = -24982.860756 eV Core-core repulsion = 21028.987537 eV Total energy + Delta-G solvation = -3953.873219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34301 -40.07073 -38.73769 -36.82489 -35.68505 -35.04657 -33.94404 -32.84885 -32.09134 -30.14962 -28.78219 -27.56279 -25.90889 -25.18795 -22.52750 -22.12327 -21.54886 -20.90784 -20.38963 -18.44948 -17.85807 -17.73456 -17.22641 -16.56275 -16.41486 -16.32982 -15.57836 -15.11987 -14.72521 -14.52003 -14.50218 -14.15965 -13.86146 -13.60493 -13.49282 -13.35406 -12.89274 -12.77652 -12.63654 -12.47152 -12.39005 -11.85836 -11.78102 -11.51961 -11.49059 -11.29268 -11.01015 -10.68569 -10.42111 -10.37559 -9.90548 -9.66401 -9.59126 -9.19365 -9.14241 -8.65009 -8.14059 -6.85776 -6.40142 -3.98139 2.17249 2.21793 2.29604 2.58572 2.87629 3.14321 3.16497 3.22025 3.37647 4.00517 4.17519 4.25056 4.53507 4.55426 4.63935 4.66869 4.93402 4.97396 5.11233 5.12156 5.14168 5.28340 5.37525 5.39423 5.61094 5.73503 5.78003 5.84669 5.88199 6.19670 6.26245 6.31599 6.39432 6.74447 6.90250 6.92756 6.97777 7.18101 7.28190 7.31856 7.48733 7.72387 7.86307 8.04502 8.09814 8.72067 9.05502 9.76897 10.78093 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.049211 B = 0.001611 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.838116 B =17375.055298 C =17651.005505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.739 5.739 3 C 0.512 3.488 4 O -0.539 6.539 5 C -0.138 4.138 6 C -0.116 4.116 7 C 0.139 3.861 8 N -0.749 5.749 9 C 0.699 3.301 10 O -0.576 6.576 11 N -0.675 5.675 12 C 0.054 3.946 13 C -0.092 4.092 14 C -0.219 4.219 15 C 0.146 3.854 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.178 4.178 26 C -0.067 4.067 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.403 0.597 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.396 0.604 38 H 0.398 0.602 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.269 0.731 42 H 0.120 0.880 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.133 -11.375 -1.525 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.391 5.391 3 C 0.298 3.702 4 O -0.415 6.415 5 C -0.178 4.178 6 C -0.155 4.155 7 C 0.015 3.985 8 N -0.406 5.406 9 C 0.400 3.600 10 O -0.453 6.453 11 N -0.323 5.323 12 C -0.039 4.039 13 C -0.113 4.113 14 C -0.239 4.239 15 C 0.092 3.908 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.198 4.198 26 C -0.088 4.088 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.237 0.763 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.232 0.768 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.427 -11.617 -1.619 29.830 hybrid contribution -0.285 0.977 0.617 1.191 sum -27.713 -10.640 -1.002 29.702 Atomic orbital electron populations 1.21543 0.79616 1.02267 1.02397 1.45851 1.07903 1.08913 1.76466 1.20782 0.90441 0.83532 0.75421 1.90726 1.70624 1.31288 1.48857 1.21556 0.91487 0.99572 1.05195 1.21520 0.93961 0.95607 1.04392 1.21145 0.92542 0.82299 1.02562 1.45055 1.05413 1.08831 1.81289 1.15952 0.82321 0.83599 0.78163 1.90925 1.54299 1.43233 1.56862 1.42300 1.06840 1.06033 1.77083 1.17051 0.80923 0.99970 1.05967 1.20456 0.95325 0.97227 0.98287 1.20952 0.92101 1.03148 1.07726 1.19415 0.85159 0.92740 0.93509 1.83993 1.16656 1.47866 1.59728 1.21358 0.92332 1.06079 1.26919 0.89062 1.25276 0.94628 0.98853 0.97820 1.70061 1.01113 1.37160 1.41482 0.85655 0.79039 0.79660 0.79100 1.19143 1.20203 1.20208 1.20153 0.94901 0.98518 1.06241 1.20777 0.91480 0.98703 0.97796 0.92200 0.92212 0.90627 0.76308 0.88249 0.88243 0.90422 0.90424 0.91492 0.91467 0.77082 0.76833 0.87245 0.85145 0.92140 0.86173 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.70 59.85 0.64 0.99 16 2 N -0.74 -3.25 5.71 -67.08 -0.38 -3.63 16 3 C 0.51 3.65 7.83 -10.99 -0.09 3.56 16 4 O -0.54 -6.16 15.98 5.56 0.09 -6.07 16 5 C -0.14 -0.65 5.70 -27.89 -0.16 -0.80 16 6 C -0.12 -0.76 4.62 -26.74 -0.12 -0.88 16 7 C 0.14 1.18 5.67 -4.05 -0.02 1.16 16 8 N -0.75 -7.53 5.56 -65.23 -0.36 -7.90 16 9 C 0.70 10.31 8.41 -86.91 -0.73 9.58 16 10 O -0.58 -10.93 13.78 5.29 0.07 -10.86 16 11 N -0.68 -9.56 5.34 -14.18 -0.08 -9.64 16 12 C 0.05 0.99 6.30 -83.62 -0.53 0.46 16 13 C -0.09 -1.70 9.96 -39.42 -0.39 -2.09 16 14 C -0.22 -4.80 9.16 -39.42 -0.36 -5.16 16 15 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 16 O -0.18 -5.20 9.76 -0.03 0.00 -5.20 16 17 C -0.39 -11.01 9.48 30.88 0.29 -10.72 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 21 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 C -0.18 -4.02 9.99 -39.42 -0.39 -4.41 16 26 C -0.07 -1.37 8.69 -39.41 -0.34 -1.72 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.40 0.54 8.83 -40.82 -0.36 0.18 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.87 8.49 -40.82 -0.35 2.52 16 38 H 0.40 4.09 8.84 -40.82 -0.36 3.73 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 43 H 0.13 2.62 6.23 -52.49 -0.33 2.29 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -37.72 370.16 -7.65 -45.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.74 Total: 7.25 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.56 Total: -5.72 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.06 Total: -46.01 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.16 Total: -22.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.72 -7.65 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056565034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.826 kcal (2) G-P(sol) polarization free energy of solvation -37.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds